Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS11210

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
2,497,697	+		HER17_RS11205	0.20	+1.1
2,497,746	+		HER17_RS11205	0.26	-0.4
2,497,757	-		HER17_RS11205	0.27	-0.8
2,497,759	-		HER17_RS11205	0.27	+0.7
2,497,759	-		HER17_RS11205	0.27	+0.4
2,497,876	+		HER17_RS11205	0.40	-1.9
2,497,877	-		HER17_RS11205	0.40	+0.4
2,497,877	-		HER17_RS11205	0.40	-0.1
2,497,920	-		HER17_RS11205	0.45	-0.7
2,497,920	-		HER17_RS11205	0.45	-0.4
2,497,920	-		HER17_RS11205	0.45	+0.0
2,497,935	+		HER17_RS11205	0.47	-0.1
2,497,948	+		HER17_RS11205	0.48	+0.2
2,498,004	+		HER17_RS11205	0.54	+0.4
2,498,030	+		HER17_RS11205	0.57	-0.9
2,498,031	-		HER17_RS11205	0.57	+0.5
2,498,031	-		HER17_RS11205	0.57	-0.3
2,498,061	-		HER17_RS11205	0.61	+0.3
2,498,061	-		HER17_RS11205	0.61	-0.5
2,498,061	-		HER17_RS11205	0.61	+0.1
2,498,248	-		HER17_RS11205	0.82	+0.7
2,498,477	-				-0.5
2,498,485	+				+0.6
2,498,485	+				-0.7
2,498,486	-				+3.1
2,498,486	-				-0.7
2,498,486	-				-0.6
2,498,572	-				+0.0
2,498,573	+				+0.4
2,498,573	+				+0.4
2,498,574	-				-0.2
2,498,578	-				+0.5
2,498,624	-				-1.3
2,498,639	+				-0.2
2,498,650	+				+0.6
2,498,650	+				-0.1
2,498,650	+				-0.3
2,498,651	-				-0.4
2,498,651	-				-0.5
2,498,651	-				+0.9
2,498,651	-				-1.5
2,498,675	-				-0.7
2,498,676	+				+0.7
2,498,742	+				+0.4
2,498,743	-				-0.2
2,498,754	-				-1.0
2,498,787	-				+0.5
2,498,801	+				+0.2
2,498,849	+		HER17_RS11210	0.12	-0.5
2,498,850	-		HER17_RS11210	0.12	+0.2
2,498,859	+		HER17_RS11210	0.12	+0.5
2,498,859	+		HER17_RS11210	0.12	-0.0
2,498,859	+		HER17_RS11210	0.12	+1.3
2,498,859	+		HER17_RS11210	0.12	-0.5
2,498,860	-		HER17_RS11210	0.12	-0.1
2,498,860	-		HER17_RS11210	0.12	-1.0
2,498,876	+		HER17_RS11210	0.13	+0.2
2,498,876	+		HER17_RS11210	0.13	-0.0
2,498,877	-		HER17_RS11210	0.13	-1.0
2,498,925	-		HER17_RS11210	0.17	-1.0
2,498,925	-		HER17_RS11210	0.17	+0.0
2,498,966	-		HER17_RS11210	0.19	+1.5
2,498,987	+		HER17_RS11210	0.21	-0.9
2,499,070	+		HER17_RS11210	0.26	+0.4
2,499,070	+		HER17_RS11210	0.26	-0.3
2,499,074	+		HER17_RS11210	0.26	-0.0
2,499,075	-		HER17_RS11210	0.26	-0.3
2,499,116	+		HER17_RS11210	0.29	+0.7
2,499,137	+		HER17_RS11210	0.30	-0.3
2,499,137	+		HER17_RS11210	0.30	+0.7
2,499,138	-		HER17_RS11210	0.30	-0.1
2,499,138	-		HER17_RS11210	0.30	-0.3
2,499,138	-		HER17_RS11210	0.30	+0.4
2,499,140	-		HER17_RS11210	0.31	-0.9
2,499,140	-		HER17_RS11210	0.31	+0.0
2,499,189	+		HER17_RS11210	0.34	-0.7
2,499,190	-		HER17_RS11210	0.34	+0.3
2,499,216	-		HER17_RS11210	0.35	-0.1
2,499,230	+		HER17_RS11210	0.36	-0.1
2,499,232	+		HER17_RS11210	0.37	+0.4
2,499,233	-		HER17_RS11210	0.37	+0.2
2,499,233	-		HER17_RS11210	0.37	+0.5
