Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS14280

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,209,477	+		HER17_RS14275	0.43	-0.6
3,209,485	+		HER17_RS14275	0.44	+0.2
3,209,486	-		HER17_RS14275	0.44	-0.3
3,209,525	-		HER17_RS14275	0.48	-1.1
3,209,862	+		HER17_RS14275	0.79	+1.3
3,209,862	+		HER17_RS14275	0.79	+0.3
3,209,862	+		HER17_RS14275	0.79	-0.8
3,209,862	+		HER17_RS14275	0.79	-0.1
3,209,863	-		HER17_RS14275	0.79	-0.4
3,209,863	-		HER17_RS14275	0.79	+0.4
3,209,863	-		HER17_RS14275	0.79	-0.5
3,209,863	-		HER17_RS14275	0.79	-0.1
3,209,905	+		HER17_RS14275	0.83	+0.0
3,209,906	-		HER17_RS14275	0.83	+0.6
3,209,975	-		HER17_RS14275	0.89	-0.8
3,209,975	-		HER17_RS14275	0.89	+0.5
3,209,993	-				+0.4
3,210,011	-				-0.1
3,210,065	+				-0.3
3,210,066	-				+0.8
3,210,077	-				+0.4
3,210,310	+				-0.8
3,210,312	+				+0.3
3,210,312	+				-0.1
3,210,371	+				+0.2
3,210,493	-				-0.4
3,210,540	+				-1.9
3,210,609	+				+0.9
3,210,610	-				+0.5
3,210,613	+				+0.1
3,210,705	-				-1.4
3,210,705	-				+0.2
3,210,728	-		HER17_RS14280	0.10	+0.5
3,210,737	+		HER17_RS14280	0.11	-1.5
3,210,737	+		HER17_RS14280	0.11	+0.8
3,210,738	-		HER17_RS14280	0.11	+0.3
3,210,766	+		HER17_RS14280	0.12	+0.0
3,210,770	+		HER17_RS14280	0.12	-0.0
3,210,771	-		HER17_RS14280	0.12	-0.2
3,210,811	-		HER17_RS14280	0.13	-0.3
3,210,881	-		HER17_RS14280	0.15	+1.6
3,210,955	+		HER17_RS14280	0.18	+0.1
3,210,995	+		HER17_RS14280	0.19	+0.6
3,210,996	-		HER17_RS14280	0.19	-0.1
3,211,016	-		HER17_RS14280	0.20	+0.7
3,211,016	-		HER17_RS14280	0.20	+0.6
3,211,016	-		HER17_RS14280	0.20	+0.1
3,211,113	+		HER17_RS14280	0.23	-0.2
3,211,113	+		HER17_RS14280	0.23	-0.0
3,211,224	+		HER17_RS14280	0.26	-1.3
3,211,225	-		HER17_RS14280	0.26	-0.9
3,211,227	+		HER17_RS14280	0.26	-0.6
3,211,227	+		HER17_RS14280	0.26	-0.1
3,211,228	-		HER17_RS14280	0.26	-1.1
3,211,288	+		HER17_RS14280	0.28	+1.6
3,211,289	-		HER17_RS14280	0.28	+0.6
3,211,361	-		HER17_RS14280	0.31	-1.5
3,211,361	-		HER17_RS14280	0.31	+0.0
3,211,361	-		HER17_RS14280	0.31	-1.2
3,211,396	-		HER17_RS14280	0.32	-0.4
3,211,401	-		HER17_RS14280	0.32	-0.5
3,211,401	-		HER17_RS14280	0.32	-0.9
3,211,417	+		HER17_RS14280	0.32	-0.3
3,211,418	-		HER17_RS14280	0.32	+0.3
3,211,563	+		HER17_RS14280	0.37	+0.0
3,211,564	-		HER17_RS14280	0.37	+0.1
3,211,564	-		HER17_RS14280	0.37	-0.8
3,211,610	-		HER17_RS14280	0.39	+0.1
3,211,614	+		HER17_RS14280	0.39	-0.5
3,211,615	-		HER17_RS14280	0.39	-0.3
3,211,648	+		HER17_RS14280	0.40	-2.2
3,211,649	-		HER17_RS14280	0.40	+1.4
3,211,657	+		HER17_RS14280	0.40	+0.2
3,211,657	+		HER17_RS14280	0.40	+0.0
3,211,657	+		HER17_RS14280	0.40	-0.5
3,211,658	-		HER17_RS14280	0.40	-0.5
3,211,658	-		HER17_RS14280	0.40	-0.6
3,211,665	-		HER17_RS14280	0.40	+1.0
3,211,665	-		HER17_RS14280	0.40	+0.7
3,211,741	+		HER17_RS14280	0.43	-0.6
3,211,765	+		HER17_RS14280	0.43	+0.4
3,211,766	+		HER17_RS14280	0.44	+0.1
3,211,767	-		HER17_RS14280	0.44	-0.9
3,211,767	-		HER17_RS14280	0.44	+1.2
3,211,797	+		HER17_RS14280	0.45	-0.2
3,211,798	-		HER17_RS14280	0.45	+1.3
3,211,798	-		HER17_RS14280	0.45	-1.8
