Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS20575 and HER17_RS20580 are separated by 17 nucleotides HER17_RS20580 and HER17_RS20585 are separated by 78 nucleotides HER17_RS20585 and HER17_RS20590 are separated by 3 nucleotides HER17_RS20590 and HER17_RS20595 are separated by 3 nucleotides HER17_RS20595 and HER17_RS20600 are separated by 82 nucleotides
HER17_RS20575: HER17_RS20575 - porphobilinogen synthase, at 4,611,335 to 4,612,357
_RS20575
HER17_RS20580: HER17_RS20580 - 3'-5' ssDNA/RNA exonuclease TatD, at 4,612,375 to 4,613,157
_RS20580
HER17_RS20585: HER17_RS20585 - Sec-independent protein translocase subunit TatC, at 4,613,236 to 4,613,988
_RS20585
HER17_RS20590: HER17_RS20590 - Sec-independent protein translocase protein TatB, at 4,613,992 to 4,614,603
_RS20590
HER17_RS20595: HER17_RS20595 - Sec-independent protein translocase subunit TatA, at 4,614,607 to 4,614,867
_RS20595
HER17_RS20600: HER17_RS20600 - ubiquinone biosynthesis regulatory protein kinase UbiB, at 4,614,950 to 4,616,590
_RS20600
Position (kb) 4613
4614 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4612.470 kb on + strand, within HER17_RS20580 at 4612.471 kb on - strand, within HER17_RS20580 at 4612.471 kb on - strand, within HER17_RS20580 at 4612.471 kb on - strand, within HER17_RS20580 at 4612.471 kb on - strand, within HER17_RS20580 at 4612.471 kb on - strand, within HER17_RS20580 at 4612.471 kb on - strand, within HER17_RS20580 at 4612.471 kb on - strand, within HER17_RS20580 at 4612.512 kb on + strand, within HER17_RS20580 at 4612.538 kb on + strand, within HER17_RS20580 at 4612.538 kb on + strand, within HER17_RS20580 at 4612.538 kb on + strand, within HER17_RS20580 at 4612.538 kb on + strand, within HER17_RS20580 at 4612.538 kb on + strand, within HER17_RS20580 at 4612.538 kb on + strand, within HER17_RS20580 at 4612.539 kb on - strand, within HER17_RS20580 at 4612.579 kb on - strand, within HER17_RS20580 at 4612.589 kb on - strand, within HER17_RS20580 at 4612.717 kb on + strand, within HER17_RS20580 at 4612.718 kb on - strand, within HER17_RS20580 at 4612.749 kb on + strand, within HER17_RS20580 at 4612.749 kb on + strand, within HER17_RS20580 at 4612.750 kb on - strand, within HER17_RS20580 at 4612.890 kb on + strand, within HER17_RS20580 at 4612.890 kb on + strand, within HER17_RS20580 at 4612.994 kb on + strand, within HER17_RS20580 at 4612.995 kb on - strand, within HER17_RS20580 at 4613.004 kb on - strand, within HER17_RS20580 at 4613.176 kb on + strand at 4613.183 kb on + strand at 4613.210 kb on - strand at 4613.299 kb on + strand at 4613.299 kb on + strand at 4613.299 kb on + strand at 4613.321 kb on + strand, within HER17_RS20585 at 4613.321 kb on + strand, within HER17_RS20585 at 4613.321 kb on + strand, within HER17_RS20585 at 4613.321 kb on + strand, within HER17_RS20585 at 4613.321 kb on + strand, within HER17_RS20585 at 4613.322 kb on - strand, within