Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS11425

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
2,538,768	+				+0.2
2,538,806	+				-1.1
2,538,848	+				-0.3
2,538,848	+				-0.8
2,538,848	+				+0.3
2,538,849	-				+0.1
2,538,849	-				-0.3
2,538,849	-				-0.5
2,538,862	+				-0.1
2,538,865	+				-1.1
2,538,866	-				-0.5
2,538,867	+				+0.1
2,538,867	+				-0.1
2,538,868	-				+1.0
2,538,910	+		HER17_RS11420	0.10	-1.0
2,538,910	+		HER17_RS11420	0.10	+1.0
2,538,911	-		HER17_RS11420	0.10	+0.5
2,538,929	+		HER17_RS11420	0.12	-0.1
2,538,971	+		HER17_RS11420	0.17	-1.1
2,538,972	-		HER17_RS11420	0.17	+0.4
2,539,031	+		HER17_RS11420	0.24	+0.3
2,539,031	+		HER17_RS11420	0.24	-0.2
2,539,032	-		HER17_RS11420	0.24	-0.7
2,539,032	-		HER17_RS11420	0.24	-0.7
2,539,032	-		HER17_RS11420	0.24	+0.1
2,539,035	+		HER17_RS11420	0.24	+0.3
2,539,036	-		HER17_RS11420	0.24	+0.9
2,539,074	+		HER17_RS11420	0.29	+1.1
2,539,075	-		HER17_RS11420	0.29	+0.6
2,539,087	-		HER17_RS11420	0.30	+1.2
2,539,101	+		HER17_RS11420	0.32	+0.8
2,539,101	+		HER17_RS11420	0.32	+0.3
2,539,130	+		HER17_RS11420	0.35	-0.4
2,539,131	-		HER17_RS11420	0.35	+0.1
2,539,131	-		HER17_RS11420	0.35	+0.3
2,539,134	-		HER17_RS11420	0.35	-0.7
2,539,134	-		HER17_RS11420	0.35	-0.8
2,539,134	-		HER17_RS11420	0.35	-0.0
2,539,134	-		HER17_RS11420	0.35	+0.9
2,539,134	-		HER17_RS11420	0.35	+0.3
2,539,134	-		HER17_RS11420	0.35	-0.5
2,539,134	-		HER17_RS11420	0.35	+0.8
2,539,134	-		HER17_RS11420	0.35	-1.1
2,539,144	+		HER17_RS11420	0.37	-0.9
2,539,144	+		HER17_RS11420	0.37	+0.7
2,539,145	-		HER17_RS11420	0.37	+0.1
2,539,209	+		HER17_RS11420	0.44	-0.5
2,539,324	+		HER17_RS11420	0.57	-0.1
2,539,324	+		HER17_RS11420	0.57	+0.1
2,539,325	-		HER17_RS11420	0.57	-0.4
2,539,325	-		HER17_RS11420	0.57	-0.4
2,539,365	-		HER17_RS11420	0.61	+0.2
2,539,365	-		HER17_RS11420	0.61	+0.2
2,539,433	-		HER17_RS11420	0.69	+0.2
2,539,441	+		HER17_RS11420	0.70	+0.4
2,539,499	+		HER17_RS11420	0.76	-0.0
2,539,499	+		HER17_RS11420	0.76	-0.1
2,539,499	+		HER17_RS11420	0.76	+0.7
2,539,499	+		HER17_RS11420	0.76	-0.3
2,539,499	+		HER17_RS11420	0.76	-0.0
2,539,500	-		HER17_RS11420	0.77	+0.3
2,539,500	-		HER17_RS11420	0.77	+0.1
2,539,535	+		HER17_RS11420	0.80	+0.2
2,539,536	-		HER17_RS11420	0.81	-0.1
2,539,536	-		HER17_RS11420	0.81	+0.3
2,539,550	+		HER17_RS11420	0.82	+0.7
2,539,550	+		HER17_RS11420	0.82	-0.5
2,539,551	-		HER17_RS11420	0.82	-0.5
2,539,551	-		HER17_RS11420	0.82	+0.3
2,539,551	-		HER17_RS11420	0.82	+0.2
2,539,552	+		HER17_RS11420	0.82	-1.4
2,539,552	+		HER17_RS11420	0.82	+0.4
2,539,552	+		HER17_RS11420	0.82	-0.4
2,539,552	+		HER17_RS11420	0.82	+0.7
2,539,553	-		HER17_RS11420	0.82	+0.2
2,539,553	-		HER17_RS11420	0.82	-0.7
2,539,553	-		HER17_RS11420	0.82	-0.2
2,539,553	-		HER17_RS11420	0.82	-0.7
2,539,553	-		HER17_RS11420	0.82	-0.5
2,539,553	-		HER17_RS11420	0.82	-2.1
2,539,556	+		HER17_RS11420	0.83	+0.7
2,539,556	+		HER17_RS11420	0.83	+0.1
2,539,556	+		HER17_RS11420	0.83	-0.3
2,539,557	-		HER17_RS11420	0.83	-0.4
2,539,557	-		HER17_RS11420	0.83	-0.0
2,539,557	-		HER17_RS11420	0.83	-0.4
2,539,557	-		HER17_RS11420	0.83	+0.3
2,539,557	-		HER17_RS11420	0.83	+1.0
2,539,557	-		HER17_RS11420	0.83	-0.8
2,539,557	-		HER17_RS11420	0.83	-1.3
2,539,557	-		HER17_RS11420	0.83	+0.1
2,539,562	-		HER17_RS11420	0.84	+0.1
2,539,643	-				-0.1
