Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS21445

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS21440 and HER17_RS21445 are separated by 143 nucleotidesHER17_RS21445 and HER17_RS21450 are separated by 59 nucleotides HER17_RS21440: HER17_RS21440 - nitrogen regulation protein NR(I), at 4,807,213 to 4,808,625 _RS21440 HER17_RS21445: HER17_RS21445 - YshB family small membrane protein, at 4,808,769 to 4,808,891 _RS21445 HER17_RS21450: HER17_RS21450 - oxygen-independent coproporphyrinogen III oxidase, at 4,808,951 to 4,810,324 _RS21450 Position (kb) 4808 4809Strain fitness (log2 ratio) -2 -1 0 1at 4807.792 kb on - strand, within HER17_RS21440at 4807.803 kb on + strand, within HER17_RS21440at 4807.803 kb on + strand, within HER17_RS21440at 4807.958 kb on + strand, within HER17_RS21440at 4807.958 kb on + strand, within HER17_RS21440at 4807.958 kb on + strand, within HER17_RS21440at 4807.959 kb on - strand, within HER17_RS21440at 4807.959 kb on - strand, within HER17_RS21440at 4807.959 kb on - strand, within HER17_RS21440at 4808.040 kb on + strand, within HER17_RS21440at 4808.040 kb on + strand, within HER17_RS21440at 4808.041 kb on - strand, within HER17_RS21440at 4808.185 kb on + strand, within HER17_RS21440at 4808.186 kb on - strand, within HER17_RS21440at 4808.258 kb on + strand, within HER17_RS21440at 4808.267 kb on + strand, within HER17_RS21440at 4808.342 kb on + strand, within HER17_RS21440at 4808.342 kb on + strand, within HER17_RS21440at 4808.342 kb on + strand, within HER17_RS21440at 4808.342 kb on + strand, within HER17_RS21440at 4808.343 kb on - strand, within HER17_RS21440at 4808.403 kb on + strand, within HER17_RS21440at 4808.403 kb on + strand, within HER17_RS21440at 4808.404 kb on - strand, within HER17_RS21440at 4808.404 kb on - strand, within HER17_RS21440at 4808.517 kb on + strandat 4808.518 kb on - strandat 4808.528 kb on + strandat 4808.528 kb on + strandat 4808.528 kb on + strandat 4808.536 kb on - strandat 4808.548 kb on - strandat 4808.586 kb on + strandat 4808.587 kb on - strandat 4808.598 kb on + strandat 4808.599 kb on - strandat 4808.599 kb on - strandat 4808.640 kb on + strandat 4808.672 kb on + strandat 4808.706 kb on - strandat 4808.717 kb on + strandat 4808.717 kb on + strandat 4808.718 kb on - strandat 4808.718 kb on - strandat 4808.718 kb on - strandat 4808.718 kb on - strandat 4808.718 kb on - strandat 4808.737 kb on + strandat 4808.737 kb on + strandat 4808.737 kb on + strandat 4808.737 kb on + strandat 4808.737 kb on + strandat 4808.738 kb on - strandat 4808.738 kb on - strandat 4808.738 kb on - strandat 4808.847 kb on - strand, within HER17_RS21445at 4808.876 kb on + strand, within HER17_RS21445at 4808.877 kb on - strand, within HER17_RS21445at 4808.877 kb on - strand, within HER17_RS21445at 