Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS16905

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
3,801,586	+				-0.2
3,801,587	-				-1.0
3,801,625	-				+0.0
3,801,688	+		HER17_RS16900	0.12	-0.0
3,801,688	+		HER17_RS16900	0.12	+0.5
3,801,688	+		HER17_RS16900	0.12	+1.3
3,801,689	-		HER17_RS16900	0.12	+1.5
3,801,689	-		HER17_RS16900	0.12	+0.5
3,801,689	-		HER17_RS16900	0.12	-0.1
3,801,689	-		HER17_RS16900	0.12	+0.8
3,801,689	-		HER17_RS16900	0.12	+2.6
3,801,703	+		HER17_RS16900	0.13	+0.4
3,801,704	-		HER17_RS16900	0.13	-0.4
3,801,707	+		HER17_RS16900	0.14	-0.4
3,801,707	+		HER17_RS16900	0.14	-0.2
3,801,707	+		HER17_RS16900	0.14	-0.2
3,801,708	-		HER17_RS16900	0.14	-0.5
3,801,708	-		HER17_RS16900	0.14	+0.0
3,801,708	-		HER17_RS16900	0.14	+0.1
3,801,708	-		HER17_RS16900	0.14	+1.3
3,801,740	+		HER17_RS16900	0.17	+0.3
3,801,740	+		HER17_RS16900	0.17	-0.1
3,801,740	+		HER17_RS16900	0.17	-1.3
3,801,741	-		HER17_RS16900	0.17	-0.8
3,801,742	+		HER17_RS16900	0.18	+1.6
3,801,742	+		HER17_RS16900	0.18	-0.9
3,801,742	+		HER17_RS16900	0.18	-0.6
3,801,742	+		HER17_RS16900	0.18	+0.5
3,801,743	-		HER17_RS16900	0.18	+0.3
3,801,743	-		HER17_RS16900	0.18	+0.4
3,801,743	-		HER17_RS16900	0.18	-0.2
3,801,743	-		HER17_RS16900	0.18	-1.3
3,801,794	-		HER17_RS16900	0.23	-0.4
3,801,847	+		HER17_RS16900	0.29	-2.3
3,801,848	-		HER17_RS16900	0.29	+0.4
3,801,916	-		HER17_RS16900	0.37	-0.1
3,801,916	-		HER17_RS16900	0.37	-0.6
3,801,949	+		HER17_RS16900	0.41	+0.5
3,801,950	-		HER17_RS16900	0.41	+0.5
3,802,192	+		HER17_RS16900	0.68	+0.7
3,802,193	-		HER17_RS16900	0.68	+0.7
3,802,193	-		HER17_RS16900	0.68	-0.1
3,802,193	-		HER17_RS16900	0.68	-0.1
3,802,193	-		HER17_RS16900	0.68	+0.0
3,802,196	+		HER17_RS16900	0.68	+0.0
3,802,196	+		HER17_RS16900	0.68	-0.1
3,802,250	+		HER17_RS16900	0.74	-0.9
3,802,250	+		HER17_RS16900	0.74	+0.2
3,802,250	+		HER17_RS16900	0.74	+1.0
3,802,250	+		HER17_RS16900	0.74	+0.2
3,802,250	+		HER17_RS16900	0.74	+0.7
3,802,251	-		HER17_RS16900	0.74	+0.3
3,802,251	-		HER17_RS16900	0.74	+0.6
3,802,251	-		HER17_RS16900	0.74	+0.2
3,802,253	+		HER17_RS16900	0.75	+0.9
3,802,253	+		HER17_RS16900	0.75	-0.2
3,802,253	+		HER17_RS16900	0.75	-0.1
3,802,254	-		HER17_RS16900	0.75	-0.4
3,802,254	-		HER17_RS16900	0.75	-0.0
3,802,254	-		HER17_RS16900	0.75	-0.2
3,802,254	-		HER17_RS16900	0.75	+0.6
3,802,254	-		HER17_RS16900	0.75	+0.3
3,802,270	+		HER17_RS16900	0.77	+0.4
3,802,270	+		HER17_RS16900	0.77	-0.5
3,802,270	+		HER17_RS16900	0.77	-1.1
3,802,270	+		HER17_RS16900	0.77	+0.3
3,802,275	+		HER17_RS16900	0.77	+0.6
3,802,276	-		HER17_RS16900	0.77	+0.9
3,802,346	-		HER17_RS16900	0.85	-1.0
3,802,369	-		HER17_RS16900	0.88	-0.1
3,802,437	-				-0.9
