Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS00110

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS00100 and HER17_RS00105 are separated by 1 nucleotidesHER17_RS00105 and HER17_RS00110 overlap by 1 nucleotidesHER17_RS00110 and HER17_RS00115 overlap by 4 nucleotidesHER17_RS00115 and HER17_RS00120 are separated by 39 nucleotides HER17_RS00100: HER17_RS00100 - nucleoside hydrolase, at 21,351 to 22,304 _RS00100 HER17_RS00105: HER17_RS00105 - nucleoside hydrolase, at 22,306 to 23,295 _RS00105 HER17_RS00110: HER17_RS00110 - ABC transporter permease, at 23,295 to 24,272 _RS00110 HER17_RS00115: HER17_RS00115 - ABC transporter permease, at 24,269 to 25,177 _RS00115 HER17_RS00120: HER17_RS00120 - ABC transporter ATP-binding protein, at 25,217 to 27,022 _RS00120 Position (kb) 23 24 25Strain fitness (log2 ratio) -2 -1 0 1 2 3at 22.323 kb on + strandat 22.323 kb on + strandat 22.323 kb on + strandat 22.324 kb on - strandat 22.324 kb on - strandat 22.324 kb on - strandat 22.333 kb on - strandat 22.359 kb on - strandat 22.427 kb on + strand, within HER17_RS00105at 22.428 kb on - strand, within HER17_RS00105at 22.542 kb on + strand, within HER17_RS00105at 22.546 kb on + strand, within HER17_RS00105at 22.546 kb on + strand, within HER17_RS00105at 22.547 kb on - strand, within HER17_RS00105at 22.547 kb on - strand, within HER17_RS00105at 22.547 kb on - strand, within HER17_RS00105at 22.547 kb on - strand, within HER17_RS00105at 22.547 kb on - strand, within HER17_RS00105at 22.547 kb on - strand, within HER17_RS00105at 22.547 kb on - strand, within HER17_RS00105at 22.547 kb on - strand, within HER17_RS00105at 22.555 kb on - strand, within HER17_RS00105at 22.662 kb on + strand, within HER17_RS00105at 22.743 kb on + strand, within HER17_RS00105at 22.776 kb on + strand, within HER17_RS00105at 22.812 kb on + strand, within HER17_RS00105at 22.980 kb on + strand, within HER17_RS00105at 23.103 kb on - strand, within HER17_RS00105at 23.103 kb on - strand, within HER17_RS00105at 23.146 kb on + strand, within HER17_RS00105at 23.265 kb on + strandat 23.265 kb on + strandat 23.265 kb on + strandat 23.304 kb on + strandat 23.348 kb on + strandat 23.348 kb on + strandat 23.349 kb on - strandat 23.349 kb on - strandat 23.349 kb on - strandat 23.368 kb on + strandat 23.368 kb on + strandat 23.368 kb on + strandat 23.368 kb on + strandat 23.368 kb on + strandat 23.369 kb on - strandat 23.369 kb on - strandat 23.377 kb on - strandat 23.388 kb on - strandat 23.399 kb on + strand, within HER17_RS00110at 23.534 kb on + strand, within HER17_RS00110at 23.541 kb on - strand, within HER17_RS00110at 23.646 kb on + strand, within HER17_RS00110at 23.646 kb on + strand, within HER17_RS00110at 23.646 kb on + strand, within HER17_RS00110at 23.647 kb on - strand, within HER17_RS00110at 23.712 kb on - strand, within HER17_RS00110at 23.873 kb on + strand, within HER17_RS00110at 23.949 kb on + strand, within HER17_RS00110at 23.949 kb on + strand, within HER17_RS00110at 23.949 kb on + strand, within HER17_RS00110at 23.949 kb on + strand, within HER17_RS00110at 23.949 kb on + strand, within HER17_RS00110at 23.949 kb on + strand, within HER17_RS00110at 23.950 kb on - strand, within HER17_RS00110at 23.950 kb on - strand, within HER17_RS00110at 23.950 kb on - strand, within HER17_RS00110at 23.950 kb on - strand, within HER17_RS00110at 24.096 kb on + strand, within HER17_RS00110at 24.096 kb on + strand, within HER17_RS00110at 24.096 kb on + strand, within HER17_RS00110at 24.096 kb on + strand, within HER17_RS00110at 24.097 kb on - strand, within HER17_RS00110at 24.097 kb on - strand, within HER17_RS00110at 24.168 kb on + strand, within HER17_RS00110at 24.168 kb on + strand, within HER17_RS00110at 24.203 kb on + strandat 24.225 kb on + strandat 24.225 kb on + strandat 24.225 kb on + strandat 24.225 kb on + strandat 24.225 kb on + strandat 24.226 kb on - strandat 24.226 kb on - strandat 24.226 kb on - strandat 24.280 kb on + strandat 24.281 kb on - strandat 24.281 kb on - strandat 24.285 kb on + strandat 24.286 kb on - strandat 24.513 kb on - strand, within HER17_RS00115at 24.563 kb on + strand, within HER17_RS00115at 24.644 kb on - strand, within HER17_RS00115at 24.650 kb on + strand, within HER17_RS00115at 24.651 kb on - strand, within HER17_RS00115at 24.703 kb on + strand, within HER17_RS00115at 24.703 kb on + strand, within HER17_RS00115at 24.703 kb on + strand, within HER17_RS00115at 24.703 kb on + strand, within HER17_RS00115at 24.703 kb on + strand, within HER17_RS00115at 24.704 kb on - strand, within HER17_RS00115at 24.800 kb on + strand, within HER17_RS00115at 24.800 kb on + strand, within HER17_RS00115at 24.801 kb on - strand, within HER17_RS00115at 24.803 kb on + strand, within HER17_RS00115at 24.803 kb on + strand, within HER17_RS00115at 24.803 kb on + strand, within HER17_RS00115at 24.851 kb on + strand, within HER17_RS00115at 24.852 kb on - strand, within HER17_RS00115at 24.907 kb on + strand, within HER17_RS00115at 24.907 kb on + strand, within HER17_RS00115at 24.913 kb on - strand, within HER17_RS00115at 24.963 kb on - strand, within HER17_RS00115at 25.059 kb on - strand, within HER17_RS00115at 25.076 kb on + strand, within HER17_RS00115at 25.175 kb on + strandat 25.200 kb on + strandat 25.201 kb on - strandat 25.231 kb on + strandat 25.231 kb on + strandat 25.232 kb on - strandat 25.232 kb on - strandat 25.232 kb on - strandat 25.232 kb on - strandat 25.232 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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22,323 + -0.0
22,323 + -0.5
22,323 + +2.1
22,324 - -0.3
22,324 - -0.5
22,324 - +1.0
22,333 - -0.4
22,359 - +2.2
22,427 + HER17_RS00105 0.12 -0.3
22,428 - HER17_RS00105 0.12 -0.3
22,542 + HER17_RS00105 0.24 -0.1
22,546 + HER17_RS00105 0.24 -0.3
22,546 + HER17_RS00105 0.24 -0.3