4808.877 kb on - strand, within HER17_RS21445at 4808.895 kb on + strandat 4808.895 kb on + strandat 4808.896 kb on - strandat 4808.896 kb on - strandat 4808.923 kb on - strandat 4808.926 kb on - strandat 4808.926 kb on - strandat 4808.926 kb on - strandat 4808.989 kb on + strandat 4808.990 kb on - strandat 4808.993 kb on + strandat 4808.993 kb on + strandat 4808.993 kb on + strandat 4808.994 kb on - strandat 4808.994 kb on - strandat 4808.997 kb on + strandat 4808.997 kb on + strandat 4808.998 kb on - strandat 4808.998 kb on - strandat 4808.998 kb on - strandat 4809.013 kb on + strandat 4809.013 kb on + strandat 4809.019 kb on + strandat 4809.020 kb on - strandat 4809.073 kb on + strandat 4809.074 kb on - strandat 4809.129 kb on + strand, within HER17_RS21450at 4809.129 kb on + strand, within HER17_RS21450at 4809.129 kb on + strand, within HER17_RS21450at 4809.129 kb on + strand, within HER17_RS21450at 4809.150 kb on + strand, within HER17_RS21450at 4809.150 kb on + strand, within HER17_RS21450at 4809.151 kb on - strand, within HER17_RS21450at 4809.151 kb on - strand, within HER17_RS21450at 4809.151 kb on - strand, within HER17_RS21450at 4809.171 kb on + strand, within HER17_RS21450at 4809.171 kb on + strand, within HER17_RS21450at 4809.171 kb on + strand, within HER17_RS21450at 4809.171 kb on + strand, within HER17_RS21450at 4809.171 kb on + strand, within HER17_RS21450at 4809.171 kb on + strand, within HER17_RS21450at 4809.172 kb on - strand, within HER17_RS21450at 4809.172 kb on - strand, within HER17_RS21450at 4809.172 kb on - strand, within HER17_RS21450at 4809.172 kb on - strand, within HER17_RS21450at 4809.202 kb on + strand, within HER17_RS21450at 4809.202 kb on + strand, within HER17_RS21450at 4809.203 kb on - strand, within HER17_RS21450at 4809.243 kb on - strand, within HER17_RS21450at 4809.243 kb on - strand, within HER17_RS21450at 4809.285 kb on + strand, within HER17_RS21450at 4809.285 kb on + strand, within HER17_RS21450at 4809.286 kb on - strand, within HER17_RS21450at 4809.286 kb on - strand, within HER17_RS21450at 4809.288 kb on + strand, within HER17_RS21450at 4809.288 kb on + strand, within HER17_RS21450at 4809.289 kb on - strand, within HER17_RS21450at 4809.318 kb on + strand, within HER17_RS21450at 4809.318 kb on + strand, within HER17_RS21450at 4809.318 kb on + strand, within HER17_RS21450at 4809.318 kb on + strand, within HER17_RS21450at 4809.318 kb on + strand, within HER17_RS21450at 4809.319 kb on - strand, within HER17_RS21450at 4809.319 kb on - strand, within HER17_RS21450at 4809.319 kb on - strand, within HER17_RS21450at 4809.319 kb on - strand, within HER17_RS21450at 4809.319 kb on - strand, within HER17_RS21450at 4809.319 kb on - strand, within HER17_RS21450at 4809.319 kb on - strand, within