Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS06320

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS06315 and HER17_RS06320 overlap by 4 nucleotidesHER17_RS06320 and HER17_RS06325 overlap by 1 nucleotides HER17_RS06315: HER17_RS06315 - multidrug efflux RND transporter permease subunit MdtC, at 1,398,638 to 1,401,718 _RS06315 HER17_RS06320: HER17_RS06320 - MdtB/MuxB family multidrug efflux RND transporter permease subunit, at 1,401,715 to 1,404,837 _RS06320 HER17_RS06325: HER17_RS06325 - MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit, at 1,404,837 to 1,406,072 _RS06325 Position (kb) 1401 1402 1403 1404 1405Strain fitness (log2 ratio) -2 -1 0 1 2at 1400.775 kb on - strand, within HER17_RS06315at 1400.933 kb on + strand, within HER17_RS06315at 1400.934 kb on - strand, within HER17_RS06315at 1400.976 kb on + strand, within HER17_RS06315at 1400.976 kb on + strand, within HER17_RS06315at 1400.997 kb on + strand, within HER17_RS06315at 1400.998 kb on - strand, within HER17_RS06315at 1401.033 kb on - strand, within HER17_RS06315at 1401.033 kb on - strand, within HER17_RS06315at 1401.107 kb on + strand, within HER17_RS06315at 1401.108 kb on - strand, within HER17_RS06315at 1401.133 kb on + strand, within HER17_RS06315at 1401.242 kb on - strand, within HER17_RS06315at 1401.242 kb on - strand, within HER17_RS06315at 1401.273 kb on + strand, within HER17_RS06315at 1401.273 kb on + strand, within HER17_RS06315at 1401.273 kb on + strand, within HER17_RS06315at 1401.273 kb on + strand, within HER17_RS06315at 1401.273 kb on + strand, within HER17_RS06315at 1401.273 kb on + strand, within HER17_RS06315at 1401.274 kb on - strand, within HER17_RS06315at 1401.333 kb on + strand, within HER17_RS06315at 1401.334 kb on - strand, within HER17_RS06315at 1401.419 kb on - strandat 1401.433 kb on + strandat 1401.454 kb on + strandat 1401.454 kb on + strandat 1401.455 kb on - strandat 1401.455 kb on - strandat 1401.457 kb on + strandat 1401.638 kb on + strandat 1401.639 kb on - strandat 1401.641 kb on + strandat 1401.641 kb on + strandat 1401.642 kb on - strandat 1401.782 kb on + strandat 1401.782 kb on + strandat 1401.840 kb on + strandat 1401.840 kb on + strandat 1401.841 kb on - strandat 1401.841 kb on - strandat 1401.965 kb on + strandat 1401.977 kb on + strandat 1401.978 kb on - strandat 1402.149 kb on + strand, within HER17_RS06320at 1402.173 kb on + strand, within HER17_RS06320at 1402.173 kb on + strand, within HER17_RS06320at 1402.174 kb on - strand, within HER17_RS06320at 1402.174 kb on - strand, within HER17_RS06320at 1402.185 kb on - strand, within HER17_RS06320at 1402.186 kb on + strand, within HER17_RS06320at 1402.187 kb on - strand, within HER17_RS06320at 1402.187 kb on - strand, within HER17_RS06320at 