Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS08435

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
1,858,465	+		HER17_RS08425	0.81	-0.1
1,858,466	-		HER17_RS08425	0.81	-1.7
1,858,555	+				+0.7
1,858,561	+				+0.4
1,858,571	+				+0.1
1,858,572	-				-0.4
1,858,672	+				+0.5
1,858,717	-				+0.4
1,858,717	-				+0.4
1,858,768	+				+0.6
1,858,769	-				-0.5
1,858,892	+		HER17_RS08430	0.17	+0.3
1,858,929	+		HER17_RS08430	0.23	-0.5
1,858,944	-		HER17_RS08430	0.26	+1.7
1,858,983	-		HER17_RS08430	0.32	-0.3
1,858,983	-		HER17_RS08430	0.32	-0.6
1,858,993	-		HER17_RS08430	0.33	+0.9
1,858,995	-		HER17_RS08430	0.34	+0.8
1,859,025	+		HER17_RS08430	0.39	-1.1
1,859,025	+		HER17_RS08430	0.39	-0.6
1,859,068	+		HER17_RS08430	0.46	+0.5
1,859,068	+		HER17_RS08430	0.46	+0.2
1,859,069	-		HER17_RS08430	0.46	+0.7
1,859,069	-		HER17_RS08430	0.46	-0.8
1,859,073	+		HER17_RS08430	0.46	+0.7
1,859,073	+		HER17_RS08430	0.46	-1.5
1,859,106	+		HER17_RS08430	0.52	-1.2
1,859,111	+		HER17_RS08430	0.52	-0.3
1,859,111	+		HER17_RS08430	0.52	+0.3
1,859,112	-		HER17_RS08430	0.53	-0.4
1,859,112	-		HER17_RS08430	0.53	-0.9
1,859,126	+		HER17_RS08430	0.55	-0.3
1,859,126	+		HER17_RS08430	0.55	+0.0
1,859,223	+		HER17_RS08430	0.71	+0.3
1,859,223	+		HER17_RS08430	0.71	-0.1
1,859,241	+		HER17_RS08430	0.73	+0.4
1,859,267	+		HER17_RS08430	0.78	+0.1
1,859,369	+				+0.5
1,859,452	-				+0.2
1,859,495	+				-0.7
1,859,499	+				-2.1
1,859,499	+				-0.1
1,859,500	-				+0.7
1,859,602	-				-0.2
1,859,693	+		HER17_RS08435	0.13	+0.8
1,859,695	+		HER17_RS08435	0.13	+0.4
1,859,695	+		HER17_RS08435	0.13	-0.0
1,859,696	-		HER17_RS08435	0.13	-0.1
1,859,700	+		HER17_RS08435	0.13	+0.5
1,859,700	+		HER17_RS08435	0.13	+0.3
1,859,708	+		HER17_RS08435	0.13	-0.2
1,859,708	+		HER17_RS08435	0.13	+0.4
1,859,708	+		HER17_RS08435	0.13	-1.5
1,859,709	-		HER17_RS08435	0.13	-2.5
1,859,777	+		HER17_RS08435	0.17	-0.0
1,859,777	+		HER17_RS08435	0.17	+0.2
1,859,809	+		HER17_RS08435	0.18	-1.3
1,859,809	+		HER17_RS08435	0.18	-1.1
1,859,809	+		HER17_RS08435	0.18	+0.6
1,859,809	+		HER17_RS08435	0.18	-0.1
1,859,810	-		HER17_RS08435	0.18	+1.3
1,859,810	-		HER17_RS08435	0.18	+0.1
1,859,810	-		HER17_RS08435	0.18	+0.9
1,859,810	-		HER17_RS08435	0.18	-0.3
1,859,810	-		HER17_RS08435	0.18	+0.1
1,859,810	-		HER17_RS08435	0.18	-0.6
1,859,810	-		HER17_RS08435	0.18	-1.5
1,859,813	+		HER17_RS08435	0.18	-0.2
1,859,813	+		HER17_RS08435	0.18	+0.4
1,859,813	+		HER17_RS08435	0.18	-0.0
1,859,813	+		HER17_RS08435	0.18	-0.1
1,859,813	+		HER17_RS08435	0.18	-0.2
1,859,814	-		HER17_RS08435	0.18	+0.1
1,859,814	-		HER17_RS08435	0.18	-1.2
1,859,814	-		HER17_RS08435	0.18	-1.2