22,547 - HER17_RS00105 0.24 -0.5
22,547 - HER17_RS00105 0.24 +0.3
22,547 - HER17_RS00105 0.24 +3.1
22,547 - HER17_RS00105 0.24 -0.5
22,547 - HER17_RS00105 0.24 +0.9
22,547 - HER17_RS00105 0.24 -0.6
22,547 - HER17_RS00105 0.24 -0.5
22,547 - HER17_RS00105 0.24 -0.2
22,555 - HER17_RS00105 0.25 -2.0
22,662 + HER17_RS00105 0.36 +0.4
22,743 + HER17_RS00105 0.44 +0.6
22,776 + HER17_RS00105 0.47 -0.4
22,812 + HER17_RS00105 0.51 -1.2
22,980 + HER17_RS00105 0.68 -0.2
23,103 - HER17_RS00105 0.81 +0.1
23,103 - HER17_RS00105 0.81 -0.4
23,146 + HER17_RS00105 0.85 +0.0
23,265 + -0.4
23,265 + +0.1
23,265 + +1.1
23,304 + +0.0
23,348 + -0.4
23,348 + +0.7
23,349 - +0.1
23,349 - +0.9
23,349 - -0.2
23,368 + +0.2
23,368 + -0.3
23,368 + +0.7
23,368 + +0.2
23,368 + -0.6
23,369 - -0.4
23,369 - -0.3
23,377 - +0.3
23,388 - -0.0
23,399 + HER17_RS00110 0.11 +0.1
23,534 + HER17_RS00110 0.24 -0.1
23,541 - HER17_RS00110 0.25 -0.3
23,646 + HER17_RS00110 0.36 -1.3
23,646 + HER17_RS00110 0.36 +0.8
23,646 + HER17_RS00110 0.36 -0.6
23,647 - HER17_RS00110 0.36 -0.4
23,712 - HER17_RS00110 0.43 +0.1
23,873 + HER17_RS00110 0.59 -0.2
23,949 + HER17_RS00110 0.67 +0.8
23,949 + HER17_RS00110 0.67 -0.2
23,949 + HER17_RS00110 0.67 +0.2
23,949 + HER17_RS00110 0.67 +0.0
23,949 + HER17_RS00110 0.67 +0.8
23,949 + HER17_RS00110 0.67 -0.0
23,950 - HER17_RS00110 0.67 +0.8
23,950 - HER17_RS00110 0.67 -0.9
23,950 - HER17_RS00110 0.67 -0.8
23,950 - HER17_RS00110 0.67 -0.7
24,096 + HER17_RS00110 0.82 -0.0
24,096 + HER17_RS00110 0.82 -0.6
24,096 + HER17_RS00110 0.82 -0.4
24,096 + HER17_RS00110 0.82 +0.5
24,097 - HER17_RS00110 0.82 -0.1
24,097 - HER17_RS00110 0.82 +0.3
24,168 + HER17_RS00110 0.89 -0.1
24,168 + HER17_RS00110 0.89 -1.3
24,203 + -0.2
24,225 + +0.5
24,225 + -0.3
24,225 + +0.5
24,225 + +0.8
24,225 + -0.3
24,226 - -0.2
24,226 - +0.3
24,226 - -0.4
24,280 + -2.4
24,281 - +0.3
24,281 - -0.1
24,285 + -0.0
24,286 - -1.1
24,513 - HER17_RS00115 0.27 -0.1
24,563 + HER17_RS00115 0.32 +0.2
24,644 - HER17_RS00115 0.41 +0.8
24,650 + HER17_RS00115 0.42 +0.3
24,651 - HER17_RS00115 0.42 -0.3
24,703 + HER17_RS00115 0.48 -2.0
24,703 + HER17_RS00115 0.48 -0.1
24,703 + HER17_RS00115 0.48 +0.7
24,703 + HER17_RS00115 0.48 +1.3
24,703 + HER17_RS00115 0.48 -0.7
24,704 - HER17_RS00115 0.48 -0.1
24,800 + HER17_RS00115 0.58 +0.7
24,800 + HER17_RS00115 0.58 -1.7
24,801 - HER17_RS00115 0.59 -1.0
24,803 + HER17_RS00115 0.59 -0.0
24,803 + HER17_RS00115 0.59 +0.3
24,803 + HER17_RS00115 0.59 +0.3
24,851 + HER17_RS00115 0.64 -0.2
24,852 - HER17_RS00115 0.64 -0.2
24,907 + HER17_RS00115 0.70 +0.0
24,907 + HER17_RS00115 0.70 +0.3
24,913 - HER17_RS00115 0.71 +0.7
24,963 - HER17_RS00115 0.76 +0.4
25,059 - HER17_RS00115 0.87 +0.8
25,076 + HER17_RS00115 0.89 +0.8
25,175 + +0.3
25,200 + +0.1
25,201 - +0.5
25,231 + +0.1
25,231 + -0.3
25,232 - +0.3
25,232 - -0.2
25,232 - -1.2
25,232 - +0.2
25,232 - -0.0

Or see this region's nucleotide sequence