3,802,437	-				+1.1
3,802,463	+				+1.2
3,802,464	-				-0.1
3,802,487	+				+0.1
3,802,487	+				+0.0
3,802,487	+				+1.6
3,802,569	+				+0.6
3,802,570	-				+0.4
3,802,642	+		HER17_RS16905	0.12	-0.9
3,802,643	-		HER17_RS16905	0.13	-0.2
3,802,644	+		HER17_RS16905	0.13	-0.2
3,802,645	-		HER17_RS16905	0.13	-0.0
3,802,680	+		HER17_RS16905	0.19	+0.9
3,802,680	+		HER17_RS16905	0.19	-0.1
3,802,681	-		HER17_RS16905	0.19	-1.0
3,802,681	-		HER17_RS16905	0.19	+0.0
3,802,684	+		HER17_RS16905	0.20	-0.4
3,802,685	-		HER17_RS16905	0.20	-0.8
3,802,685	-		HER17_RS16905	0.20	+0.1
3,802,704	-		HER17_RS16905	0.23	-1.2
3,802,838	+		HER17_RS16905	0.47	+0.6
3,802,839	-		HER17_RS16905	0.47	-0.6
3,802,874	+		HER17_RS16905	0.53	-0.4
3,802,884	+		HER17_RS16905	0.55	-0.7
3,802,907	-		HER17_RS16905	0.59	-0.4
3,802,957	-		HER17_RS16905	0.67	+0.9
3,802,999	+		HER17_RS16905	0.75	-1.5
3,802,999	+		HER17_RS16905	0.75	-1.7
3,802,999	+		HER17_RS16905	0.75	+0.0
3,803,075	-		HER17_RS16905	0.88	+0.1
3,803,114	-				-0.4
3,803,158	-				-1.0
3,803,213	+				-0.7
3,803,217	-				+0.3
3,803,217	-				-0.6
3,803,327	+		HER17_RS16910	0.27	-0.5
3,803,333	+		HER17_RS16910	0.28	+0.4
3,803,443	+		HER17_RS16910	0.51	-0.2
3,803,444	-		HER17_RS16910	0.51	-0.9
3,803,494	+		HER17_RS16910	0.62	-0.3
3,803,495	-		HER17_RS16910	0.62	-0.9
3,803,495	-		HER17_RS16910	0.62	-0.4
3,803,503	+		HER17_RS16910	0.64	+1.1
3,803,503	+		HER17_RS16910	0.64	-0.5
3,803,529	+		HER17_RS16910	0.69	+0.1
3,803,533	+		HER17_RS16910	0.70	+0.1
3,803,542	-		HER17_RS16910	0.72	-0.8
3,803,574	+		HER17_RS16910	0.79	-0.4
3,803,579	+		HER17_RS16910	0.80	+0.7
3,803,580	-		HER17_RS16910	0.80	-0.2
3,803,580	-		HER17_RS16910	0.80	-0.1
3,803,609	+		HER17_RS16910	0.86	+0.8
3,803,664	+				-0.6
3,803,665	-				+0.2
3,803,667	+				-0.9
3,803,672	+				+1.1
3,803,672	+				+0.0
3,803,677	+				+1.2
3,803,710	-				+0.0
3,803,710	-				-0.4
3,803,798	+		HER17_RS16915	0.18	+0.1
3,803,832	-		HER17_RS16915	0.23	-1.4
3,803,833	+		HER17_RS16915	0.23	-1.3
3,803,833	+		HER17_RS16915	0.23	-1.6
3,803,879	+		HER17_RS16915	0.29	+0.3
3,803,880	-		HER17_RS16915	0.29	-0.2
3,803,880	-		HER17_RS16915	0.29	-0.6
3,803,880	-		HER17_RS16915	0.29	-0.5
3,803,883	+		HER17_RS16915	0.29	+0.0
3,803,883	+		HER17_RS16915	0.29	-1.6
3,803,899	+		HER17_RS16915	0.31	-0.3
3,803,954	+		HER17_RS16915	0.39	-0.8
3,803,955	-		HER17_RS16915	0.39	+0.7
3,803,963	+		HER17_RS16915	0.40	+0.7
3,803,963	+		HER17_RS16915	0.40	+0.1
3,803,964	-		HER17_RS16915	0.40	-0.4
3,803,964	-		HER17_RS16915	0.40	-0.6
3,803,964	-		HER17_RS16915	0.40	-1.1
3,804,004	+		HER17_RS16915	0.45	+0.6
3,804,004	+		HER17_RS16915	0.45	-1.3
3,804,105	+		HER17_RS16915	0.59	-1.5
3,804,141	+		HER17_RS16915	0.63	-0.6