Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS05960

Experiment: M9+glycerol

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHER17_RS05955 and HER17_RS05960 are separated by 43 nucleotidesHER17_RS05960 and HER17_RS05965 overlap by 10 nucleotides HER17_RS05955: HER17_RS05955 - 3-phenylpropionate MFS transporter, at 1,324,158 to 1,325,318 _RS05955 HER17_RS05960: HER17_RS05960 - DUF1007 family protein, at 1,325,362 to 1,326,021 _RS05960 HER17_RS05965: HER17_RS05965 - nickel/cobalt transporter, at 1,326,012 to 1,327,115 _RS05965 Position (kb) 1325 1326 1327Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1324.372 kb on + strand, within HER17_RS05955at 1324.373 kb on - strand, within HER17_RS05955at 1324.375 kb on + strand, within HER17_RS05955at 1324.375 kb on + strand, within HER17_RS05955at 1324.375 kb on + strand, within HER17_RS05955at 1324.376 kb on - strand, within HER17_RS05955at 1324.376 kb on - strand, within HER17_RS05955at 1324.376 kb on - strand, within HER17_RS05955at 1324.376 kb on - strand, within HER17_RS05955at 1324.450 kb on + strand, within HER17_RS05955at 1324.450 kb on + strand, within HER17_RS05955at 1324.451 kb on - strand, within HER17_RS05955at 1324.451 kb on - strand, within HER17_RS05955at 1324.542 kb on + strand, within HER17_RS05955at 1324.580 kb on + strand, within HER17_RS05955at 1324.614 kb on - strand, within HER17_RS05955at 1324.614 kb on - strand, within HER17_RS05955at 1324.669 kb on + strand, within HER17_RS05955at 1324.669 kb on + strand, within HER17_RS05955at 1324.669 kb on + strand, within HER17_RS05955at 1324.669 kb on + strand, within HER17_RS05955at 1324.669 kb on + strand, within HER17_RS05955at 1324.669 kb on + strand, within HER17_RS05955at 1324.670 kb on - strand, within HER17_RS05955at 1324.670 kb on - strand, within HER17_RS05955at 1324.670 kb on - strand, within HER17_RS05955at 1324.672 kb on + strand, within HER17_RS05955at 1324.672 kb on + strand, within HER17_RS05955at 1324.672 kb on + strand, within HER17_RS05955at 1324.673 kb on - strand, within HER17_RS05955at 1324.673 kb on - strand, within HER17_RS05955at 1324.673 kb on - strand, within HER17_RS05955at 1324.824 kb on + strand, within HER17_RS05955at 1324.824 kb on + strand, within HER17_RS05955at 1324.824 kb on + strand, within HER17_RS05955at 1324.824 kb on + strand, within HER17_RS05955at 1324.827 kb on + strand, within HER17_RS05955at 1324.827 kb on + strand, within HER17_RS05955at 1324.827 kb on + strand, within HER17_RS05955at 1324.827 kb on + strand, within HER17_RS05955at 1324.828 kb on - strand, within HER17_RS05955at 1324.828 kb on - strand, within HER17_RS05955at 1324.828 kb on - strand, within HER17_RS05955at 1324.828 kb on - strand, within HER17_RS05955at 1324.845 kb on + strand, within HER17_RS05955at 