HER17_RS21450at 4809.319 kb on - strand, within HER17_RS21450at 4809.319 kb on - strand, within HER17_RS21450at 4809.319 kb on - strand, within HER17_RS21450at 4809.319 kb on - strand, within HER17_RS21450at 4809.319 kb on - strand, within HER17_RS21450at 4809.319 kb on - strand, within HER17_RS21450at 4809.319 kb on - strand, within HER17_RS21450at 4809.319 kb on - strand, within HER17_RS21450at 4809.319 kb on - strand, within HER17_RS21450at 4809.319 kb on - strand, within HER17_RS21450at 4809.319 kb on - strand, within HER17_RS21450at 4809.319 kb on - strand, within HER17_RS21450at 4809.319 kb on - strand, within HER17_RS21450at 4809.319 kb on - strand, within HER17_RS21450at 4809.322 kb on + strand, within HER17_RS21450at 4809.322 kb on + strand, within HER17_RS21450at 4809.322 kb on + strand, within HER17_RS21450at 4809.323 kb on - strand, within HER17_RS21450at 4809.323 kb on - strand, within HER17_RS21450at 4809.323 kb on - strand, within HER17_RS21450at 4809.323 kb on - strand, within HER17_RS21450at 4809.323 kb on - strand, within HER17_RS21450at 4809.323 kb on - strand, within HER17_RS21450at 4809.323 kb on - strand, within HER17_RS21450at 4809.334 kb on + strand, within HER17_RS21450at 4809.335 kb on - strand, within HER17_RS21450at 4809.337 kb on + strand, within HER17_RS21450at 4809.338 kb on - strand, within HER17_RS21450at 4809.387 kb on + strand, within HER17_RS21450at 4809.388 kb on - strand, within HER17_RS21450at 4809.520 kb on + strand, within HER17_RS21450at 4809.521 kb on - strand, within HER17_RS21450at 4809.560 kb on - strand, within HER17_RS21450at 4809.565 kb on + strand, within HER17_RS21450at 4809.591 kb on - strand, within HER17_RS21450at 4809.600 kb on + strand, within HER17_RS21450at 4809.600 kb on + strand, within HER17_RS21450at 4809.600 kb on + strand, within HER17_RS21450at 4809.600 kb on + strand, within HER17_RS21450at 4809.600 kb on + strand, within HER17_RS21450at 4809.600 kb on + strand, within HER17_RS21450at 4809.600 kb on + strand, within HER17_RS21450at 4809.601 kb on - strand, within HER17_RS21450at 4809.601 kb on - strand, within HER17_RS21450at 4809.604 kb on + strand, within HER17_RS21450at 4809.604 kb on + strand, within HER17_RS21450at 4809.605 kb on - strand, within HER17_RS21450at 4809.605 kb on - strand, within HER17_RS21450at 4809.614 kb on - strand, within HER17_RS21450at 4809.648 kb on - strand, within HER17_RS21450at 4809.653 kb on - strand, within HER17_RS21450at 4809.653 kb on - strand, within HER17_RS21450at 4809.653 kb on - strand, within HER17_RS21450at 4809.799 kb on + strand, within HER17_RS21450at 4809.802 kb on + strand, within HER17_RS21450

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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4,807,792 - HER17_RS21440 0.41 +0.9