1,859,814	-		HER17_RS08435	0.18	+1.1
1,859,849	+		HER17_RS08435	0.20	+0.3
1,859,850	-		HER17_RS08435	0.20	-0.4
1,859,850	-		HER17_RS08435	0.20	+1.2
1,859,850	-		HER17_RS08435	0.20	-0.7
1,859,850	-		HER17_RS08435	0.20	+0.8
1,859,852	+		HER17_RS08435	0.20	-0.2
1,859,852	+		HER17_RS08435	0.20	+0.9
1,859,853	-		HER17_RS08435	0.20	-0.0
1,859,869	+		HER17_RS08435	0.21	-0.2
1,859,918	+		HER17_RS08435	0.23	+0.3
1,859,918	+		HER17_RS08435	0.23	-0.2
1,859,918	+		HER17_RS08435	0.23	-1.0
1,859,963	+		HER17_RS08435	0.25	+0.3
1,859,963	+		HER17_RS08435	0.25	-0.2
1,859,964	-		HER17_RS08435	0.25	-2.0
1,860,004	+		HER17_RS08435	0.27	-0.9
1,860,045	+		HER17_RS08435	0.29	-0.3
1,860,046	-		HER17_RS08435	0.29	-0.5
1,860,077	+		HER17_RS08435	0.31	-1.6
1,860,077	+		HER17_RS08435	0.31	+0.2
1,860,077	+		HER17_RS08435	0.31	+0.2
1,860,077	+		HER17_RS08435	0.31	-0.4
1,860,080	+		HER17_RS08435	0.31	-3.1
1,860,080	+		HER17_RS08435	0.31	-0.3
1,860,080	+		HER17_RS08435	0.31	-1.0
1,860,080	+		HER17_RS08435	0.31	-0.6
1,860,080	+		HER17_RS08435	0.31	+0.1
1,860,101	-		HER17_RS08435	0.32	+2.5
1,860,138	-		HER17_RS08435	0.34	-0.3
1,860,181	+		HER17_RS08435	0.36	+0.2
1,860,182	-		HER17_RS08435	0.36	+0.5
1,860,182	-		HER17_RS08435	0.36	-0.4
1,860,206	+		HER17_RS08435	0.37	+0.3
1,860,206	+		HER17_RS08435	0.37	-0.3
1,860,207	-		HER17_RS08435	0.37	-0.8
1,860,257	+		HER17_RS08435	0.39	+0.1
1,860,259	+		HER17_RS08435	0.39	-0.6
1,860,259	+		HER17_RS08435	0.39	+1.0
1,860,259	+		HER17_RS08435	0.39	+0.0
1,860,259	+		HER17_RS08435	0.39	-0.0
1,860,260	-		HER17_RS08435	0.39	-0.2
1,860,260	-		HER17_RS08435	0.39	+0.6
1,860,260	-		HER17_RS08435	0.39	-0.7
1,860,260	-		HER17_RS08435	0.39	-0.3
1,860,260	-		HER17_RS08435	0.39	+0.8
1,860,345	-		HER17_RS08435	0.43	+0.1
1,860,362	+		HER17_RS08435	0.44	+0.2
1,860,362	+		HER17_RS08435	0.44	-0.7
1,860,363	-		HER17_RS08435	0.44	-1.8
1,860,363	-		HER17_RS08435	0.44	-0.2
1,860,363	-		HER17_RS08435	0.44	+0.4
1,860,550	+		HER17_RS08435	0.53	-0.4
1,860,550	+		HER17_RS08435	0.53	-0.4
1,860,551	-		HER17_RS08435	0.53	+0.9
1,860,658	+		HER17_RS08435	0.58	-0.1
1,860,749	+		HER17_RS08435	0.62	+0.1
1,860,749	+		HER17_RS08435	0.62	+0.0
1,860,749	+		HER17_RS08435	0.62	-0.3
1,860,750	-		HER17_RS08435	0.62	+0.3
1,860,752	-		HER17_RS08435	0.62	+0.9
1,860,781	+		HER17_RS08435	0.64	+0.2
1,860,781	+		HER17_RS08435	0.64	-0.3
1,860,782	-		HER17_RS08435	0.64	+0.6
1,860,782	-		HER17_RS08435	0.64	+0.1
1,860,782	-		HER17_RS08435	0.64	-0.4
1,860,829	+		HER17_RS08435	0.66	-1.2
1,860,829	+		HER17_RS08435	0.66	+0.1
1,860,829	+		HER17_RS08435	0.66	-0.6
1,860,830	-		HER17_RS08435	0.66	-2.0