1324.926 kb on - strand, within HER17_RS05955at 1324.988 kb on - strand, within HER17_RS05955at 1325.056 kb on + strand, within HER17_RS05955at 1325.057 kb on - strand, within HER17_RS05955at 1325.057 kb on - strand, within HER17_RS05955at 1325.057 kb on - strand, within HER17_RS05955at 1325.057 kb on - strand, within HER17_RS05955at 1325.057 kb on - strand, within HER17_RS05955at 1325.151 kb on + strand, within HER17_RS05955at 1325.152 kb on - strand, within HER17_RS05955at 1325.152 kb on - strand, within HER17_RS05955at 1325.152 kb on - strand, within HER17_RS05955at 1325.298 kb on - strandat 1325.330 kb on + strandat 1325.330 kb on + strandat 1325.342 kb on - strandat 1325.342 kb on - strandat 1325.346 kb on + strandat 1325.346 kb on + strandat 1325.347 kb on - strandat 1325.347 kb on - strandat 1325.347 kb on - strandat 1325.347 kb on - strandat 1325.367 kb on - strandat 1325.371 kb on + strandat 1325.373 kb on + strandat 1325.374 kb on - strandat 1325.463 kb on + strand, within HER17_RS05960at 1325.463 kb on + strand, within HER17_RS05960at 1325.463 kb on + strand, within HER17_RS05960at 1325.464 kb on - strand, within HER17_RS05960at 1325.469 kb on + strand, within HER17_RS05960at 1325.469 kb on + strand, within HER17_RS05960at 1325.469 kb on + strand, within HER17_RS05960at 1325.470 kb on - strand, within HER17_RS05960at 1325.513 kb on + strand, within HER17_RS05960at 1325.513 kb on + strand, within HER17_RS05960at 1325.513 kb on + strand, within HER17_RS05960at 1325.514 kb on - strand, within HER17_RS05960at 1325.517 kb on + strand, within HER17_RS05960at 1325.517 kb on + strand, within HER17_RS05960at 1325.518 kb on - strand, within HER17_RS05960at 1325.518 kb on - strand, within HER17_RS05960at 1325.560 kb on + strand, within HER17_RS05960at 1325.560 kb on + strand, within HER17_RS05960at 1325.561 kb on - strand, within HER17_RS05960at 1325.645 kb on - strand, within HER17_RS05960at 1325.645 kb on - strand, within HER17_RS05960at 1325.655 kb on + strand, within HER17_RS05960at 1325.656 kb on - strand, within HER17_RS05960at 1325.684 kb on - strand, within HER17_RS05960at 1325.704 kb on + strand, within HER17_RS05960at 1325.799 kb on + strand, within HER17_RS05960at 1325.803 kb on + strand, within HER17_RS05960at 1325.812 kb on - strand, within HER17_RS05960at 1325.815 kb on + strand, within HER17_RS05960at 1325.815 kb on + strand, within HER17_RS05960at 1325.815 kb on + strand, within HER17_RS05960at 1325.816 kb on - strand, within HER17_RS05960at 1325.816 kb on - strand, within HER17_RS05960at 1325.826 kb on + strand, within HER17_RS05960at 1325.826 kb on + strand, within HER17_RS05960at 1325.834 kb on - strand, within HER17_RS05960at 1325.884 kb on - strand, within HER17_RS05960at 1325.899 kb on - strand, within