Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS17115

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,851,236	+		HER17_RS17105	0.77	+0.8
3,851,237	-		HER17_RS17105	0.78	+0.1
3,851,326	+				-0.2
3,851,330	+				-0.2
3,851,367	+				+0.5
3,851,368	-				-0.6
3,851,396	+				+0.3
3,851,415	+				+0.7
3,851,416	-				+0.4
3,851,492	-		HER17_RS17110	0.15	-0.2
3,851,496	+		HER17_RS17110	0.16	+0.3
3,851,497	-		HER17_RS17110	0.16	-0.5
3,851,506	+		HER17_RS17110	0.18	-0.1
3,851,506	+		HER17_RS17110	0.18	-0.7
3,851,506	+		HER17_RS17110	0.18	+0.0
3,851,506	+		HER17_RS17110	0.18	+0.6
3,851,507	-		HER17_RS17110	0.18	-2.1
3,851,508	+		HER17_RS17110	0.18	+0.2
3,851,508	+		HER17_RS17110	0.18	-1.5
3,851,508	+		HER17_RS17110	0.18	-0.5
3,851,508	+		HER17_RS17110	0.18	-0.5
3,851,508	+		HER17_RS17110	0.18	-0.2
3,851,508	+		HER17_RS17110	0.18	+0.2
3,851,508	+		HER17_RS17110	0.18	-0.1
3,851,509	-		HER17_RS17110	0.18	+0.7
3,851,509	-		HER17_RS17110	0.18	-0.5
3,851,509	-		HER17_RS17110	0.18	-0.4
3,851,509	-		HER17_RS17110	0.18	-0.8
3,851,509	-		HER17_RS17110	0.18	+1.1
3,851,509	-		HER17_RS17110	0.18	-0.3
3,851,509	-		HER17_RS17110	0.18	+0.5
3,851,509	-		HER17_RS17110	0.18	-0.5
3,851,509	-		HER17_RS17110	0.18	-0.2
3,851,513	+		HER17_RS17110	0.19	-0.1
3,851,521	-		HER17_RS17110	0.21	-0.3
3,851,617	+		HER17_RS17110	0.41	+0.4
3,851,650	+		HER17_RS17110	0.49	+0.1
3,851,651	-		HER17_RS17110	0.49	+0.3
3,851,712	+		HER17_RS17110	0.62	-0.6
3,851,713	-		HER17_RS17110	0.62	-0.6
3,851,719	+		HER17_RS17110	0.63	-0.1
3,851,719	+		HER17_RS17110	0.63	-0.2
3,851,720	-		HER17_RS17110	0.63	-1.3
3,851,749	+		HER17_RS17110	0.70	-1.5
3,851,749	+		HER17_RS17110	0.70	-0.4
3,851,749	+		HER17_RS17110	0.70	+0.1
3,851,749	+		HER17_RS17110	0.70	+0.3
3,851,750	-		HER17_RS17110	0.70	+1.0
3,851,750	-		HER17_RS17110	0.70	-0.4
3,851,750	-		HER17_RS17110	0.70	-0.8
3,851,750	-		HER17_RS17110	0.70	+0.6
3,851,750	-		HER17_RS17110	0.70	-0.4
3,851,750	-		HER17_RS17110	0.70	+0.7
3,851,782	+		HER17_RS17110	0.77	-1.6
3,851,829	-		HER17_RS17110	0.87	+1.1
3,851,851	-				+0.8
3,851,851	-				+0.2
3,851,865	-				-0.2
3,851,865	-				+0.5
3,851,890	+				-1.9
3,851,890	+				-0.4
3,851,890	+				-0.1
3,851,891	-				-1.1
3,851,904	+				+0.1
3,851,905	-				+0.4
3,851,958	+				+0.3
3,851,958	+				-0.1
3,851,993	-				-0.8
3,852,031	+				-0.1
3,852,031	+				+0.4
3,852,054	+				+0.3
3,852,054	+				-0.5
3,852,055	-				+0.7
3,852,055	-				-0.1
3,852,055	-				+0.1
3,852,061	+				-0.2
3,852,061	+				+0.9
3,852,062	-				+0.3
3,852,062	-				+0.5
3,852,062	-				-1.0
3,852,065	+				-0.3
3,852,065	+				+1.5
3,852,065	+				-0.5
3,852,065	+				+1.3
3,852,065	+				+0.2
3,852,065	+				+0.8
3,852,066	-				-0.4
3,852,077	-				+0.5
3,852,077	-				-1.5
3,852,153	+				+0.5
3,852,154	-				-0.5
3,852,154	-				-0.5
3,852,154	-				+1.4
3,852,278	+		HER17_RS17115	0.24	+1.3
3,852,279	-		HER17_RS17115	0.24	-0.8
3,852,391	+		HER17_RS17115	0.37	-0.1
3,852,659	-		HER17_RS17115	0.67	-0.8
3,852,659	-		HER17_RS17115	0.67	-0.2
3,852,666	+		HER17_RS17115	0.68	-1.0
3,852,666	+		HER17_RS17115	0.68	+0.5
3,852,667	-		HER17_RS17115	0.68	-2.3
