Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS20180

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
4,528,335	-		HER17_RS20175	0.64	-0.3
4,528,377	+		HER17_RS20175	0.66	+0.2
4,528,377	+		HER17_RS20175	0.66	+0.4
4,528,378	-		HER17_RS20175	0.66	+0.5
4,528,378	-		HER17_RS20175	0.66	-0.6
4,528,378	-		HER17_RS20175	0.66	+1.0
4,528,382	+		HER17_RS20175	0.67	-0.2
4,528,454	+		HER17_RS20175	0.70	+0.1
4,528,454	+		HER17_RS20175	0.70	+0.0
4,528,454	+		HER17_RS20175	0.70	+0.3
4,528,455	-		HER17_RS20175	0.70	+0.5
4,528,455	-		HER17_RS20175	0.70	+0.4
4,528,579	+		HER17_RS20175	0.77	+1.3
4,528,579	+		HER17_RS20175	0.77	+0.4
4,528,666	+		HER17_RS20175	0.81	+0.4
4,528,667	-		HER17_RS20175	0.81	+0.6
4,528,667	-		HER17_RS20175	0.81	-0.6
4,528,672	-		HER17_RS20175	0.82	+0.7
4,528,761	+		HER17_RS20175	0.86	+0.9
4,528,762	-		HER17_RS20175	0.86	+1.0
4,528,769	-		HER17_RS20175	0.87	-0.4
4,528,840	+				+0.7
4,528,866	+				-0.1
4,528,902	+				+0.3
4,528,903	-				+0.5
4,528,928	+				+1.6
4,528,928	+				+0.5
4,528,928	+				+0.3
4,528,931	-				+0.4
4,528,947	+				-0.5
4,528,953	-				+0.2
4,528,993	-				+0.8
4,528,996	-				+1.1
4,529,018	+				-0.9
4,529,099	+				-0.5
4,529,099	+				-0.5
4,529,099	+				+0.1
4,529,099	+				-0.1
4,529,100	-				-0.7
4,529,100	-				+0.3
4,529,100	-				+0.2
4,529,100	-				-0.3
4,529,100	-				-1.0
4,529,103	+				-0.3
4,529,103	+				-0.1
4,529,103	+				-0.4
4,529,103	+				+0.3
4,529,103	+				+0.1
4,529,103	+				+0.3
4,529,104	-				+0.0
4,529,104	-				+0.0
4,529,104	-				+0.1
4,529,104	-				-0.5
4,529,104	-				-0.9
4,529,104	-				+0.0
4,529,106	+				+0.3
4,529,106	+				-0.3
4,529,107	-				-0.3
4,529,124	+				-0.4
4,529,124	+				-1.1
4,529,138	+				-0.5
4,529,138	+				-1.1
4,529,138	+				+0.0
4,529,139	-				-1.3
4,529,139	-				+0.1
4,529,142	-				-0.6
4,529,142	-				-0.2
4,529,142	-				-0.9
4,529,147	+				+0.1
4,529,147	+				+0.3
4,529,148	-				-0.6
4,529,148	-				-0.3
4,529,150	+				-2.0
4,529,150	+				-1.1
4,529,151	-				+0.1
4,529,151	-				+0.1
4,529,151	-				+0.8
4,529,154	+				+0.4
4,529,154	+				-1.8
4,529,154	+				+0.8
4,529,154	+				+0.1
4,529,155	-				+1.1
4,529,155	-				+0.5
4,529,155	-				-0.4
4,529,155	-				+0.2
4,529,155	-				+0.2
4,529,155	-				-1.2
4,529,155	-				+0.9
4,529,155	-				+0.1
4,529,155	-				-0.4
4,529,156	+				+0.5
4,529,177	+				+1.1
4,529,178	-				+0.4
4,529,181	+				+0.2
4,529,182	-				+0.4
4,529,199	+				+1.4
4,529,199	+				+0.6
4,529,200	-				+1.1
4,529,200	-				-0.1
4,529,215	+				-0.1
4,529,215	+				+0.1
4,529,293	+				+0.8
4,529,293	+				-1.2
4,529,293	+				-1.9
4,529,293	+				-0.4
4,529,293	+				+0.6
4,529,293	+				-0.6
4,529,293	+				-1.0
4,529,294	-				+0.5
4,529,294	-				-0.4
4,529,294	-				+0.3
4,529,294	-				-1.5
4,529,294	-				+0.3
4,529,294	-				+0.2
4,529,303	+		HER17_RS20180	0.10	-2.3
4,529,321	+		HER17_RS20180	0.12	-0.1
4,529,321	+		HER17_RS20180	0.12	-0.7
4,529,322	-		HER17_RS20180	0.12	-0.3
4,529,322	-		HER17_RS20180	0.12	-0.2
4,529,322	-		HER17_RS20180	0.12	+1.3
4,529,322	-		HER17_RS20180	0.12	+1.1
4,529,326	-		HER17_RS20180	0.12	+0.6
4,529,326	-		HER17_RS20180	0.12	+0.2
4,529,326	-		HER17_RS20180	0.12	-0.1
4,529,326	-		HER17_RS20180	0.12	-0.4
4,529,327	+		HER17_RS20180	0.12	+0.5
4,529,327	+		HER17_RS20180	0.12	+0.7
4,529,328	-		HER17_RS20180	0.13	-1.3
4,529,328	-		HER17_RS20180	0.13	+0.8