HER17_RS20585 at 4613.322 kb on - strand, within HER17_RS20585 at 4613.403 kb on + strand, within HER17_RS20585 at 4613.403 kb on + strand, within HER17_RS20585 at 4613.403 kb on + strand, within HER17_RS20585 at 4613.404 kb on - strand, within HER17_RS20585 at 4613.405 kb on + strand, within HER17_RS20585 at 4613.406 kb on - strand, within HER17_RS20585 at 4613.406 kb on - strand, within HER17_RS20585 at 4613.528 kb on + strand, within HER17_RS20585 at 4613.528 kb on + strand, within HER17_RS20585 at 4613.529 kb on - strand, within HER17_RS20585 at 4613.532 kb on + strand, within HER17_RS20585 at 4613.532 kb on + strand, within HER17_RS20585 at 4613.532 kb on + strand, within HER17_RS20585 at 4613.533 kb on - strand, within HER17_RS20585 at 4613.533 kb on - strand, within HER17_RS20585 at 4613.612 kb on + strand, within HER17_RS20585 at 4613.612 kb on + strand, within HER17_RS20585 at 4613.612 kb on + strand, within HER17_RS20585 at 4613.612 kb on + strand, within HER17_RS20585 at 4613.613 kb on - strand, within HER17_RS20585 at 4613.688 kb on + strand, within HER17_RS20585 at 4613.688 kb on + strand, within HER17_RS20585 at 4613.689 kb on - strand, within HER17_RS20585 at 4613.689 kb on - strand, within HER17_RS20585 at 4613.690 kb on + strand, within HER17_RS20585 at 4613.690 kb on + strand, within HER17_RS20585 at 4613.691 kb on - strand, within HER17_RS20585 at 4613.691 kb on - strand, within HER17_RS20585 at 4613.691 kb on - strand, within HER17_RS20585 at 4613.691 kb on - strand, within HER17_RS20585 at 4613.723 kb on + strand, within HER17_RS20585 at 4613.724 kb on - strand, within HER17_RS20585 at 4613.781 kb on + strand, within HER17_RS20585 at 4613.864 kb on + strand, within HER17_RS20585 at 4613.864 kb on + strand, within HER17_RS20585 at 4613.864 kb on + strand, within HER17_RS20585 at 4613.865 kb on - strand, within HER17_RS20585 at 4613.899 kb on + strand, within HER17_RS20585 at 4613.900 kb on - strand, within HER17_RS20585 at 4613.942 kb on - strand at 4613.942 kb on - strand at 4613.942 kb on - strand at 4613.959 kb on - strand at 4613.959 kb on - strand at 4613.973 kb on + strand at 4613.988 kb on + strand at 4613.988 kb on + strand at 4613.993 kb on + strand at 4613.994 kb on - strand at 4613.994 kb on - strand at 4614.057 kb on + strand, within HER17_RS20590 at 4614.058 kb on - strand, within HER17_RS20590 at 4614.058 kb on - strand, within HER17_RS20590 at 4614.135 kb on + strand, within HER17_RS20590 at 4614.188 kb on + strand, within HER17_RS20590 at 4614.188 kb on + strand, within HER17_RS20590 at 4614.189 kb on - strand, within HER17_RS20590 at 4614.189 kb on - strand, within HER17_RS20590 at 4614.244 kb on - strand, within HER17_RS20590 at 4614.244 kb on - strand, within HER17_RS20590 at 4614.261 kb on + strand, within HER17_RS20590 at 4614.318 kb on - strand, within HER17_RS20590 at 4614.318 kb on - strand, within HER17_RS20590 at 4614.318 