4,807,803 + HER17_RS21440 0.42 -1.1
4,807,803 + HER17_RS21440 0.42 +0.2
4,807,958 + HER17_RS21440 0.53 -0.1
4,807,958 + HER17_RS21440 0.53 +0.2
4,807,958 + HER17_RS21440 0.53 +1.2
4,807,959 - HER17_RS21440 0.53 +0.1
4,807,959 - HER17_RS21440 0.53 -0.8
4,807,959 - HER17_RS21440 0.53 -0.0
4,808,040 + HER17_RS21440 0.59 -0.5
4,808,040 + HER17_RS21440 0.59 -0.6
4,808,041 - HER17_RS21440 0.59 +0.0
4,808,185 + HER17_RS21440 0.69 +1.1
4,808,186 - HER17_RS21440 0.69 -0.1
4,808,258 + HER17_RS21440 0.74 +0.2
4,808,267 + HER17_RS21440 0.75 +1.1
4,808,342 + HER17_RS21440 0.80 +0.2
4,808,342 + HER17_RS21440 0.80 +0.5
4,808,342 + HER17_RS21440 0.80 +0.4
4,808,342 + HER17_RS21440 0.80 +0.1
4,808,343 - HER17_RS21440 0.80 -0.5
4,808,403 + HER17_RS21440 0.84 -0.8
4,808,403 + HER17_RS21440 0.84 -0.4
4,808,404 - HER17_RS21440 0.84 -0.4
4,808,404 - HER17_RS21440 0.84 +0.6
4,808,517 + -0.8
4,808,518 - -0.7
4,808,528 + -0.2
4,808,528 + -0.9
4,808,528 + +0.2
4,808,536 - -0.2
4,808,548 - +0.8
4,808,586 + -0.5
4,808,587 - -0.1
4,808,598 + -0.8
4,808,599 - -0.5
4,808,599 - +0.4
4,808,640 + +0.6
4,808,672 + -0.7
4,808,706 - -1.4
4,808,717 + -0.5
4,808,717 + +0.2
4,808,718 - -0.6
4,808,718 - -0.3
4,808,718 - -2.0
4,808,718 - +0.3
4,808,718 - -0.2
4,808,737 + -0.2
4,808,737 + +0.4
4,808,737 + -0.3
4,808,737 + +0.2
4,808,737 + -0.8
4,808,738 - +0.4
4,808,738 - -0.0
4,808,738 - +0.6
4,808,847 - HER17_RS21445 0.63 +1.1
4,808,876 + HER17_RS21445 0.87 -0.7
4,808,877 - HER17_RS21445 0.88 +0.1
4,808,877 - HER17_RS21445 0.88 -0.3
4,808,877 - HER17_RS21445 0.88 +0.6
4,808,895 + +0.3
4,808,895 + -0.2
4,808,896 - -0.3
4,808,896 - +0.0
4,808,923 - +0.3
4,808,926 - -1.2
4,808,926 - +0.6
4,808,926 - +0.2
4,808,989 + -0.7
4,808,990 - -0.5
4,808,993 + -0.2
4,808,993 + -0.1
4,808,993 + +1.4
4,808,994 - +0.0
4,808,994 - -1.8
4,808,997 + -0.2
4,808,997 + +0.1
4,808,998 - -0.7
4,808,998 - +0.3
4,808,998 - +0.5
4,809,013 + +0.9
4,809,013 + -0.4
4,809,019 + -1.1
4,809,020 - +0.0
4,809,073 + -1.6
4,809,074 - +0.5
4,809,129 + HER17_RS21450 0.13 +1.4
4,809,129 + HER17_RS21450 0.13 -0.2
4,809,129 + HER17_RS21450 0.13 +0.5
4,809,129 + HER17_RS21450 0.13 +0.6
4,809,150 + HER17_RS21450 0.14 +0.2
4,809,150 + HER17_RS21450 0.14 +0.3
4,809,151 - HER17_RS21450 0.15 +0.1
4,809,151 - HER17_RS21450 0.15 -0.0
4,809,151 - HER17_RS21450 0.15 -1.0
4,809,171 + HER17_RS21450 0.16 +0.4
4,809,171 + HER17_RS21450 0.16 -0.7
4,809,171 + HER17_RS21450 0.16 -0.5
4,809,171 + HER17_RS21450 0.16 -0.1
4,809,171 + HER17_RS21450 0.16 -0.2
4,809,171 + HER17_RS21450 0.16 -0.2
4,809,172 - HER17_RS21450 0.16 -0.3
4,809,172 - HER17_RS21450 0.16 +0.0
4,809,172 - HER17_RS21450 0.16 +0.1
4,809,172 - HER17_RS21450 0.16 -1.6
4,809,202 + HER17_RS21450 0.18 -0.3
4,809,202 + HER17_RS21450 0.18 +0.4
4,809,203 - HER17_RS21450 0.18 -0.1