3,852,670	+		HER17_RS17115	0.68	+0.8
3,852,670	+		HER17_RS17115	0.68	-0.6
3,852,670	+		HER17_RS17115	0.68	-0.4
3,852,671	-		HER17_RS17115	0.68	+0.7
3,852,671	-		HER17_RS17115	0.68	+0.4
3,852,671	-		HER17_RS17115	0.68	+2.0
3,852,671	-		HER17_RS17115	0.68	+0.6
3,852,673	-		HER17_RS17115	0.69	-0.1
3,852,724	+		HER17_RS17115	0.74	+1.0
3,852,725	-		HER17_RS17115	0.75	-0.0
3,852,725	-		HER17_RS17115	0.75	-1.0
3,852,729	+		HER17_RS17115	0.75	-0.6
3,852,729	+		HER17_RS17115	0.75	-0.3
3,852,729	+		HER17_RS17115	0.75	+1.2
3,852,729	+		HER17_RS17115	0.75	-0.2
3,852,729	+		HER17_RS17115	0.75	-1.2
3,852,729	+		HER17_RS17115	0.75	+0.0
3,852,729	+		HER17_RS17115	0.75	-1.1
3,852,729	+		HER17_RS17115	0.75	+0.3
3,852,729	+		HER17_RS17115	0.75	+0.3
3,852,729	+		HER17_RS17115	0.75	-1.1
3,852,729	+		HER17_RS17115	0.75	-0.6
3,852,729	+		HER17_RS17115	0.75	-1.9
3,852,729	+		HER17_RS17115	0.75	+0.1
3,852,730	-		HER17_RS17115	0.75	+0.5
3,852,730	-		HER17_RS17115	0.75	-0.1
3,852,730	-		HER17_RS17115	0.75	-0.3
3,852,730	-		HER17_RS17115	0.75	+0.7
3,852,730	-		HER17_RS17115	0.75	-0.7
3,852,730	-		HER17_RS17115	0.75	+0.1
3,852,768	+		HER17_RS17115	0.79	+2.1
3,852,796	+		HER17_RS17115	0.83	+0.4
3,852,906	-				-0.2
3,852,906	-				-0.1
3,852,937	-				+0.0
3,853,064	-				-0.4
3,853,084	+				-1.3
3,853,109	-				-0.0
3,853,130	+				+0.0
3,853,143	+				-0.2
3,853,144	-				+0.3
3,853,263	+				-0.5
3,853,264	-				-2.1
3,853,267	-				-0.9
3,853,267	-				-1.9
3,853,276	+				-0.5
3,853,287	+				+0.4
3,853,310	+				-1.0
3,853,310	+				+0.0
3,853,310	+				+0.2
3,853,310	+				+1.1
3,853,310	+				+0.4
3,853,310	+				-0.5
3,853,310	+				-0.1
3,853,311	-				+0.3
3,853,311	-				+0.4
3,853,313	+				-0.4
3,853,322	+				-0.4
3,853,322	+				+0.4
3,853,322	+				+0.5
3,853,322	+				+0.2
3,853,323	-				+0.2
3,853,323	-				+0.2
3,853,326	-				-1.6
3,853,326	-				+2.0
3,853,351	-				+0.9
3,853,364	+				-0.1
3,853,364	+				+0.4
3,853,365	-				+1.1
3,853,375	-				+0.1
3,853,394	+				-0.1
3,853,410	+				-0.6
3,853,411	-				-0.6
3,853,448	-				-0.6
3,853,457	+				-0.4
3,853,457	+				-0.6
3,853,457	+				+1.0
3,853,457	+				+1.1
3,853,458	-				+0.6
3,853,458	-				-1.3
3,853,458	-				-2.2
3,853,458	-				-1.4
3,853,458	-				+0.1
3,853,460	+				+0.8
3,853,461	-				+0.6
3,853,499	+				+2.0
3,853,691	+		HER17_RS17120	0.15	+0.9
3,853,691	+		HER17_RS17120	0.15	+0.1
3,853,691	+		HER17_RS17120	0.15	-0.0
3,853,691	+		HER17_RS17120	0.15	-0.6
3,853,692	-		HER17_RS17120	0.15	+0.8
3,853,692	-		HER17_RS17120	0.15	-0.3
3,853,692	-		HER17_RS17120	0.15	-1.2
3,853,765	+		HER17_RS17120	0.20	-0.2
3,853,845	-		HER17_RS17120	0.25	-1.1
3,853,845	-		HER17_RS17120	0.25	+0.3
3,853,850	-		HER17_RS17120	0.25	-0.7
3,853,850	-		HER17_RS17120	0.25	+1.2
3,853,897	+		HER17_RS17120	0.28	-0.3
3,853,898	-		HER17_RS17120	0.28	+1.1
3,853,901	+		HER17_RS17120	0.28	-0.3
3,853,901	+		HER17_RS17120	0.28	+0.1
3,853,901	+		HER17_RS17120	0.28	+0.7
3,853,901	+		HER17_RS17120	0.28	-0.3
3,853,901	+		HER17_RS17120	0.28	-0.3
3,853,902	-		HER17_RS17120	0.28	-0.7
3,853,902	-		HER17_RS17120	0.28	+0.1
3,853,902	-		HER17_RS17120	0.28	+0.1
3,853,902	-		HER17_RS17120	0.28	+1.1