Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS04385

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS04380 and HER17_RS04385 are separated by 179 nucleotidesHER17_RS04385 and HER17_RS04390 are separated by 382 nucleotides HER17_RS04380: HER17_RS04380 - methionine ABC transporter ATP-binding protein MetN, at 997,215 to 998,246 _RS04380 HER17_RS04385: HER17_RS04385 - D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase, at 998,426 to 998,989 _RS04385 HER17_RS04390: HER17_RS04390 - 16S ribosomal RNA, at 999,372 to 1,000,917 _RS04390 Position (kb) 998 999Strain fitness (log2 ratio) -1 0 1 2at 997.444 kb on - strand, within HER17_RS04380at 997.444 kb on - strand, within HER17_RS04380at 997.655 kb on + strand, within HER17_RS04380at 997.655 kb on + strand, within HER17_RS04380at 997.655 kb on + strand, within HER17_RS04380at 997.656 kb on - strand, within HER17_RS04380at 997.656 kb on - strand, within HER17_RS04380at 997.659 kb on - strand, within HER17_RS04380at 997.659 kb on - strand, within HER17_RS04380at 997.701 kb on + strand, within HER17_RS04380at 997.734 kb on + strand, within HER17_RS04380at 997.734 kb on + strand, within HER17_RS04380at 997.734 kb on + strand, within HER17_RS04380at 997.735 kb on - strand, within HER17_RS04380at 997.735 kb on - strand, within HER17_RS04380at 997.735 kb on - strand, within HER17_RS04380at 997.735 kb on - strand, within HER17_RS04380at 997.735 kb on - strand, within HER17_RS04380at 997.735 kb on - strand, within HER17_RS04380at 997.735 kb on - strand, within HER17_RS04380at 997.837 kb on + strand, within HER17_RS04380at 997.851 kb on - strand, within HER17_RS04380at 998.024 kb on + strand, within HER17_RS04380at 998.056 kb on - strand, within HER17_RS04380at 998.056 kb on - strand, within HER17_RS04380at 998.089 kb on - strand, within HER17_RS04380at 998.089 kb on - strand, within HER17_RS04380at 998.117 kb on + strand, within HER17_RS04380at 998.118 kb on - strand, within HER17_RS04380at 998.118 kb on - strand, within HER17_RS04380at 998.223 kb on - strandat 998.226 kb on - strandat 998.246 kb on + strandat 998.246 kb on + strandat 998.247 kb on - strandat 998.277 kb on + strandat 998.392 kb on + strandat 998.404 kb on + strandat 998.489 kb on + strand, within HER17_RS04385at 998.490 kb on - strand, within HER17_RS04385at 998.490 kb on - strand, within HER17_RS04385at 998.518 kb on + strand, within HER17_RS04385at 998.629 kb on + strand, within HER17_RS04385at 998.629 kb on + strand, within HER17_RS04385at 998.693 kb on + strand, within HER17_RS04385at 998.806 kb on + strand, within HER17_RS04385at 998.806 kb on + strand, within HER17_RS04385at 998.806 kb on + strand, within HER17_RS04385at 998.806 kb on + strand, within HER17_RS04385at 998.819 kb on + strand, within HER17_RS04385at 998.819 kb on + strand, within HER17_RS04385at 998.819 kb on + strand, within HER17_RS04385at 998.819 kb on + strand, within HER17_RS04385at 998.822 kb on - strand, within HER17_RS04385at 998.871 kb on + strand, within HER17_RS04385at 998.893 kb on + strand, within HER17_RS04385at 998.987 kb on + strandat 999.065 kb on - strandat 999.067 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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997,444 - HER17_RS04380 0.22 -0.7
997,444 - HER17_RS04380 0.22 -1.3
997,655 + HER17_RS04380 0.43 +0.7
997,655 + HER17_RS04380 0.43 -0.1
997,655 + HER17_RS04380 0.43 -0.1
997,656 - HER17_RS04380 0.43 +0.5
997,656 - HER17_RS04380 0.43 -0.8
997,659 - HER17_RS04380 0.43 -0.5
997,659 - HER17_RS04380 0.43 +0.3
997,701 + HER17_RS04380 0.47 +0.6
997,734 + HER17_RS04380 0.50 +0.8
997,734 + HER17_RS04380 0.50 +0.7
997,734 + HER17_RS04380 0.50 +1.0
997,735 - HER17_RS04380 0.50 +0.6
997,735 - HER17_RS04380 0.50 +2.0
997,735 - HER17_RS04380 0.50 +0.6
997,735 - HER17_RS04380 0.50 +0.6
997,735 - HER17_RS04380 0.50 -0.9
997,735 - HER17_RS04380 0.50 +0.3
997,735 - HER17_RS04380 0.50 +0.0
997,837 + HER17_RS04380 0.60 -0.8
997,851 - HER17_RS04380 0.62 -0.5
998,024 + HER17_RS04380 0.78 -0.4
998,056 - HER17_RS04380 0.81 +1.2
998,056 - HER17_RS04380 0.81 -0.6
998,089 - HER17_RS04380 0.85 -0.0
998,089 - HER17_RS04380 0.85 -0.1
998,117 + HER17_RS04380 0.87 -0.8
998,118 - HER17_RS04380 0.88 +0.9
998,118 - HER17_RS04380 0.88 -0.0
998,223 - -1.4
998,226 - -0.2
998,246 + -0.2
998,246 + +0.2
998,247 - -1.0
998,277 + +0.4
998,392 + -0.1
998,404 + +0.0
998,489 + HER17_RS04385 0.11 -1.4
998,490 - HER17_RS04385 0.11 +1.0
998,490 - HER17_RS04385 0.11 +1.0
998,518 + HER17_RS04385 0.16 +2.0
998,629 + HER17_RS04385 0.36 +1.0
998,629 + HER17_RS04385 0.36 -1.0
998,693 + HER17_RS04385 0.47 -0.3
998,806 + HER17_RS04385 0.67 +0.7
998,806 + HER17_RS04385 0.67 -0.9
998,806 + HER17_RS04385 0.67 -0.6
998,806 + HER17_RS04385 0.67 -0.1
998,819 + HER17_RS04385 0.70 +1.3
998,819 + HER17_RS04385 0.70 +0.7
998,819 + HER17_RS04385 0.70 -0.6
998,819 + HER17_RS04385 0.70 +1.3
998,822 - HER17_RS04385 0.70 +0.3
998,871 + HER17_RS04385 0.79 +0.2
998,893 + HER17_RS04385 0.83 +0.2
998,987 + +2.4
999,065 - -0.1
999,067 - +0.7

Or see this region's nucleotide sequence