1402.205 kb on + strand, within HER17_RS06320at 1402.205 kb on + strand, within HER17_RS06320at 1402.205 kb on + strand, within HER17_RS06320at 1402.206 kb on - strand, within HER17_RS06320at 1402.206 kb on - strand, within HER17_RS06320at 1402.206 kb on - strand, within HER17_RS06320at 1402.206 kb on - strand, within HER17_RS06320at 1402.206 kb on - strand, within HER17_RS06320at 1402.206 kb on - strand, within HER17_RS06320at 1402.576 kb on - strand, within HER17_RS06320at 1402.577 kb on + strand, within HER17_RS06320at 1402.577 kb on + strand, within HER17_RS06320at 1402.577 kb on + strand, within HER17_RS06320at 1402.577 kb on + strand, within HER17_RS06320at 1402.577 kb on + strand, within HER17_RS06320at 1402.577 kb on + strand, within HER17_RS06320at 1402.578 kb on - strand, within HER17_RS06320at 1402.578 kb on - strand, within HER17_RS06320at 1402.578 kb on - strand, within HER17_RS06320at 1402.578 kb on - strand, within HER17_RS06320at 1402.578 kb on - strand, within HER17_RS06320at 1402.614 kb on - strand, within HER17_RS06320at 1402.614 kb on - strand, within HER17_RS06320at 1402.614 kb on - strand, within HER17_RS06320at 1402.641 kb on + strand, within HER17_RS06320at 1402.641 kb on + strand, within HER17_RS06320at 1402.641 kb on + strand, within HER17_RS06320at 1402.641 kb on + strand, within HER17_RS06320at 1402.641 kb on + strand, within HER17_RS06320at 1402.642 kb on - strand, within HER17_RS06320at 1402.642 kb on - strand, within HER17_RS06320at 1402.642 kb on - strand, within HER17_RS06320at 1402.642 kb on - strand, within HER17_RS06320at 1402.642 kb on - strand, within HER17_RS06320at 1402.727 kb on - strand, within HER17_RS06320at 1402.806 kb on + strand, within HER17_RS06320at 1402.806 kb on + strand, within HER17_RS06320at 1402.807 kb on - strand, within HER17_RS06320at 1402.807 kb on - strand, within HER17_RS06320at 1402.869 kb on - strand, within HER17_RS06320at 1402.930 kb on - strand, within HER17_RS06320at 1402.930 kb on - strand, within HER17_RS06320at 1403.085 kb on + strand, within HER17_RS06320at 1403.175 kb on + strand, within HER17_RS06320at 1403.176 kb on - strand, within HER17_RS06320at 1403.177 kb on + strand, within HER17_RS06320at 1403.178 kb on - strand, within HER17_RS06320at 1403.178 kb on - strand, within HER17_RS06320at 1403.178 kb on - strand, within HER17_RS06320at 1403.192 kb on - strand, within HER17_RS06320at 1403.400 kb on + strand, within HER17_RS06320at 1403.457 kb on + strand, within HER17_RS06320at 1403.458 kb on - strand, within HER17_RS06320at 1403.458 kb on - strand, within HER17_RS06320at 1403.461 kb on + strand, within HER17_RS06320at 1403.461 kb on + strand, within HER17_RS06320at 1403.462 kb on - strand, within HER17_RS06320at 1403.462 kb on - strand, within HER17_RS06320at 1403.573 kb on + strand, within HER17_RS06320at 1403.656 kb on - strand, within HER17_RS06320at 1403.678 kb on + strand, within HER17_RS06320at 1403.678 kb on + strand, within HER17_RS06320at 1403.679 kb on - strand, within HER17_RS06320at 1403.679 kb on - strand, within HER17_RS06320at 1403.762 kb on + strand, within HER17_RS06320at 1403.763 kb on - strand, within HER17_RS06320at 1403.907 kb on + strand, within HER17_RS06320at 1403.907 kb on + strand, within HER17_RS06320at 1403.907 kb on + strand, within HER17_RS06320at 1403.907 kb on + strand, within HER17_RS06320at 1403.907 kb on + strand, within HER17_RS06320at 1403.907 kb on + strand, within HER17_RS06320at 1403.907 kb on + strand, within HER17_RS06320at 1403.907 kb on + strand, within HER17_RS06320at 1403.908 kb on - strand, within HER17_RS06320at 1403.908 kb on - strand, within HER17_RS06320at 1403.908 kb on - strand, within HER17_RS06320at 1403.908 kb on - strand, within HER17_RS06320at 1403.908 kb on - strand, within HER17_RS06320at 1403.910 kb on + strand, within HER17_RS06320at 1403.910 kb on + strand, within HER17_RS06320at 1403.910 kb on + strand, within HER17_RS06320at 1404.187 kb on - strand, within HER17_RS06320at 1404.287 kb on - strand, within HER17_RS06320at 1404.289 kb on + strand, within HER17_RS06320at 1404.393 kb on + strand, within HER17_RS06320at 1404.426 kb on - strand, within HER17_RS06320at 1404.514 kb on + strand, within HER17_RS06320at 1404.667 kb on - strandat 1404.736 kb on - strandat 1404.789 kb on + strandat 1404.790 kb on - strandat 1404.790 kb on - strandat 1404.979 kb on - strand, within HER17_RS06325at 1404.979 kb on - strand, within HER17_RS06325at 1405.017 kb on - strand, within HER17_RS06325at 1405.075 kb on - strand, within HER17_RS06325at 1405.262 kb on + strand, within HER17_RS06325at 1405.281 kb on + strand, within HER17_RS06325at 1405.281 kb on + strand, within HER17_RS06325at 1405.281 kb on + strand, within HER17_RS06325at 1405.281 kb on + strand, within HER17_RS06325at 1405.282 kb on - strand, within HER17_RS06325at 1405.282 kb on - strand, within HER17_RS06325at 1405.362 kb on - strand, within HER17_RS06325at 1405.366 kb on + strand, within HER17_RS06325at 1405.414 kb on + strand, within HER17_RS06325at 1405.415 kb on - strand, within HER17_RS06325at 1405.437 kb on + strand, within HER17_RS06325at 1405.457 kb on + strand, within HER17_RS06325at 1405.525 kb on - strand, within HER17_RS06325at 1405.525 kb on - strand, within HER17_RS06325at 1405.734 kb on - strand, within HER17_RS06325at 1405.837 kb on + strand, within HER17_RS06325

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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1,400,775 - HER17_RS06315 0.69 -0.3