HER17_RS05960at 1325.929 kb on + strand, within HER17_RS05960at 1325.946 kb on + strand, within HER17_RS05960at 1326.120 kb on + strandat 1326.120 kb on + strandat 1326.121 kb on - strandat 1326.121 kb on - strandat 1326.121 kb on - strandat 1326.121 kb on - strandat 1326.419 kb on - strand, within HER17_RS05965at 1326.419 kb on - strand, within HER17_RS05965at 1326.421 kb on + strand, within HER17_RS05965at 1326.455 kb on + strand, within HER17_RS05965at 1326.543 kb on + strand, within HER17_RS05965at 1326.543 kb on + strand, within HER17_RS05965at 1326.543 kb on + strand, within HER17_RS05965at 1326.543 kb on + strand, within HER17_RS05965at 1326.543 kb on + strand, within HER17_RS05965at 1326.543 kb on + strand, within HER17_RS05965at 1326.543 kb on + strand, within HER17_RS05965at 1326.543 kb on + strand, within HER17_RS05965at 1326.543 kb on + strand, within HER17_RS05965at 1326.544 kb on - strand, within HER17_RS05965at 1326.544 kb on - strand, within HER17_RS05965at 1326.544 kb on - strand, within HER17_RS05965at 1326.544 kb on - strand, within HER17_RS05965at 1326.544 kb on - strand, within HER17_RS05965at 1326.544 kb on - strand, within HER17_RS05965at 1326.544 kb on - strand, within HER17_RS05965at 1326.544 kb on - strand, within HER17_RS05965at 1326.544 kb on - strand, within HER17_RS05965at 1326.544 kb on - strand, within HER17_RS05965at 1326.544 kb on - strand, within HER17_RS05965at 1326.604 kb on + strand, within HER17_RS05965at 1326.605 kb on - strand, within HER17_RS05965at 1326.605 kb on - strand, within HER17_RS05965at 1326.605 kb on - strand, within HER17_RS05965at 1326.629 kb on + strand, within HER17_RS05965at 1326.635 kb on - strand, within HER17_RS05965at 1326.635 kb on - strand, within HER17_RS05965at 1326.650 kb on + strand, within HER17_RS05965at 1326.650 kb on + strand, within HER17_RS05965at 1326.651 kb on - strand, within HER17_RS05965at 1326.651 kb on - strand, within HER17_RS05965at 1326.651 kb on - strand, within HER17_RS05965at 1326.651 kb on - strand, within HER17_RS05965at 1326.671 kb on + strand, within HER17_RS05965at 1326.672 kb on - strand, within HER17_RS05965at 1326.822 kb on - strand, within HER17_RS05965at 1326.822 kb on - strand, within HER17_RS05965at 1326.822 kb on - strand, within HER17_RS05965at 1326.843 kb on - strand, within HER17_RS05965at 1326.859 kb on - strand, within HER17_RS05965at 1326.886 kb on + strand, within HER17_RS05965at 1326.964 kb on + strand, within HER17_RS05965at 1326.964 kb on + strand, within HER17_RS05965at 1326.964 kb on + strand, within HER17_RS05965at 1326.965 kb on - strand, within HER17_RS05965

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
remove
1,324,372 + HER17_RS05955 0.18 -0.1
1,324,373 - HER17_RS05955 0.19 -0.9
1,324,375 + HER17_RS05955 0.19 -0.9
