Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS00670 and HER17_RS00675 are separated by 236 nucleotides HER17_RS00675 and HER17_RS00680 overlap by 4 nucleotides HER17_RS00680 and HER17_RS00685 are separated by 111 nucleotides
HER17_RS00670: HER17_RS00670 - cell-envelope stress modulator CpxP, at 154,046 to 154,570
_RS00670
HER17_RS00675: HER17_RS00675 - type II toxin-antitoxin system HicA family toxin, at 154,807 to 155,082
_RS00675
HER17_RS00680: HER17_RS00680 - type II toxin-antitoxin system HicB family antitoxin, at 155,079 to 155,441
_RS00680
HER17_RS00685: HER17_RS00685 - IS4 family transposase, at 155,553 to 156,748
_RS00685
Position (kb) 155
156 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 154.084 kb on + strand at 154.084 kb on + strand at 154.084 kb on + strand at 154.084 kb on + strand at 154.084 kb on + strand at 154.085 kb on - strand at 154.085 kb on - strand at 154.085 kb on - strand at 154.085 kb on - strand at 154.085 kb on - strand at 154.085 kb on - strand at 154.089 kb on + strand at 154.147 kb on + strand, within HER17_RS00670 at 154.189 kb on + strand, within HER17_RS00670 at 154.189 kb on + strand, within HER17_RS00670 at 154.189 kb on + strand, within HER17_RS00670 at 154.190 kb on - strand, within HER17_RS00670 at 154.190 kb on - strand, within HER17_RS00670 at 154.190 kb on - strand, within HER17_RS00670 at 154.190 kb on - strand, within HER17_RS00670 at 154.190 kb on - strand, within HER17_RS00670 at 154.190 kb on - strand, within HER17_RS00670 at 154.190 kb on - strand, within HER17_RS00670 at 154.303 kb on + strand, within HER17_RS00670 at 154.303 kb on + strand, within HER17_RS00670 at 154.303 kb on + strand, within HER17_RS00670 at 154.303 kb on + strand, within HER17_RS00670 at 154.303 kb on + strand, within HER17_RS00670 at 154.304 kb on - strand, within HER17_RS00670 at 154.354 kb on - strand, within HER17_RS00670 at 154.418 kb on + strand, within HER17_RS00670 at 154.418 kb on + strand, within HER17_RS00670 at 154.418 kb on + strand, within HER17_RS00670 at 154.418 kb on + strand, within HER17_RS00670 at 154.418 kb on + strand, within HER17_RS00670 at 154.418 kb on + strand, within HER17_RS00670 at 154.418 kb on + strand, within HER17_RS00670 at 154.418 kb on + strand, within HER17_RS00670 at 154.419 kb on - strand, within HER17_RS00670 at 154.419 kb on - strand, within HER17_RS00670 at 154.421 kb on - strand, within HER17_RS00670 at 154.449 kb on + strand, within HER17_RS00670 at 154.449 kb on + strand, within HER17_RS00670 at 154.449 kb on + strand, within HER17_RS00670 at 154.449 kb on + strand, within HER17_RS00670 at 154.452 kb on + strand, within HER17_RS00670 at 154.452 kb on + strand, within HER17_RS00670 at 154.453 kb on - strand, within HER17_RS00670 at 154.453 kb on - strand, within HER17_RS00670 at 154.453 kb on - strand, within HER17_RS00670 at 154.465 kb on + strand, within HER17_RS00670 at 154.466 kb on - strand, within HER17_RS00670 at 154.498 kb on - strand, within HER17_RS00670 at 154.508 kb on - strand, within HER17_RS00670 at 154.571 kb on + strand at 154.582 kb on + strand at 154.582 kb on + strand at 154.582 kb on + strand at 154.582 kb on + strand at 154.583 kb on - strand at 154.583 kb on - strand at 154.583 kb on - strand at 154.585 kb on + strand at 154.585 kb on + strand at 154.585 kb on + strand at 154.589 kb on + strand at 154.589 kb on + strand at 154.590 kb on - strand at 154.590 kb on - strand at 154.596 kb on + strand at 154.597 kb on - strand at 154.597 kb on - strand at 154.599 kb on + strand at 154.600 kb on - strand at 154.606 kb on - strand at 154.622 kb on + strand at 154.622 kb on + strand at 154.623 kb on - strand at 154.629 kb on + strand at 154.629 kb on + strand at 154.630 kb on - strand at 154.630 kb on - strand at 154.632 kb on + strand at 154.632 kb on + strand at 154.633 kb on - strand at 154.633 kb on - strand at 154.633 kb on - strand at 154.636 kb on + strand at 154.636 kb on + strand