1,400,933 + HER17_RS06315 0.74 +0.1
1,400,934 - HER17_RS06315 0.75 -0.1
1,400,976 + HER17_RS06315 0.76 -0.1
1,400,976 + HER17_RS06315 0.76 -0.8
1,400,997 + HER17_RS06315 0.77 -0.3
1,400,998 - HER17_RS06315 0.77 +2.0
1,401,033 - HER17_RS06315 0.78 -0.3
1,401,033 - HER17_RS06315 0.78 -0.9
1,401,107 + HER17_RS06315 0.80 -1.6
1,401,108 - HER17_RS06315 0.80 +0.1
1,401,133 + HER17_RS06315 0.81 +0.6
1,401,242 - HER17_RS06315 0.85 -0.5
1,401,242 - HER17_RS06315 0.85 -0.7
1,401,273 + HER17_RS06315 0.86 +0.1
1,401,273 + HER17_RS06315 0.86 -0.9
1,401,273 + HER17_RS06315 0.86 +0.6
1,401,273 + HER17_RS06315 0.86 -0.4
1,401,273 + HER17_RS06315 0.86 -0.4
1,401,273 + HER17_RS06315 0.86 +0.3
1,401,274 - HER17_RS06315 0.86 -1.0
1,401,333 + HER17_RS06315 0.87 +0.1
1,401,334 - HER17_RS06315 0.88 -0.5
1,401,419 - +0.1
1,401,433 + -0.4
1,401,454 + +0.0
1,401,454 + +0.2
1,401,455 - -0.5
1,401,455 - -0.6
1,401,457 + +1.0
1,401,638 + -0.4
1,401,639 - -0.8
1,401,641 + +0.2
1,401,641 + -0.3
1,401,642 - -1.0
1,401,782 + +1.0
1,401,782 + -0.4
1,401,840 + -0.1
1,401,840 + +1.6
1,401,841 - +0.6
1,401,841 - -1.0
1,401,965 + +0.3
1,401,977 + +0.1
1,401,978 - -0.0
1,402,149 + HER17_RS06320 0.14 +1.4
1,402,173 + HER17_RS06320 0.15 +0.6
1,402,173 + HER17_RS06320 0.15 -0.3
1,402,174 - HER17_RS06320 0.15 -0.2
1,402,174 - HER17_RS06320 0.15 +0.8
1,402,185 - HER17_RS06320 0.15 +1.1
1,402,186 + HER17_RS06320 0.15 -0.2
1,402,187 - HER17_RS06320 0.15 +0.7
1,402,187 - HER17_RS06320 0.15 +0.5
1,402,205 + HER17_RS06320 0.16 +0.5
1,402,205 + HER17_RS06320 0.16 -0.4
1,402,205 + HER17_RS06320 0.16 +1.0
1,402,206 - HER17_RS06320 0.16 -0.2
1,402,206 - HER17_RS06320 0.16 -0.1
1,402,206 - HER17_RS06320 0.16 -0.4
1,402,206 - HER17_RS06320 0.16 -0.4
1,402,206 - HER17_RS06320 0.16 +0.7
1,402,206 - HER17_RS06320 0.16 -0.4
1,402,576 - HER17_RS06320 0.28 -0.4
1,402,577 + HER17_RS06320 0.28 -0.8
1,402,577 + HER17_RS06320 0.28 +0.8
1,402,577 + HER17_RS06320 0.28 +0.4
1,402,577 + HER17_RS06320 0.28 +0.2
1,402,577 + HER17_RS06320 0.28 -0.9
1,402,577 + HER17_RS06320 0.28 +0.2
1,402,578 - HER17_RS06320 0.28 -0.7
1,402,578 - HER17_RS06320 0.28 +0.1
1,402,578 - HER17_RS06320 0.28 +0.2
1,402,578 - HER17_RS06320 0.28 +0.4
1,402,578 - HER17_RS06320 0.28 -0.1
1,402,614 - HER17_RS06320 0.29 -0.2
1,402,614 - HER17_RS06320 0.29 +0.4
1,402,614 - HER17_RS06320 0.29 +0.9
1,402,641 + HER17_RS06320 0.30 -0.1
1,402,641 + HER17_RS06320 0.30 +0.1
1,402,641 + HER17_RS06320 0.30 +1.1
1,402,641 + HER17_RS06320 0.30 -0.3
1,402,641 + HER17_RS06320 0.30 -0.1
1,402,642 - HER17_RS06320 0.30 +0.5
1,402,642 - HER17_RS06320 0.30 -1.6
1,402,642 - HER17_RS06320 0.30 +1.0
1,402,642 - HER17_RS06320 0.30 +0.7
1,402,642 - HER17_RS06320 0.30 -0.8
1,402,727 - HER17_RS06320 0.32 -0.0
1,402,806 + HER17_RS06320 0.35 +0.8