3,211,798	-		HER17_RS14280	0.45	+0.5
3,211,850	-		HER17_RS14280	0.46	+0.7
3,211,850	-		HER17_RS14280	0.46	+0.5
3,211,942	+		HER17_RS14280	0.49	+0.2
3,211,942	+		HER17_RS14280	0.49	-0.4
3,211,942	+		HER17_RS14280	0.49	-0.5
3,211,943	-		HER17_RS14280	0.49	+1.2
3,211,943	-		HER17_RS14280	0.49	+0.5
3,211,979	+		HER17_RS14280	0.50	-0.4
3,212,111	-		HER17_RS14280	0.55	-1.1
3,212,120	+		HER17_RS14280	0.55	-0.0
3,212,197	+		HER17_RS14280	0.57	-0.6
3,212,198	-		HER17_RS14280	0.57	+0.0
3,212,224	-		HER17_RS14280	0.58	+0.2
3,212,287	+		HER17_RS14280	0.60	+0.2
3,212,369	-		HER17_RS14280	0.63	-0.3
3,212,412	+		HER17_RS14280	0.64	-0.4
3,212,424	+		HER17_RS14280	0.65	+0.9
3,212,425	-		HER17_RS14280	0.65	-0.6
3,212,689	+		HER17_RS14280	0.73	+1.5
3,212,689	+		HER17_RS14280	0.73	-0.1
3,212,690	-		HER17_RS14280	0.73	-1.1
3,212,700	+		HER17_RS14280	0.73	+0.3
3,212,700	+		HER17_RS14280	0.73	+0.6
3,212,770	-		HER17_RS14280	0.76	-0.4
3,212,975	+		HER17_RS14280	0.82	+0.3
3,212,976	-		HER17_RS14280	0.82	-0.2
3,212,983	+		HER17_RS14280	0.82	-1.0
3,213,238	+				-0.4
3,213,238	+				-1.3
3,213,239	-				+0.6
3,213,239	-				-0.1
3,213,240	+				+0.3
3,213,241	-				+0.0
3,213,274	-				-0.3
3,213,274	-				+0.9
3,213,274	-				-1.3
3,213,344	+				-0.3
3,213,363	+				-0.3
3,213,378	-				-0.5
3,213,477	-				+1.1
3,213,548	+				+0.7
3,213,615	-				+0.2
3,213,619	-				+0.3
3,213,649	+				+1.0
3,213,649	+				-0.1
3,213,674	+				+0.3
3,213,677	+				-0.9
3,213,682	-				+0.1
3,213,746	+				-0.1
3,213,794	-				-0.0
3,213,943	+		HER17_RS14285	0.22	+0.3
3,213,944	-		HER17_RS14285	0.22	-0.5
3,213,948	-		HER17_RS14285	0.22	+1.2
3,213,963	+		HER17_RS14285	0.23	+0.8
3,213,971	+		HER17_RS14285	0.24	-0.2
3,213,985	-		HER17_RS14285	0.25	+0.3
3,213,991	+		HER17_RS14285	0.25	-0.2
3,214,007	+		HER17_RS14285	0.27	-0.8
3,214,007	+		HER17_RS14285	0.27	+0.2
3,214,042	+		HER17_RS14285	0.29	+1.7
3,214,052	+		HER17_RS14285	0.30	+0.3
3,214,053	-		HER17_RS14285	0.30	+0.7
3,214,053	-		HER17_RS14285	0.30	+1.1
3,214,138	+		HER17_RS14285	0.37	+1.1
3,214,139	-		HER17_RS14285	0.37	-0.0
3,214,139	-		HER17_RS14285	0.37	+1.4
3,214,147	+		HER17_RS14285	0.38	-0.7
3,214,150	+		HER17_RS14285	0.38	-1.1
3,214,151	-		HER17_RS14285	0.38	-0.1
3,214,151	-		HER17_RS14285	0.38	-0.5
3,214,185	+		HER17_RS14285	0.41	+0.1
3,214,186	-		HER17_RS14285	0.41	-0.9
3,214,273	-		HER17_RS14285	0.48	+0.9
3,214,352	+		HER17_RS14285	0.54	-0.3
3,214,353	-		HER17_RS14285	0.54	+1.3
3,214,353	-		HER17_RS14285	0.54	+0.6
3,214,376	+		HER17_RS14285	0.56	+0.0
3,214,376	+		HER17_RS14285	0.56	+0.9
3,214,376	+		HER17_RS14285	0.56	+0.4
3,214,376	+		HER17_RS14285	0.56	-1.6
3,214,376	+		HER17_RS14285	0.56	+0.8
3,214,376	+		HER17_RS14285	0.56	-0.1
3,214,376	+		HER17_RS14285	0.56	-0.1
3,214,376	+		HER17_RS14285	0.56	-0.2
3,214,376	+		HER17_RS14285	0.56	+0.1
3,214,377	-		HER17_RS14285	0.56	+1.0
3,214,377	-		HER17_RS14285	0.56	-0.1
3,214,377	-		HER17_RS14285	0.56	+0.6
3,214,377	-		HER17_RS14285	0.56	+0.7
3,214,449	+		HER17_RS14285	0.62	-0.1
3,214,450	-		HER17_RS14285	0.62	+0.3
3,214,484	-		HER17_RS14285	0.64	+0.3