1,324,375 + HER17_RS05955 0.19 -0.6
1,324,375 + HER17_RS05955 0.19 +0.3
1,324,376 - HER17_RS05955 0.19 -0.5
1,324,376 - HER17_RS05955 0.19 +1.5
1,324,376 - HER17_RS05955 0.19 -0.1
1,324,376 - HER17_RS05955 0.19 -0.4
1,324,450 + HER17_RS05955 0.25 -0.1
1,324,450 + HER17_RS05955 0.25 +0.6
1,324,451 - HER17_RS05955 0.25 +0.5
1,324,451 - HER17_RS05955 0.25 +0.4
1,324,542 + HER17_RS05955 0.33 +0.5
1,324,580 + HER17_RS05955 0.36 +0.3
1,324,614 - HER17_RS05955 0.39 +0.7
1,324,614 - HER17_RS05955 0.39 +0.8
1,324,669 + HER17_RS05955 0.44 +0.7
1,324,669 + HER17_RS05955 0.44 +0.3
1,324,669 + HER17_RS05955 0.44 -0.3
1,324,669 + HER17_RS05955 0.44 -0.4
1,324,669 + HER17_RS05955 0.44 +0.7
1,324,669 + HER17_RS05955 0.44 -1.7
1,324,670 - HER17_RS05955 0.44 +0.2
1,324,670 - HER17_RS05955 0.44 -0.1
1,324,670 - HER17_RS05955 0.44 +0.4
1,324,672 + HER17_RS05955 0.44 +0.2
1,324,672 + HER17_RS05955 0.44 -0.9
1,324,672 + HER17_RS05955 0.44 -0.3
1,324,673 - HER17_RS05955 0.44 -0.3
1,324,673 - HER17_RS05955 0.44 +0.1
1,324,673 - HER17_RS05955 0.44 -0.2
1,324,824 + HER17_RS05955 0.57 -0.7
1,324,824 + HER17_RS05955 0.57 +0.3
1,324,824 + HER17_RS05955 0.57 +1.8
1,324,824 + HER17_RS05955 0.57 +0.9
1,324,827 + HER17_RS05955 0.58 -0.9
1,324,827 + HER17_RS05955 0.58 -0.8
1,324,827 + HER17_RS05955 0.58 +1.7
1,324,827 + HER17_RS05955 0.58 +0.8
1,324,828 - HER17_RS05955 0.58 -1.2
1,324,828 - HER17_RS05955 0.58 -0.8
1,324,828 - HER17_RS05955 0.58 +0.7
1,324,828 - HER17_RS05955 0.58 +0.7
1,324,845 + HER17_RS05955 0.59 +0.6
1,324,926 - HER17_RS05955 0.66 +1.3
1,324,988 - HER17_RS05955 0.71 -0.6
1,325,056 + HER17_RS05955 0.77 +0.8
1,325,057 - HER17_RS05955 0.77 +0.0
1,325,057 - HER17_RS05955 0.77 +0.6
1,325,057 - HER17_RS05955 0.77 +0.1
1,325,057 - HER17_RS05955 0.77 +0.2
1,325,057 - HER17_RS05955 0.77 +1.0
1,325,151 + HER17_RS05955 0.86 +0.9
1,325,152 - HER17_RS05955 0.86 -0.8
1,325,152 - HER17_RS05955 0.86 -0.7
1,325,152 - HER17_RS05955 0.86 -0.3
1,325,298 - -0.1
1,325,330 + -0.1
1,325,330 + +1.5
1,325,342 - +0.2
1,325,342 - +0.5
1,325,346 + +0.9
1,325,346 + -0.3
1,325,347 - +2.6
1,325,347 - +0.5
1,325,347 - +0.7
1,325,347 - +0.8
1,325,367 - -0.5
1,325,371 + +0.6
1,325,373 + -0.7
1,325,374 - +0.3
1,325,463 + HER17_RS05960 0.15 -0.2
1,325,463 + HER17_RS05960 0.15 -0.4
1,325,463 + HER17_RS05960 0.15 -0.0
1,325,464 - HER17_RS05960 0.15 +0.8
1,325,469 + HER17_RS05960 0.16 -1.3
1,325,469 + HER17_RS05960 0.16 -0.0
1,325,469 + HER17_RS05960 0.16 +0.9
1,325,470 - HER17_RS05960 0.16 +0.8
1,325,513 + HER17_RS05960 0.23 -0.5
1,325,513 + HER17_RS05960 0.23 -0.7
1,325,513 + HER17_RS05960 0.23 +0.5
1,325,514 - HER17_RS05960 0.23 +0.7
1,325,517 + HER17_RS05960 0.23 +0.6
1,325,517 + HER17_RS05960 0.23 -0.4
1,325,518 - HER17_RS05960 0.24 +0.3
1,325,518 - HER17_RS05960 0.24 +1.1