1,860,899	+		HER17_RS08435	0.69	+0.0
1,860,899	+		HER17_RS08435	0.69	-0.6
1,860,899	+		HER17_RS08435	0.69	-0.9
1,860,899	+		HER17_RS08435	0.69	+0.5
1,860,900	-		HER17_RS08435	0.69	+1.0
1,860,900	-		HER17_RS08435	0.69	+0.7
1,860,900	-		HER17_RS08435	0.69	+0.5
1,860,975	+		HER17_RS08435	0.73	+0.7
1,860,975	+		HER17_RS08435	0.73	+0.4
1,860,975	+		HER17_RS08435	0.73	-0.3
1,860,976	-		HER17_RS08435	0.73	-0.4
1,860,976	-		HER17_RS08435	0.73	-1.0
1,860,977	+		HER17_RS08435	0.73	-0.0
1,860,977	+		HER17_RS08435	0.73	-0.1
1,861,178	-		HER17_RS08435	0.82	+0.1
1,861,499	+				+0.5
1,861,502	-				-0.1
1,861,502	-				-1.3
1,861,502	-				+1.0
1,861,519	+				-0.3
1,861,519	+				+0.9
1,861,520	-				-0.3
1,861,520	-				+0.1
1,861,520	-				-1.1
1,861,520	-				-1.2
1,861,520	-				-0.3
1,861,520	-				+0.7
1,861,520	-				-0.0
1,861,525	+				+0.2
1,861,525	+				-1.1
1,861,559	+				+0.5
1,861,559	+				+0.1
1,861,559	+				+0.2
1,861,559	+				-1.0
1,861,559	+				+0.7
1,861,560	-				-0.3
1,861,560	-				+0.5
1,861,562	+				+1.1
1,861,563	-				-0.4
1,861,563	-				+0.5
1,861,568	+				-0.9
1,861,568	+				-0.3
1,861,568	+				-0.6
1,861,568	+				-0.0
1,861,569	-				+0.3
1,861,569	-				+0.5
1,861,569	-				+0.9
1,861,569	-				-0.9
1,861,569	-				+0.2
1,861,678	+		HER17_RS08440	0.23	-1.1
1,861,714	+		HER17_RS08440	0.31	-0.8
1,861,714	+		HER17_RS08440	0.31	-1.7
1,861,714	+		HER17_RS08440	0.31	+0.8
1,861,714	+		HER17_RS08440	0.31	-0.7
1,861,715	-		HER17_RS08440	0.31	-0.4
1,861,786	+		HER17_RS08440	0.47	-1.2
1,861,786	+		HER17_RS08440	0.47	-2.0
1,861,787	-		HER17_RS08440	0.47	-0.0
1,861,838	+		HER17_RS08440	0.58	-0.0
1,861,838	+		HER17_RS08440	0.58	+0.4
1,861,839	-		HER17_RS08440	0.59	+0.1
1,861,839	-		HER17_RS08440	0.59	+0.4
1,861,865	-		HER17_RS08440	0.64	-0.5
1,861,865	-		HER17_RS08440	0.64	+1.2
1,861,988	+				+2.0
1,861,989	-				-0.8
1,861,989	-				-0.1
1,861,999	+				-0.3
1,862,000	-				-0.3
1,862,000	-				+0.1
1,862,017	+				+0.6
1,862,018	-				-0.0
1,862,035	+				+0.5
1,862,041	+				+0.6
1,862,042	-				-0.3
1,862,042	-				-0.0
1,862,042	-				-1.2
1,862,042	-				-1.0
1,862,046	+				-0.5
1,862,046	+				-0.4
1,862,047	-				-0.4
1,862,051	-				-1.0
1,862,054	+				+1.5
1,862,157	+				-1.3
1,862,157	+				+0.4
1,862,157	+				+0.4
1,862,168	+				-0.7
1,862,169	-				+1.3
1,862,202	+				-0.1
1,862,202	+				-0.4
1,862,202	+				-0.7
1,862,203	-				+0.5
1,862,235	+				-0.4
1,862,243	+				+0.5
1,862,269	+				+0.2
1,862,270	-				-0.0
1,862,270	-				+0.1
1,862,286	-				-0.5
1,862,326	+				+0.8
1,862,326	+				-0.7
1,862,326	+				-0.1
1,862,326	+				+0.6
1,862,341	-				+0.4
1,862,356	-				-0.1
1,862,476	-		HER17_RS08445	0.12	+0.9