Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS18215

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS18210 and HER17_RS18215 are separated by 25 nucleotidesHER17_RS18215 and HER17_RS18220 are separated by 21 nucleotidesHER17_RS18220 and HER17_RS18225 are separated by 218 nucleotides HER17_RS18210: HER17_RS18210 - translation initiation factor IF-2, at 4,100,333 to 4,103,032 _RS18210 HER17_RS18215: HER17_RS18215 - transcription termination factor NusA, at 4,103,058 to 4,104,587 _RS18215 HER17_RS18220: HER17_RS18220 - ribosome maturation factor RimP, at 4,104,609 to 4,105,061 _RS18220 HER17_RS18225: HER17_RS18225 - tRNA-Met, at 4,105,280 to 4,105,356 _RS18225 Position (kb) 4103 4104 4105Strain fitness (log2 ratio) -1 0 1at 4103.050 kb on - strandat 4103.088 kb on - strandat 4103.088 kb on - strandat 4103.091 kb on - strandat 4103.091 kb on - strandat 4103.142 kb on - strandat 4105.410 kb on + strandat 4105.435 kb on - strandat 4105.435 kb on - strandat 4105.442 kb on + strandat 4105.478 kb on - strandat 4105.501 kb on + strandat 4105.501 kb on + strandat 4105.501 kb on + strandat 4105.511 kb on + strandat 4105.511 kb on + strandat 4105.542 kb on + strandat 4105.543 kb on - strandat 4105.587 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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4,103,050 - -0.5
4,103,088 - -0.8
4,103,088 - +0.4
4,103,091 - +0.7
4,103,091 - +0.3
4,103,142 - -1.2
4,105,410 + -0.7
4,105,435 - +0.0
4,105,435 - +0.9
4,105,442 + -0.7
4,105,478 - +1.1
4,105,501 + -1.3
4,105,501 + -0.1
4,105,501 + +0.4
4,105,511 + +0.2
4,105,511 + +1.5
4,105,542 + -0.7
4,105,543 - -0.1
4,105,587 - +0.5

Or see this region's nucleotide sequence