4,809,243 - HER17_RS21450 0.21 -0.8
4,809,243 - HER17_RS21450 0.21 -0.4
4,809,285 + HER17_RS21450 0.24 -1.6
4,809,285 + HER17_RS21450 0.24 -0.6
4,809,286 - HER17_RS21450 0.24 -1.1
4,809,286 - HER17_RS21450 0.24 +0.3
4,809,288 + HER17_RS21450 0.25 -0.2
4,809,288 + HER17_RS21450 0.25 +0.2
4,809,289 - HER17_RS21450 0.25 -0.4
4,809,318 + HER17_RS21450 0.27 -0.4
4,809,318 + HER17_RS21450 0.27 -1.1
4,809,318 + HER17_RS21450 0.27 +0.5
4,809,318 + HER17_RS21450 0.27 +0.8
4,809,318 + HER17_RS21450 0.27 +0.8
4,809,319 - HER17_RS21450 0.27 +0.8
4,809,319 - HER17_RS21450 0.27 -0.2
4,809,319 - HER17_RS21450 0.27 -1.7
4,809,319 - HER17_RS21450 0.27 +0.7
4,809,319 - HER17_RS21450 0.27 +0.9
4,809,319 - HER17_RS21450 0.27 -0.3
4,809,319 - HER17_RS21450 0.27 -0.6
4,809,319 - HER17_RS21450 0.27 -0.2
4,809,319 - HER17_RS21450 0.27 +1.1
4,809,319 - HER17_RS21450 0.27 -0.7
4,809,319 - HER17_RS21450 0.27 -0.7
4,809,319 - HER17_RS21450 0.27 +0.6
4,809,319 - HER17_RS21450 0.27 +1.0
4,809,319 - HER17_RS21450 0.27 +0.7
4,809,319 - HER17_RS21450 0.27 +0.2
4,809,319 - HER17_RS21450 0.27 +0.3
4,809,319 - HER17_RS21450 0.27 +0.1
4,809,319 - HER17_RS21450 0.27 +1.3
4,809,319 - HER17_RS21450 0.27 +0.5
4,809,319 - HER17_RS21450 0.27 +0.3
4,809,319 - HER17_RS21450 0.27 +0.1
4,809,322 + HER17_RS21450 0.27 -0.4
4,809,322 + HER17_RS21450 0.27 +0.4
4,809,322 + HER17_RS21450 0.27 +0.7
4,809,323 - HER17_RS21450 0.27 -0.1
4,809,323 - HER17_RS21450 0.27 +0.7
4,809,323 - HER17_RS21450 0.27 -0.2
4,809,323 - HER17_RS21450 0.27 +0.9
4,809,323 - HER17_RS21450 0.27 -0.3
4,809,323 - HER17_RS21450 0.27 +0.2
4,809,323 - HER17_RS21450 0.27 -1.6
4,809,334 + HER17_RS21450 0.28 +0.3
4,809,335 - HER17_RS21450 0.28 +0.0
4,809,337 + HER17_RS21450 0.28 +0.4
4,809,338 - HER17_RS21450 0.28 +0.0
4,809,387 + HER17_RS21450 0.32 -0.7
4,809,388 - HER17_RS21450 0.32 -0.0
4,809,520 + HER17_RS21450 0.41 +0.6
4,809,521 - HER17_RS21450 0.41 -0.4
4,809,560 - HER17_RS21450 0.44 -0.2
4,809,565 + HER17_RS21450 0.45 +0.5
4,809,591 - HER17_RS21450 0.47 +0.1
4,809,600 + HER17_RS21450 0.47 +0.6
4,809,600 + HER17_RS21450 0.47 -0.5
4,809,600 + HER17_RS21450 0.47 -1.2
4,809,600 + HER17_RS21450 0.47 +1.0
4,809,600 + HER17_RS21450 0.47 -0.2
4,809,600 + HER17_RS21450 0.47 +0.1
4,809,600 + HER17_RS21450 0.47 +0.9
4,809,601 - HER17_RS21450 0.47 +1.0
4,809,601 - HER17_RS21450 0.47 +0.6
4,809,604 + HER17_RS21450 0.48 +0.5
4,809,604 + HER17_RS21450 0.48 -1.4
4,809,605 - HER17_RS21450 0.48 +0.2
4,809,605 - HER17_RS21450 0.48 -0.0
4,809,614 - HER17_RS21450 0.48 +0.1
4,809,648 - HER17_RS21450 0.51 +0.6
4,809,653 - HER17_RS21450 0.51 -0.3
4,809,653 - HER17_RS21450 0.51 +0.4
4,809,653 - HER17_RS21450 0.51 -0.1
4,809,799 + HER17_RS21450 0.62 -0.8
4,809,802 + HER17_RS21450 0.62 -0.8

Or see this region's nucleotide sequence