at 154.636 kb on + strand at 154.636 kb on + strand at 154.637 kb on - strand at 154.661 kb on - strand at 154.724 kb on + strand at 154.724 kb on + strand at 154.724 kb on + strand at 154.725 kb on - strand at 154.725 kb on - strand at 154.725 kb on - strand at 154.725 kb on - strand at 154.725 kb on - strand at 154.830 kb on - strand at 154.890 kb on + strand, within HER17_RS00675 at 154.890 kb on + strand, within HER17_RS00675 at 154.891 kb on - strand, within HER17_RS00675 at 154.891 kb on - strand, within HER17_RS00675 at 154.902 kb on + strand, within HER17_RS00675 at 154.902 kb on + strand, within HER17_RS00675 at 154.938 kb on + strand, within HER17_RS00675 at 154.939 kb on - strand, within HER17_RS00675 at 154.939 kb on - strand, within HER17_RS00675 at 154.947 kb on + strand, within HER17_RS00675 at 155.064 kb on + strand at 155.065 kb on - strand at 155.065 kb on - strand at 155.066 kb on + strand at 155.066 kb on + strand at 155.073 kb on - strand at 155.073 kb on - strand at 155.296 kb on - strand, within HER17_RS00680
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 154,084 + +0.4 154,084 + +1.5 154,084 + -0.7 154,084 + -0.2 154,084 + +0.0 154,085 - +1.3 154,085 - +0.5 154,085 - -0.2 154,085 - -0.2 154,085 - -0.1 154,085 - -0.7 154,089 + -0.3 154,147 + HER17_RS00670 0.19 -0.6 154,189 + HER17_RS00670 0.27 +0.3 154,189 + HER17_RS00670 0.27 -0.9 154,189 + HER17_RS00670 0.27 -0.6 154,190 - HER17_RS00670 0.27 +0.8 154,190 - HER17_RS00670 0.27 +0.0 154,190 - HER17_RS00670 0.27 -0.5 154,190 - HER17_RS00670 0.27 +0.8 154,190 - HER17_RS00670 0.27 -0.6 154,190 - HER17_RS00670 0.27 +1.0 154,190 - HER17_RS00670 0.27 +0.4 154,303 + HER17_RS00670 0.49 +0.3 154,303 + HER17_RS00670 0.49 -0.7 154,303 + HER17_RS00670 0.49 +0.6 154,303 + HER17_RS00670 0.49 +0.4 154,303 + HER17_RS00670 0.49 -0.1 154,304 - HER17_RS00670 0.49 -0.0 154,354 - HER17_RS00670 0.59 +0.4 154,418 + HER17_RS00670 0.71 +0.3 154,418 + HER17_RS00670 0.71 -0.4 154,418 + HER17_RS00670 0.71 -0.4 154,418 + HER17_RS00670 0.71 -0.2 154,418 + HER17_RS00670 0.71 -0.1 154,418 + HER17_RS00670 0.71 +0.6 154,418 + HER17_RS00670 0.71 -1.1 154,418 + HER17_RS00670 0.71 +0.4 154,419 - HER17_RS00670 0.71 -1.0 154,419 - HER17_RS00670 0.71 -0.2 154,421 - HER17_RS00670 0.71 -2.1 154,449 + HER17_RS00670 0.77 +0.5 154,449 + HER17_RS00670 0.77 +0.4 154,449 + HER17_RS00670 0.77 -0.3 154,449 + HER17_RS00670 0.77 -0.8 154,452 + HER17_RS00670 0.77 -0.1 154,452 + HER17_RS00670 0.77 +0.8 154,453 - HER17_RS00670 0.78 -0.9 154,453 - HER17_RS00670 0.78 +0.6 154,453 - HER17_RS00670 0.78 -1.4 154,465 + HER17_RS00670 0.80 -0.4 154,466 - HER17_RS00670 0.80 -0.2 154,498 - HER17_RS00670 0.86 +0.2 154,508 - HER17_RS00670 0.88 -0.4 154,571 + +0.5 154,582 + -0.8 154,582 + -0.2 154,582 + -1.5 154,582 + -0.5 154,583 - +0.8 154,583 - +0.2 154,583 - +0.2 154,585 + +0.1 154,585 + -1.5 154,585 + -1.2 154,589 + -1.2 154,589 + +0.4 154,590 - -0.3 154,590 - +0.8 154,596 + +0.4 154,597 - +0.7 154,597 - +0.1 154,599 + -0.4 154,600 - -0.5 154,606 - -0.6 154,622 + +1.0 154,622 + +0.8 154,623 - -0.7 154,629 + -0.5 154,629 + +1.0 154,630 - +0.3 154,630 - +0.3 154,632 + -0.3 154,632 + +0.7 154,633 - +0.1 154,633 - -1.4 154,633 - -0.3 154,636 + +0.4 154,636 + +0.0 154,636 + -0.2 154,636 + +2.2 154,637 - +0.2 154,661 - -0.1 154,724 + +0.9 154,724 + +0.0 154,724 + +0.6 154,725 - -0.2 154,725 - +0.9 154,725 - +2.5 154,725 - -0.5 154,725 - +0.6 154,830 - -0.0 154,890 + HER17_RS00675 0.30 -0.0 154,890 + HER17_RS00675 0.30 +0.0 154,891 - HER17_RS00675 0.30 +0.4 154,891 - HER17_RS00675 0.30 +0.7 154,902 + HER17_RS00675 0.34 +1.7 154,902 + HER17_RS00675 0.34 +0.6 154,938 + HER17_RS00675 0.47 +1.6 154,939 - HER17_RS00675 0.48 +0.2 154,939 - HER17_RS00675 0.48 +0.4 154,947 + HER17_RS00675 0.51 -0.1 155,064 + -0.7 155,065 - +0.0 155,065 - +0.0 155,066 + -0.8 155,066 + -2.8 155,073 - -1.2 155,073 - +0.5 155,296 - HER17_RS00680 0.60 +0.4
Or see this region's nucleotide sequence