kb on - strand, within HER17_RS20590 at 4614.471 kb on + strand, within HER17_RS20590 at 4614.571 kb on + strand at 4614.571 kb on + strand at 4614.574 kb on + strand at 4614.575 kb on - strand at 4614.575 kb on - strand at 4614.575 kb on - strand at 4614.575 kb on - strand at 4614.608 kb on + strand at 4614.609 kb on - strand at 4614.609 kb on - strand at 4614.609 kb on - strand at 4614.621 kb on + strand at 4614.621 kb on + strand at 4614.622 kb on - strand at 4614.672 kb on + strand, within HER17_RS20595 at 4614.673 kb on - strand, within HER17_RS20595 at 4614.681 kb on + strand, within HER17_RS20595 at 4614.814 kb on + strand, within HER17_RS20595 at 4614.815 kb on - strand, within HER17_RS20595 at 4614.815 kb on - strand, within HER17_RS20595 at 4614.815 kb on - strand, within HER17_RS20595 at 4614.855 kb on + strand at 4614.855 kb on + strand at 4614.858 kb on + strand at 4614.859 kb on - strand at 4614.859 kb on - strand at 4614.859 kb on - strand at 4614.867 kb on + strand at 4614.868 kb on - strand at 4614.874 kb on + strand at 4614.875 kb on - strand at 4614.875 kb on - strand at 4614.914 kb on + strand at 4614.914 kb on + strand at 4614.914 kb on + strand at 4614.914 kb on + strand at 4614.914 kb on + strand at 4614.914 kb on + strand at 4614.915 kb on - strand at 4614.915 kb on - strand at 4614.915 kb on - strand at 4614.923 kb on + strand at 4614.924 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 4,612,470 + HER17_RS20580 0.12 +0.3 4,612,471 - HER17_RS20580 0.12 +0.3 4,612,471 - HER17_RS20580 0.12 -0.7 4,612,471 - HER17_RS20580 0.12 +0.4 4,612,471 - HER17_RS20580 0.12 +0.1 4,612,471 - HER17_RS20580 0.12 -0.6 4,612,471 - HER17_RS20580 0.12 +0.9 4,612,471 - HER17_RS20580 0.12 -0.2 4,612,512 + HER17_RS20580 0.17 -0.1 4,612,538 + HER17_RS20580 0.21 +0.2 4,612,538 + HER17_RS20580 0.21 +0.2 4,612,538 + HER17_RS20580 0.21 +0.3 4,612,538 + HER17_RS20580 0.21 +1.2 4,612,538 + HER17_RS20580 0.21 +0.8 4,612,538 + HER17_RS20580 0.21 -0.2 4,612,539 - HER17_RS20580 0.21 +1.3 4,612,579 - HER17_RS20580 0.26 -0.7 4,612,589 - HER17_RS20580 0.27 +0.3 4,612,717 + HER17_RS20580 0.44 -0.1 4,612,718 - HER17_RS20580 0.44 +1.1 4,612,749 + HER17_RS20580 0.48 -0.1 4,612,749 + HER17_RS20580 0.48 +0.2 4,612,750 - HER17_RS20580 0.48 +0.2 4,612,890 + HER17_RS20580 0.66 -0.2 4,612,890 + HER17_RS20580 0.66 -0.1 4,612,994 + HER17_RS20580 0.79 -1.0 4,612,995 - HER17_RS20580 0.79 +0.0 4,613,004 - HER17_RS20580 0.80 +0.5 4,613,176 + -0.3 4,613,183 + -0.8 4,613,210 - -0.1 4,613,299 + -0.2 4,613,299 + +0.0 4,613,299 + +0.4 4,613,321 + HER17_RS20585 0.11 +0.0 4,613,321 + HER17_RS20585 0.11 +1.2 4,613,321 + HER17_RS20585 0.11 -0.3 4,613,321 + HER17_RS20585 0.11 +0.6 4,613,321 + HER17_RS20585 0.11 -0.0 4,613,322 - HER17_RS20585 0.11 +0.9 4,613,322 - HER17_RS20585 0.11 +0.1 4,613,403 + HER17_RS20585 0.22 -0.2 4,613,403 + HER17_RS20585 0.22 -0.8 4,613,403 + HER17_RS20585 0.22 -0.4 4,613,404 - HER17_RS20585 0.22 -0.4 4,613,405 + HER17_RS20585 0.22 +0.5 4,613,406 - HER17_RS20585 0.23 +1.1 4,613,406 - HER17_RS20585 0.23 -0.6 4,613,528 + HER17_RS20585 0.39 -0.8 4,613,528 + HER17_RS20585 0.39 -0.8 4,613,529 - HER17_RS20585 0.39 -0.6 4,613,532 + HER17_RS20585 0.39 -0.8 4,613,532 + HER17_RS20585 0.39 +0.5 4,613,532 + HER17_RS20585 0.39 +0.1 4,613,533 - HER17_RS20585 0.39 -0.5 4,613,533 - HER17_RS20585 0.39 +0.2 4,613,612 + HER17_RS20585 0.50 -2.0 4,613,612 + HER17_RS20585 0.50 -1.2 4,613,612 + HER17_RS20585 0.50 +0.3 4,613,612 + HER17_RS20585 0.50 -1.2 4,613,613 - HER17_RS20585 0.50 +0.7 4,613,688 + HER17_RS20585 0.60 -0.2 4,613,688 + HER17_RS20585 0.60 +0.1 4,613,689 - HER17_RS20585 0.60 -0.7 4,613,689 - HER17_RS20585 0.60 +0.3 4,613,690 + HER17_RS20585 0.60 -0.3 4,613,690 + HER17_RS20585 0.60 -1.8 4,613,691 - HER17_RS20585 0.60 +0.3 4,613,691 - HER17_RS20585 0.60 -0.2 4,613,691 - HER17_RS20585 0.60 +0.6 4,613,691 - HER17_RS20585 0.60 +0.7 4,613,723 + HER17_RS20585 0.65 +0.4 4,613,724 - HER17_RS20585 0.65 +1.0 4,613,781 + HER17_RS20585 0.72 -0.3 4,613,864 + HER17_RS20585 0.83 -0.3 4,613,864 + HER17_RS20585 0.83 -0.9 4,613,864 + HER17_RS20585 0.83 -0.8 4,613,865 - HER17_RS20585 0.84 -1.5 4,613,899 + HER17_RS20585 0.88 +0.6 4,613,900 - HER17_RS20585 0.88 +0.0 4,613,942 - +0.5 4,613,942 - -0.1 4,613,942 - -0.6 4,613,959 - -0.0 4,613,959 - +0.1 4,613,973 + +0.7 4,613,988 + -0.5 4,613,988 + -0.8 4,613,993 + -0.8 4,613,994 - -0.8 4,613,994 - +0.4 4,614,057 + HER17_RS20590 0.11 -0.2 4,614,058 - HER17_RS20590 0.11 +0.4 4,614,058 - HER17_RS20590 0.11 -0.9 4,614,135 + HER17_RS20590 0.23 +0.9 4,614,188 + HER17_RS20590 0.32 -0.3 4,614,188 + HER17_RS20590 0.32 -0.9 4,614,189 - HER17_RS20590 0.32 +0.7 4,614,189 - HER17_RS20590 0.32 -0.1 4,614,244 - HER17_RS20590 0.41 +0.4 4,614,244 - HER17_RS20590 0.41 +0.8 4,614,261 + HER17_RS20590 0.44 +1.0 4,614,318 - HER17_RS20590 0.53 +0.7 4,614,318 - HER17_RS20590 0.53 +1.7 4,614,318 - HER17_RS20590 0.53 +0.2 4,614,471 + HER17_RS20590 0.78 +1.9 4,614,571 + -0.3 4,614,571 + +0.6 4,614,574 + +0.5 4,614,575 - +0.0 4,614,575 - -0.5 4,614,575 - -0.2 4,614,575 - +1.0 4,614,608 + +0.5 4,614,609 - -0.7 4,614,609 - -0.0 4,614,609 - -0.7 4,614,621 + +0.2 4,614,621 + +1.2 4,614,622 - -0.2 4,614,672 + HER17_RS20595 0.25 +0.5 4,614,673 - HER17_RS20595 0.25 +0.1 4,614,681 + HER17_RS20595 0.28 +1.3 4,614,814 + HER17_RS20595 0.79 +0.0 4,614,815 - HER17_RS20595 0.80 +0.1 4,614,815 - HER17_RS20595 0.80 +1.4 4,614,815 - HER17_RS20595 0.80 -0.7 4,614,855 + +0.6 4,614,855 + +0.5 4,614,858 + +0.3 4,614,859 - +0.6 4,614,859 - +0.1 4,614,859 - +0.8 4,614,867 + +0.1 4,614,868 - +0.2 4,614,874 + +0.4 4,614,875 - -0.0 4,614,875 - +0.2 4,614,914 + +0.2 4,614,914 + +0.3 4,614,914 + -0.5 4,614,914 + -0.1 4,614,914 + +1.1 4,614,914 + +0.5 4,614,915 - -0.8 4,614,915 - +0.5 4,614,915 - +0.7 4,614,923 + -0.1 4,614,924 - +0.3
Or see this region's nucleotide sequence