1,325,560 + HER17_RS05960 0.30 +0.2
1,325,560 + HER17_RS05960 0.30 -0.2
1,325,561 - HER17_RS05960 0.30 +0.5
1,325,645 - HER17_RS05960 0.43 -0.1
1,325,645 - HER17_RS05960 0.43 -0.8
1,325,655 + HER17_RS05960 0.44 +1.6
1,325,656 - HER17_RS05960 0.45 -0.6
1,325,684 - HER17_RS05960 0.49 +1.1
1,325,704 + HER17_RS05960 0.52 +0.1
1,325,799 + HER17_RS05960 0.66 +0.1
1,325,803 + HER17_RS05960 0.67 +0.1
1,325,812 - HER17_RS05960 0.68 +1.1
1,325,815 + HER17_RS05960 0.69 -0.1
1,325,815 + HER17_RS05960 0.69 +0.3
1,325,815 + HER17_RS05960 0.69 -0.2
1,325,816 - HER17_RS05960 0.69 -2.3
1,325,816 - HER17_RS05960 0.69 +0.1
1,325,826 + HER17_RS05960 0.70 +0.9
1,325,826 + HER17_RS05960 0.70 +1.0
1,325,834 - HER17_RS05960 0.72 +0.8
1,325,884 - HER17_RS05960 0.79 +0.6
1,325,899 - HER17_RS05960 0.81 -0.5
1,325,929 + HER17_RS05960 0.86 -1.2
1,325,946 + HER17_RS05960 0.88 +0.6
1,326,120 + -0.0
1,326,120 + -0.0
1,326,121 - +0.4
1,326,121 - -1.2
1,326,121 - +1.9
1,326,121 - -0.7
1,326,419 - HER17_RS05965 0.37 -0.2
1,326,419 - HER17_RS05965 0.37 +0.1
1,326,421 + HER17_RS05965 0.37 +1.0
1,326,455 + HER17_RS05965 0.40 +0.0
1,326,543 + HER17_RS05965 0.48 +0.3
1,326,543 + HER17_RS05965 0.48 -0.0
1,326,543 + HER17_RS05965 0.48 +2.2
1,326,543 + HER17_RS05965 0.48 +0.8
1,326,543 + HER17_RS05965 0.48 +0.1
1,326,543 + HER17_RS05965 0.48 +0.8
1,326,543 + HER17_RS05965 0.48 -0.3
1,326,543 + HER17_RS05965 0.48 -1.0
1,326,543 + HER17_RS05965 0.48 -0.5
1,326,544 - HER17_RS05965 0.48 +0.3
1,326,544 - HER17_RS05965 0.48 -0.3
1,326,544 - HER17_RS05965 0.48 -0.4
1,326,544 - HER17_RS05965 0.48 -0.7
1,326,544 - HER17_RS05965 0.48 +0.6
1,326,544 - HER17_RS05965 0.48 -0.7
1,326,544 - HER17_RS05965 0.48 +0.2
1,326,544 - HER17_RS05965 0.48 +1.2
1,326,544 - HER17_RS05965 0.48 +1.3
1,326,544 - HER17_RS05965 0.48 +2.9
1,326,544 - HER17_RS05965 0.48 +0.0
1,326,604 + HER17_RS05965 0.54 +0.3
1,326,605 - HER17_RS05965 0.54 +0.2
1,326,605 - HER17_RS05965 0.54 +1.5
1,326,605 - HER17_RS05965 0.54 +0.1
1,326,629 + HER17_RS05965 0.56 -0.0
1,326,635 - HER17_RS05965 0.56 +0.7
1,326,635 - HER17_RS05965 0.56 +0.3
1,326,650 + HER17_RS05965 0.58 +0.2
1,326,650 + HER17_RS05965 0.58 +0.5
1,326,651 - HER17_RS05965 0.58 +0.5
1,326,651 - HER17_RS05965 0.58 -0.5
1,326,651 - HER17_RS05965 0.58 -0.2
1,326,651 - HER17_RS05965 0.58 -1.6
1,326,671 + HER17_RS05965 0.60 +0.1
1,326,672 - HER17_RS05965 0.60 -0.1
1,326,822 - HER17_RS05965 0.73 +1.1
1,326,822 - HER17_RS05965 0.73 -0.2
1,326,822 - HER17_RS05965 0.73 +0.3
1,326,843 - HER17_RS05965 0.75 +0.1
1,326,859 - HER17_RS05965 0.77 +0.6
1,326,886 + HER17_RS05965 0.79 -1.2
1,326,964 + HER17_RS05965 0.86 -0.3
1,326,964 + HER17_RS05965 0.86 +0.8
1,326,964 + HER17_RS05965 0.86 -0.6
1,326,965 - HER17_RS05965 0.86 -0.2

Or see this region's nucleotide sequence