2,499,543	-		HER17_RS11210	0.57	+0.1
2,499,563	+		HER17_RS11210	0.58	-1.0
2,499,564	-		HER17_RS11210	0.58	-0.4
2,499,564	-		HER17_RS11210	0.58	+1.0
2,499,629	+		HER17_RS11210	0.62	+0.6
2,499,646	+		HER17_RS11210	0.63	+0.5
2,499,647	-		HER17_RS11210	0.63	+0.7
2,499,653	+		HER17_RS11210	0.64	+0.3
2,499,656	+		HER17_RS11210	0.64	+0.1
2,499,657	-		HER17_RS11210	0.64	-0.1
2,499,657	-		HER17_RS11210	0.64	+0.2
2,499,712	+		HER17_RS11210	0.68	+0.2
2,499,712	+		HER17_RS11210	0.68	+0.2
2,499,713	-		HER17_RS11210	0.68	-0.3
2,499,713	-		HER17_RS11210	0.68	+0.3
2,499,713	-		HER17_RS11210	0.68	+0.0
2,499,713	-		HER17_RS11210	0.68	-0.3
2,499,713	-		HER17_RS11210	0.68	-0.0
2,499,871	+		HER17_RS11210	0.78	+0.6
2,499,871	+		HER17_RS11210	0.78	-0.2
2,499,871	+		HER17_RS11210	0.78	-0.7
2,499,895	+		HER17_RS11210	0.80	+0.4
2,499,896	-		HER17_RS11210	0.80	+0.2
2,499,896	-		HER17_RS11210	0.80	-0.4
2,499,900	-		HER17_RS11210	0.80	+0.4
2,499,968	+		HER17_RS11210	0.84	+0.7
2,499,969	-		HER17_RS11210	0.84	+1.4
2,499,969	-		HER17_RS11210	0.84	-2.4
2,500,046	+		HER17_RS11210	0.89	+0.9
2,500,047	-		HER17_RS11210	0.89	-0.4
2,500,081	+				-0.2
2,500,130	+				+0.2
2,500,130	+				+0.1
2,500,209	-				+0.7
2,500,310	-				-0.6
2,500,318	-				-0.2
2,500,353	-				+1.3
2,500,353	-				-0.3
2,500,353	-				-0.1
2,500,354	-				+0.9
2,500,415	-		HER17_RS11215	0.15	+0.3
2,500,495	+		HER17_RS11215	0.26	+1.3
2,500,512	-		HER17_RS11215	0.28	-0.0
2,500,512	-		HER17_RS11215	0.28	+0.1
2,500,513	+		HER17_RS11215	0.28	-0.3
2,500,513	+		HER17_RS11215	0.28	-0.9
2,500,513	+		HER17_RS11215	0.28	+0.5
2,500,514	-		HER17_RS11215	0.29	-0.6
2,500,514	-		HER17_RS11215	0.29	+0.3
2,500,514	-		HER17_RS11215	0.29	+0.3
2,500,514	-		HER17_RS11215	0.29	+0.0
2,500,515	+		HER17_RS11215	0.29	+0.3
2,500,516	-		HER17_RS11215	0.29	+0.1
2,500,516	-		HER17_RS11215	0.29	+0.0
2,500,547	-		HER17_RS11215	0.33	+0.9
2,500,644	+		HER17_RS11215	0.47	-0.4
2,500,647	+		HER17_RS11215	0.47	-0.7
2,500,647	+		HER17_RS11215	0.47	-0.8
2,500,647	+		HER17_RS11215	0.47	+1.0
2,500,648	-		HER17_RS11215	0.47	+0.0
2,500,875	+		HER17_RS11215	0.79	-0.7
2,500,876	-		HER17_RS11215	0.79	-0.6
2,500,890	-		HER17_RS11215	0.81	-0.3
2,500,892	+		HER17_RS11215	0.81	+0.9
2,500,892	+		HER17_RS11215	0.81	+0.1
2,500,893	-		HER17_RS11215	0.81	+0.2
2,500,893	-		HER17_RS11215	0.81	+0.3
2,500,893	-		HER17_RS11215	0.81	+0.0
2,500,968	+				-1.7
2,500,969	-				-0.9
2,500,970	+				-0.6
2,500,971	-				-0.4
2,500,971	-				-1.7
2,500,971	-				+0.9
2,500,985	-				+0.0
2,500,985	-				+0.9
2,500,985	-				+0.7
2,500,985	-				+0.9
2,501,019	+				+0.2
2,501,020	-				+0.1
2,501,020	-				+0.0
2,501,073	+				-0.4
2,501,073	+				-1.7
2,501,074	-				+0.2
2,501,097	+				-0.7
2,501,098	-				+0.8
2,501,099	+				+0.5