4,529,568	-		HER17_RS20180	0.37	-0.0
4,529,713	+		HER17_RS20180	0.52	-0.0
4,529,713	+		HER17_RS20180	0.52	-1.6
4,529,713	+		HER17_RS20180	0.52	+0.3
4,529,714	-		HER17_RS20180	0.52	-0.3
4,529,714	-		HER17_RS20180	0.52	-0.4
4,529,714	-		HER17_RS20180	0.52	+0.7
4,529,718	+		HER17_RS20180	0.52	+0.6
4,529,718	+		HER17_RS20180	0.52	+0.2
4,529,760	+		HER17_RS20180	0.57	+0.3
4,529,904	+		HER17_RS20180	0.71	+0.7
4,529,905	-		HER17_RS20180	0.72	+1.6
4,529,905	-		HER17_RS20180	0.72	+0.0
4,529,972	+		HER17_RS20180	0.78	-0.4
4,529,972	+		HER17_RS20180	0.78	-1.5
4,529,973	-		HER17_RS20180	0.79	-0.9
4,529,978	-		HER17_RS20180	0.79	+0.2
4,529,982	-		HER17_RS20180	0.79	+0.7
4,529,982	-		HER17_RS20180	0.79	-2.0
4,530,078	+		HER17_RS20180	0.89	-0.3
4,530,078	+		HER17_RS20180	0.89	-0.9
4,530,079	-		HER17_RS20180	0.89	+0.0
4,530,161	+				-0.1
4,530,180	+				+0.6
4,530,198	+				-1.0
4,530,198	+				-0.3
4,530,198	+				-0.0
4,530,199	-				-0.1
4,530,199	-				-0.2
4,530,234	-				+0.1
4,530,241	+				+0.8
4,530,241	+				+0.6
4,530,241	+				+0.1
4,530,242	-				+1.4
4,530,283	+				-1.2
4,530,284	-				-0.6
4,530,334	+				+0.8
4,530,334	+				-1.2
4,530,334	+				+1.0
4,530,335	-				+0.6
4,530,353	+				-0.6
4,530,353	+				-0.3
4,530,353	+				+0.1
4,530,353	+				-0.7
4,530,354	-				+0.3
4,530,354	-				-0.7
4,530,354	-				-0.2
4,530,363	+				-1.7
4,530,363	+				-0.0
4,530,363	+				-0.2
4,530,363	+				+0.1
4,530,364	-				-0.6
4,530,364	-				-0.0
4,530,364	-				+1.0
4,530,364	-				+1.0
4,530,364	-				+2.1
4,530,364	-				+0.2
4,530,364	-				+1.2
4,530,385	+				+0.7
4,530,385	+				-0.3
4,530,385	+				-0.2
4,530,386	-				-0.7
4,530,392	+				+1.1
4,530,410	+				-0.6
4,530,416	+				-0.0
4,530,432	+				+0.3
4,530,433	-				+0.7
4,530,433	-				+0.1
4,530,449	+				+0.1
4,530,489	+				-1.8
4,530,489	+				+0.1
4,530,489	+				+0.6
4,530,489	+				-0.1
4,530,489	+				+0.0
4,530,490	-				+1.4
4,530,490	-				+0.2
4,530,491	+				+0.2
4,530,492	-				+0.6
4,530,492	-				+0.1
4,530,492	-				+0.6
4,530,492	-				+0.1
4,530,495	+				-0.0
4,530,495	+				+0.2
4,530,495	+				+0.3
4,530,495	+				-1.5
4,530,495	+				+0.8
4,530,496	-				-0.4
4,530,496	-				+0.4
4,530,496	-				-0.1
4,530,496	-				-0.5
4,530,496	-				-0.5
4,530,496	-				+0.1
4,530,514	-				-0.0
4,530,514	-				-0.1
4,530,538	+				+0.1
4,530,539	-				+1.4
4,530,539	-				-2.1
4,530,539	-				-0.1
4,530,541	+				+0.6
4,530,617	-				+0.4
4,530,617	-				+0.9
4,530,617	-				+0.6
4,530,633	-				+0.3
4,530,635	+				+0.6
4,530,649	-				+0.3
4,530,756	+		HER17_RS20185	0.19	+0.5
4,530,804	+		HER17_RS20185	0.24	-0.4
4,530,804	+		HER17_RS20185	0.24	+0.2
4,530,804	+		HER17_RS20185	0.24	+0.0
4,530,804	+		HER17_RS20185	0.24	+0.4
4,530,818	-		HER17_RS20185	0.26	+0.3
4,530,818	-		HER17_RS20185	0.26	+0.2
4,530,830	-		HER17_RS20185	0.27	-0.6
4,530,905	+		HER17_RS20185	0.34	-0.1
4,530,905	+		HER17_RS20185	0.34	-0.0
4,530,905	+		HER17_RS20185	0.34	-0.8
4,530,954	-		HER17_RS20185	0.39	-0.5
4,531,054	-		HER17_RS20185	0.49	+0.3
4,531,105	+		HER17_RS20185	0.54	-1.3
4,531,105	+		HER17_RS20185	0.54	+0.6
4,531,168	+		HER17_RS20185	0.60	+0.0
4,531,172	+		HER17_RS20185	0.61	-1.2
4,531,172	+		HER17_RS20185	0.61	-0.9
4,531,172	+		HER17_RS20185	0.61	+0.5
4,531,172	+		HER17_RS20185	0.61	-0.1
4,531,172	+		HER17_RS20185	0.61	+1.0
4,531,172	+		HER17_RS20185	0.61	-0.3
4,531,173	-		HER17_RS20185	0.61	+0.3