2,539,727	+				+0.2
2,539,801	-		HER17_RS11425	0.11	-0.1
2,539,807	+		HER17_RS11425	0.12	+0.1
2,539,825	+		HER17_RS11425	0.14	+0.3
2,539,892	+		HER17_RS11425	0.21	-0.0
2,539,893	-		HER17_RS11425	0.21	-0.6
2,539,977	+		HER17_RS11425	0.30	-0.5
2,539,978	-		HER17_RS11425	0.31	+0.2
2,539,978	-		HER17_RS11425	0.31	+0.0
2,539,999	-		HER17_RS11425	0.33	-1.4
2,540,049	+		HER17_RS11425	0.38	+0.2
2,540,050	-		HER17_RS11425	0.39	-0.3
2,540,184	+		HER17_RS11425	0.53	-0.4
2,540,184	+		HER17_RS11425	0.53	+0.6
2,540,185	-		HER17_RS11425	0.53	-0.1
2,540,185	-		HER17_RS11425	0.53	-0.8
2,540,185	-		HER17_RS11425	0.53	-0.3
2,540,185	-		HER17_RS11425	0.53	-0.5
2,540,188	+		HER17_RS11425	0.54	+0.6
2,540,189	-		HER17_RS11425	0.54	-0.5
2,540,196	+		HER17_RS11425	0.55	+0.1
2,540,196	+		HER17_RS11425	0.55	+0.1
2,540,197	-		HER17_RS11425	0.55	-0.6
2,540,197	-		HER17_RS11425	0.55	-1.4
2,540,263	+		HER17_RS11425	0.62	-2.1
2,540,264	-		HER17_RS11425	0.62	+0.4
2,540,325	+		HER17_RS11425	0.69	-1.4
2,540,325	+		HER17_RS11425	0.69	+0.9
2,540,326	-		HER17_RS11425	0.69	+0.4
2,540,326	-		HER17_RS11425	0.69	-0.2
2,540,326	-		HER17_RS11425	0.69	-0.2
2,540,418	+		HER17_RS11425	0.79	-0.9
2,540,418	+		HER17_RS11425	0.79	-0.5
2,540,419	-		HER17_RS11425	0.79	+0.1
2,540,419	-		HER17_RS11425	0.79	+1.0
2,540,425	-		HER17_RS11425	0.80	-0.4
2,540,435	+		HER17_RS11425	0.81	+0.1
2,540,469	-		HER17_RS11425	0.85	-0.6
2,540,469	-		HER17_RS11425	0.85	-0.1
2,540,541	-				+0.7
2,540,541	-				-3.3
2,540,565	+				+0.3
2,540,566	-				-0.1
2,540,566	-				+0.2
2,540,566	-				-2.0
2,540,572	+				-1.3
2,540,572	+				-0.3
2,540,572	+				+0.1
2,540,572	+				+1.3
2,540,573	-				+1.6
2,540,573	-				+0.6
2,540,604	+				-0.6
2,540,616	+				+0.5
2,540,616	+				-0.4
2,540,617	-				-0.0
2,540,617	-				-0.3
2,540,617	-				-0.1
2,540,657	-				+0.1
2,540,657	-				+0.4
2,540,657	-				-0.4
2,540,700	+				+0.4
2,540,873	-		HER17_RS11430	0.22	-0.3
2,540,873	-		HER17_RS11430	0.22	+0.5
2,540,881	+		HER17_RS11430	0.23	-1.1
2,540,898	-		HER17_RS11430	0.25	+0.2
2,541,053	+		HER17_RS11430	0.38	+0.8
2,541,069	+		HER17_RS11430	0.40	+0.4
2,541,148	-		HER17_RS11430	0.47	+1.5
2,541,162	+		HER17_RS11430	0.48	+0.0
2,541,200	+		HER17_RS11430	0.51	+0.2
2,541,201	-		HER17_RS11430	0.52	+0.3
2,541,201	-		HER17_RS11430	0.52	+0.4
2,541,201	-		HER17_RS11430	0.52	+0.1
2,541,202	+		HER17_RS11430	0.52	+0.3
2,541,202	+		HER17_RS11430	0.52	+0.3
2,541,203	-		HER17_RS11430	0.52	+0.0
2,541,203	-		HER17_RS11430	0.52	-0.1
2,541,361	-		HER17_RS11430	0.66	+0.3
2,541,428	+		HER17_RS11430	0.72	-2.1
2,541,428	+		HER17_RS11430	0.72	+0.6
2,541,428	+		HER17_RS11430	0.72	-1.5
2,541,429	-		HER17_RS11430	0.72	+0.3
2,541,429	-		HER17_RS11430	0.72	-1.3
2,541,460	+		HER17_RS11430	0.74	+1.6
2,541,460	+		HER17_RS11430	0.74	+0.0
2,541,460	+		HER17_RS11430	0.74	-1.3
2,541,460	+		HER17_RS11430	0.74	-0.2
2,541,461	-		HER17_RS11430	0.75	-1.0
2,541,461	-		HER17_RS11430	0.75	+0.2
2,541,461	-		HER17_RS11430	0.75	-0.0
2,541,461	-		HER17_RS11430	0.75	+0.3
2,541,461	-		HER17_RS11430	0.75	+0.5
2,541,499	+		HER17_RS11430	0.78	-0.2
2,541,560	+		HER17_RS11430	0.83	+0.1
2,541,585	+		HER17_RS11430	0.86	+0.5
2,541,586	-		HER17_RS11430	0.86	+0.3
2,541,589	+		HER17_RS11430	0.86	-0.4
2,541,590	-		HER17_RS11430	0.86	+0.3
2,541,590	-		HER17_RS11430	0.86	+0.5
2,541,594	+		HER17_RS11430	0.86	-1.7