Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS22025

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
4,885,778	+		HER17_RS21820	0.34	-1.0
4,885,840	+		HER17_RS21820	0.41	-1.7
4,886,151	+		HER17_RS21820	0.76	-0.1
4,886,216	+		HER17_RS21820	0.83	-0.2
4,886,309	+				+0.1
4,886,366	+				+0.6
4,886,367	-				+0.3
4,886,367	-				-0.7
4,886,383	+				+0.3
4,886,387	+				-1.2
4,886,387	+				-1.0
4,886,388	-				-1.1
4,886,388	-				-0.5
4,886,410	-				+0.4
4,886,430	+				-1.7
4,886,431	-				+0.3
4,886,431	-				+0.5
4,886,435	-				+1.7
4,886,450	-				+0.0
4,886,450	-				+0.3
4,886,450	-				+0.8
4,886,454	+				+0.0
4,886,455	-				-0.6
4,886,489	+				-0.3
4,886,579	+				-0.7
4,886,579	+				-0.0
4,886,580	-				+0.9
4,886,580	-				+0.3
4,886,588	+				+0.3
4,886,588	+				-0.4
4,886,588	+				-2.2
4,886,588	+				-0.3
4,886,588	+				+0.9
4,886,589	-				+1.1
4,886,589	-				+0.1
4,886,589	-				+2.2
4,886,589	-				+0.9
4,886,589	-				-0.8
4,886,643	+				-0.5
4,886,643	+				-0.1
4,886,644	-				-0.2
4,886,646	+				+0.7
4,886,653	+				-1.0
4,886,665	+				-0.0
4,886,670	+				-0.7
4,886,681	-				+0.4
4,886,712	+				+0.5
4,886,826	-		HER17_RS22025	0.12	-0.9
4,886,826	-		HER17_RS22025	0.12	-0.8
4,886,882	+		HER17_RS22025	0.19	+1.2
4,886,882	+		HER17_RS22025	0.19	-0.2
4,886,883	-		HER17_RS22025	0.19	-0.4
4,886,905	+		HER17_RS22025	0.22	+0.7
4,886,906	-		HER17_RS22025	0.22	-0.9
4,886,939	-		HER17_RS22025	0.26	-1.1
4,886,939	-		HER17_RS22025	0.26	-0.3
4,886,939	-		HER17_RS22025	0.26	-0.2
4,886,939	-		HER17_RS22025	0.26	-0.1
4,886,939	-		HER17_RS22025	0.26	-0.0
4,886,939	-		HER17_RS22025	0.26	-0.2
4,886,939	-		HER17_RS22025	0.26	-0.2
4,886,952	+		HER17_RS22025	0.28	-0.5
4,886,952	+		HER17_RS22025	0.28	+0.0
4,886,953	-		HER17_RS22025	0.28	-0.0
4,886,953	-		HER17_RS22025	0.28	+0.4
4,886,970	-		HER17_RS22025	0.30	-0.9
4,886,987	+		HER17_RS22025	0.32	+0.7
4,886,987	+		HER17_RS22025	0.32	-0.3
4,886,988	-		HER17_RS22025	0.32	-0.5
4,886,990	+		HER17_RS22025	0.32	+0.1
4,886,990	+		HER17_RS22025	0.32	-0.7
4,886,991	-		HER17_RS22025	0.33	+0.9
4,887,017	+		HER17_RS22025	0.36	+1.1
4,887,017	+		HER17_RS22025	0.36	-0.9
4,887,029	-		HER17_RS22025	0.37	-0.5
4,887,032	+		HER17_RS22025	0.38	+0.1
4,887,045	-		HER17_RS22025	0.39	+0.8
4,887,046	+		HER17_RS22025	0.39	-0.3
4,887,047	-		HER17_RS22025	0.40	+0.3
4,887,061	+		HER17_RS22025	0.41	-0.2
4,887,062	-		HER17_RS22025	0.42	-1.9
4,887,062	-		HER17_RS22025	0.42	+0.4
4,887,075	-		HER17_RS22025	0.43	+0.5
4,887,084	-		HER17_RS22025	0.44	-0.4
4,887,084	-		HER17_RS22025	0.44	+0.1
4,887,084	-		HER17_RS22025	0.44	+0.2
4,887,111	+		HER17_RS22025	0.48	-0.6
4,887,154	-		HER17_RS22025	0.53	+0.3
4,887,154	-		HER17_RS22025	0.53	-0.6
4,887,181	+		HER17_RS22025	0.57	-0.5
4,887,182	-		HER17_RS22025	0.57	+0.2
4,887,183	+		HER17_RS22025	0.57	+0.2
4,887,183	+		HER17_RS22025	0.57	-0.4
4,887,183	+		HER17_RS22025	0.57	+0.8
4,887,184	-		HER17_RS22025	0.57	-0.8
