Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS14550

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS14545 and HER17_RS14550 overlap by 1 nucleotidesHER17_RS14550 and HER17_RS14555 are separated by 22 nucleotides HER17_RS14545: HER17_RS14545 - glycosyltransferase, at 3,271,915 to 3,273,195 _RS14545 HER17_RS14550: HER17_RS14550 - glycosyltransferase, at 3,273,195 to 3,274,223 _RS14550 HER17_RS14555: HER17_RS14555 - glycosyltransferase, at 3,274,246 to 3,275,433 _RS14555 Position (kb) 3273 3274 3275Strain fitness (log2 ratio) -1 0 1at 3272.261 kb on + strand, within HER17_RS14545at 3272.289 kb on + strand, within HER17_RS14545at 3272.533 kb on + strand, within HER17_RS14545at 3273.344 kb on + strand, within HER17_RS14550at 3273.408 kb on + strand, within HER17_RS14550at 3273.680 kb on - strand, within HER17_RS14550at 3273.689 kb on + strand, within HER17_RS14550at 3273.708 kb on - strand, within HER17_RS14550at 3273.708 kb on - strand, within HER17_RS14550at 3273.749 kb on + strand, within HER17_RS14550at 3274.176 kb on + strandat 3274.648 kb on + strand, within HER17_RS14555at 3274.704 kb on + strand, within HER17_RS14555at 3274.704 kb on + strand, within HER17_RS14555at 3274.801 kb on + strand, within HER17_RS14555at 3274.859 kb on + strand, within HER17_RS14555at 3274.940 kb on + strand, within HER17_RS14555at 3274.940 kb on + strand, within HER17_RS14555at 3275.020 kb on + strand, within HER17_RS14555at 3275.127 kb on + strand, within HER17_RS14555

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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3,272,261 + HER17_RS14545 0.27 +0.5
3,272,289 + HER17_RS14545 0.29 -0.5
3,272,533 + HER17_RS14545 0.48 +0.3
3,273,344 + HER17_RS14550 0.14 -0.6
3,273,408 + HER17_RS14550 0.21 +0.6
3,273,680 - HER17_RS14550 0.47 -0.7
3,273,689 + HER17_RS14550 0.48 +0.9
3,273,708 - HER17_RS14550 0.50 +0.1
3,273,708 - HER17_RS14550 0.50 +0.1
3,273,749 + HER17_RS14550 0.54 -0.7
3,274,176 + -0.0
3,274,648 + HER17_RS14555 0.34 +0.1
3,274,704 + HER17_RS14555 0.39 -0.2
3,274,704 + HER17_RS14555 0.39 +0.1
3,274,801 + HER17_RS14555 0.47 +0.7
3,274,859 + HER17_RS14555 0.52 +0.6
3,274,940 + HER17_RS14555 0.58 -0.9
3,274,940 + HER17_RS14555 0.58 -0.2
3,275,020 + HER17_RS14555 0.65 -1.4
3,275,127 + HER17_RS14555 0.74 -0.3

Or see this region's nucleotide sequence