1,402,806 + HER17_RS06320 0.35 -1.1
1,402,807 - HER17_RS06320 0.35 -0.6
1,402,807 - HER17_RS06320 0.35 +0.3
1,402,869 - HER17_RS06320 0.37 -0.6
1,402,930 - HER17_RS06320 0.39 -0.8
1,402,930 - HER17_RS06320 0.39 +0.3
1,403,085 + HER17_RS06320 0.44 +0.5
1,403,175 + HER17_RS06320 0.47 +0.5
1,403,176 - HER17_RS06320 0.47 +0.3
1,403,177 + HER17_RS06320 0.47 -0.6
1,403,178 - HER17_RS06320 0.47 -0.5
1,403,178 - HER17_RS06320 0.47 +0.8
1,403,178 - HER17_RS06320 0.47 +0.3
1,403,192 - HER17_RS06320 0.47 +1.0
1,403,400 + HER17_RS06320 0.54 +0.0
1,403,457 + HER17_RS06320 0.56 +0.0
1,403,458 - HER17_RS06320 0.56 +2.0
1,403,458 - HER17_RS06320 0.56 +0.5
1,403,461 + HER17_RS06320 0.56 -0.8
1,403,461 + HER17_RS06320 0.56 +1.3
1,403,462 - HER17_RS06320 0.56 +0.7
1,403,462 - HER17_RS06320 0.56 -0.0
1,403,573 + HER17_RS06320 0.59 +0.1
1,403,656 - HER17_RS06320 0.62 -0.8
1,403,678 + HER17_RS06320 0.63 +0.1
1,403,678 + HER17_RS06320 0.63 -0.6
1,403,679 - HER17_RS06320 0.63 +0.5
1,403,679 - HER17_RS06320 0.63 +0.1
1,403,762 + HER17_RS06320 0.66 -0.3
1,403,763 - HER17_RS06320 0.66 -0.7
1,403,907 + HER17_RS06320 0.70 +0.2
1,403,907 + HER17_RS06320 0.70 +0.8
1,403,907 + HER17_RS06320 0.70 -0.2
1,403,907 + HER17_RS06320 0.70 +0.7
1,403,907 + HER17_RS06320 0.70 +0.7
1,403,907 + HER17_RS06320 0.70 +0.3
1,403,907 + HER17_RS06320 0.70 +0.9
1,403,907 + HER17_RS06320 0.70 -0.6
1,403,908 - HER17_RS06320 0.70 +0.5
1,403,908 - HER17_RS06320 0.70 +0.9
1,403,908 - HER17_RS06320 0.70 -0.2
1,403,908 - HER17_RS06320 0.70 -1.4
1,403,908 - HER17_RS06320 0.70 +0.2
1,403,910 + HER17_RS06320 0.70 +1.1
1,403,910 + HER17_RS06320 0.70 +0.6
1,403,910 + HER17_RS06320 0.70 +1.6
1,404,187 - HER17_RS06320 0.79 +0.0
1,404,287 - HER17_RS06320 0.82 -0.2
1,404,289 + HER17_RS06320 0.82 -1.1
1,404,393 + HER17_RS06320 0.86 -0.6
1,404,426 - HER17_RS06320 0.87 -0.3
1,404,514 + HER17_RS06320 0.90 -0.5
1,404,667 - -0.2
1,404,736 - +0.3
1,404,789 + +0.4
1,404,790 - +0.2
1,404,790 - -2.4
1,404,979 - HER17_RS06325 0.11 +0.3
1,404,979 - HER17_RS06325 0.11 -1.4
1,405,017 - HER17_RS06325 0.15 -0.5
1,405,075 - HER17_RS06325 0.19 +1.8
1,405,262 + HER17_RS06325 0.34 +0.3
1,405,281 + HER17_RS06325 0.36 +0.4
1,405,281 + HER17_RS06325 0.36 -0.2
1,405,281 + HER17_RS06325 0.36 -0.6
1,405,281 + HER17_RS06325 0.36 -0.1
1,405,282 - HER17_RS06325 0.36 -0.4
1,405,282 - HER17_RS06325 0.36 +0.0
1,405,362 - HER17_RS06325 0.42 -0.5
1,405,366 + HER17_RS06325 0.43 +0.5
1,405,414 + HER17_RS06325 0.47 -2.4
1,405,415 - HER17_RS06325 0.47 -1.4
1,405,437 + HER17_RS06325 0.49 -0.8
1,405,457 + HER17_RS06325 0.50 +0.1
1,405,525 - HER17_RS06325 0.56 -0.7
1,405,525 - HER17_RS06325 0.56 -1.7
1,405,734 - HER17_RS06325 0.73 -0.1
1,405,837 + HER17_RS06325 0.81 +0.4

Or see this region's nucleotide sequence