4,887,184	-		HER17_RS22025	0.57	+0.1
4,887,184	-		HER17_RS22025	0.57	+0.2
4,887,184	-		HER17_RS22025	0.57	+0.6
4,887,184	-		HER17_RS22025	0.57	-0.3
4,887,193	+		HER17_RS22025	0.58	+0.0
4,887,232	+		HER17_RS22025	0.63	+0.2
4,887,233	-		HER17_RS22025	0.63	+0.2
4,887,246	-		HER17_RS22025	0.65	-0.1
4,887,251	+		HER17_RS22025	0.65	-0.2
4,887,252	-		HER17_RS22025	0.66	-1.0
4,887,287	-		HER17_RS22025	0.70	-0.3
4,887,294	+		HER17_RS22025	0.71	-0.6
4,887,294	+		HER17_RS22025	0.71	+0.0
4,887,294	+		HER17_RS22025	0.71	+0.9
4,887,294	+		HER17_RS22025	0.71	-0.9
4,887,294	+		HER17_RS22025	0.71	-0.1
4,887,294	+		HER17_RS22025	0.71	-1.2
4,887,295	-		HER17_RS22025	0.71	-0.3
4,887,295	-		HER17_RS22025	0.71	+0.2
4,887,321	-		HER17_RS22025	0.74	+0.4
4,887,360	+		HER17_RS22025	0.79	-0.8
4,887,360	+		HER17_RS22025	0.79	+0.3
4,887,360	+		HER17_RS22025	0.79	-0.5
4,887,360	+		HER17_RS22025	0.79	+0.3
4,887,360	+		HER17_RS22025	0.79	-0.4
4,887,360	+		HER17_RS22025	0.79	-0.5
4,887,360	+		HER17_RS22025	0.79	-0.2
4,887,361	-		HER17_RS22025	0.79	-1.0
4,887,361	-		HER17_RS22025	0.79	-1.4
4,887,361	-		HER17_RS22025	0.79	-0.3
4,887,362	+		HER17_RS22025	0.79	+0.2
4,887,362	+		HER17_RS22025	0.79	+1.0
4,887,362	+		HER17_RS22025	0.79	+0.6
4,887,362	+		HER17_RS22025	0.79	-0.1
4,887,362	+		HER17_RS22025	0.79	-0.6
4,887,363	-		HER17_RS22025	0.80	-0.3
4,887,363	-		HER17_RS22025	0.80	+0.2
4,887,363	-		HER17_RS22025	0.80	+0.2
4,887,364	+		HER17_RS22025	0.80	+0.7
4,887,365	-		HER17_RS22025	0.80	-0.4
4,887,365	-		HER17_RS22025	0.80	+0.3
4,887,365	-		HER17_RS22025	0.80	-1.2
4,887,377	+		HER17_RS22025	0.81	+0.1
4,887,378	-		HER17_RS22025	0.82	+0.1
4,887,406	+		HER17_RS22025	0.85	-0.6
4,887,406	+		HER17_RS22025	0.85	-0.2
4,887,407	-		HER17_RS22025	0.85	-0.1
4,887,407	-		HER17_RS22025	0.85	-0.9
4,887,411	+		HER17_RS22025	0.86	-0.1
4,887,411	+		HER17_RS22025	0.86	-0.1
4,887,412	-		HER17_RS22025	0.86	+0.9
4,887,427	+		HER17_RS22025	0.88	+0.0
4,887,427	+		HER17_RS22025	0.88	-0.3
4,887,454	+				+0.5
4,887,541	-				-0.8
4,887,568	+				-0.3
4,887,568	+				-0.2
4,887,568	+				+0.9
4,887,569	-				-0.4
4,887,569	-				-0.1
4,887,572	+				-0.5
4,887,572	+				+0.6
4,887,572	+				-0.3
4,887,573	-				+1.6
4,887,607	-				+0.0
4,887,607	-				-0.2
4,887,607	-				-0.2
4,887,615	+				+0.4
4,887,629	-				-0.3
4,887,631	+				+0.2
4,887,631	+				-1.1
4,887,632	-				+0.5
4,887,635	+				+0.0
4,887,635	+				-0.2
4,887,636	-				-1.0
4,887,639	+				+0.5
4,887,639	+				-0.9
4,887,639	+				-1.4
4,887,640	-				-0.4
4,887,640	-				+0.4
4,887,758	+				+0.0
4,887,759	-				+1.0
4,887,985	+		HER17_RS21825	0.22	+0.3
4,888,149	-		HER17_RS21825	0.34	-0.7
4,888,273	+		HER17_RS21825	0.43	-0.7
4,888,274	-		HER17_RS21825	0.43	-0.4
4,888,283	+		HER17_RS21825	0.44	-0.9
4,888,283	+		HER17_RS21825	0.44	+0.3
4,888,286	+		HER17_RS21825	0.44	+0.0
4,888,286	+		HER17_RS21825	0.44	-1.3
4,888,372	+		HER17_RS21825	0.50	-0.9
4,888,409	+		HER17_RS21825	0.53	+1.2