Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS19805

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS19800 and HER17_RS19805 are separated by 84 nucleotidesHER17_RS19805 and HER17_RS19810 overlap by 1 nucleotidesHER17_RS19810 and HER17_RS19815 are separated by 107 nucleotides HER17_RS19800: HER17_RS19800 - DNA topoisomerase IV subunit B, at 4,446,203 to 4,448,098 _RS19800 HER17_RS19805: HER17_RS19805 - esterase YqiA, at 4,448,183 to 4,448,764 _RS19805 HER17_RS19810: HER17_RS19810 - 3',5'-cyclic-AMP phosphodiesterase, at 4,448,764 to 4,449,591 _RS19810 HER17_RS19815: HER17_RS19815 - DUF1249 family protein, at 4,449,699 to 4,450,130 _RS19815 Position (kb) 4448 4449Strain fitness (log2 ratio) -2 -1 0 1 2at 4448.173 kb on - strandat 4448.290 kb on - strand, within HER17_RS19805at 4448.290 kb on - strand, within HER17_RS19805at 4448.415 kb on - strand, within HER17_RS19805at 4448.415 kb on - strand, within HER17_RS19805at 4448.415 kb on - strand, within HER17_RS19805at 4448.415 kb on - strand, within HER17_RS19805at 4448.421 kb on + strand, within HER17_RS19805at 4448.421 kb on + strand, within HER17_RS19805at 4448.421 kb on + strand, within HER17_RS19805at 4448.421 kb on + strand, within HER17_RS19805at 4448.421 kb on + strand, within HER17_RS19805at 4448.421 kb on + strand, within HER17_RS19805at 4448.421 kb on + strand, within HER17_RS19805at 4448.422 kb on - strand, within HER17_RS19805at 4448.422 kb on - strand, within HER17_RS19805at 4448.422 kb on - strand, within HER17_RS19805at 4448.422 kb on - strand, within HER17_RS19805at 4448.422 kb on - strand, within HER17_RS19805at 4448.422 kb on - strand, within HER17_RS19805at 4448.436 kb on + strand, within HER17_RS19805at 4448.448 kb on + strand, within HER17_RS19805at 4448.449 kb on - strand, within HER17_RS19805at 4448.518 kb on + strand, within HER17_RS19805at 4448.544 kb on + strand, within HER17_RS19805at 4448.545 kb on - strand, within HER17_RS19805at 4448.545 kb on - strand, within HER17_RS19805at 4448.545 kb on - strand, within HER17_RS19805at 4448.545 kb on - strand, within HER17_RS19805at 4448.545 kb on - strand, within HER17_RS19805at 4448.547 kb on + strand, within HER17_RS19805at 4448.748 kb on + strandat 4448.765 kb on + strandat 4448.766 kb on - strandat 4448.766 kb on - strandat 4448.766 kb on - strandat 4448.768 kb on + strandat 4448.816 kb on + strandat 4448.849 kb on - strand, within HER17_RS19810at 4448.849 kb on - strand, within HER17_RS19810at 4448.896 kb on - strand, within HER17_RS19810at 4448.917 kb on + strand, within HER17_RS19810at 4448.918 kb on - strand, within HER17_RS19810at 4448.918 kb on - strand, within HER17_RS19810at 4448.982 kb on + strand, within HER17_RS19810at 4448.982 kb on + strand, within HER17_RS19810at 4448.982 kb on + strand, within HER17_RS19810at 4449.034 kb on + strand, within HER17_RS19810at 4449.034 kb on + strand, within HER17_RS19810at 4449.034 kb on + strand, within HER17_RS19810at 4449.040 kb on - strand, within HER17_RS19810at 4449.117 kb on + strand, within HER17_RS19810at 4449.118 kb on - strand, within HER17_RS19810at 4449.220 kb on - strand, within HER17_RS19810at 4449.265 kb on - strand, within HER17_RS19810at 4449.265 kb on - strand, within HER17_RS19810at 4449.326 kb on - strand, within HER17_RS19810at 4449.467 kb on + strand, within HER17_RS19810at 4449.471 kb on + strand, within HER17_RS19810at 4449.472 kb on - strand, within HER17_RS19810at 4449.472 kb on - strand, within HER17_RS19810at 4449.472 kb on - strand, within HER17_RS19810at 4449.476 kb on + strand, within HER17_RS19810at 4449.477 kb on - strand, within HER17_RS19810at 4449.525 kb on + strandat 4449.526 kb on - strandat 4449.526 kb on - strandat 4449.526 kb on - strandat 4449.526 kb on - strandat 4449.526 kb on - strandat 4449.526 kb on - strandat 4449.533 kb on - strandat 4449.539 kb on - strandat 4449.607 kb on - strandat 4449.610 kb on + strandat 4449.610 kb on + strandat 4449.611 kb on - strandat 4449.622 kb on + strandat 4449.700 kb on + strandat 4449.701 kb on - strandat 4449.701 kb on - strandat 4449.736 kb on + strandat 4449.753 kb on + strand, within HER17_RS19815

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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4,448,173 - -0.2
4,448,290 - HER17_RS19805 0.18 +1.2
4,448,290 - HER17_RS19805 0.18 -0.1
4,448,415 - HER17_RS19805 0.40 +1.3
4,448,415 - HER17_RS19805 0.40 +0.5
4,448,415 - HER17_RS19805 0.40 +0.4
4,448,415 - HER17_RS19805 0.40 +1.4
4,448,421 + HER17_RS19805 0.41 +0.4
4,448,421 + HER17_RS19805 0.41 +1.7
4,448,421 + HER17_RS19805 0.41 -0.6
4,448,421 + HER17_RS19805 0.41 +0.5
4,448,421 + HER17_RS19805 0.41 -0.3
4,448,421 + HER17_RS19805 0.41 -0.0
4,448,421 + HER17_RS19805 0.41 +0.4
4,448,422 - HER17_RS19805 0.41 +0.4
4,448,422 - HER17_RS19805 0.41 +0.1
4,448,422 - HER17_RS19805 0.41 -0.4
4,448,422 - HER17_RS19805 0.41 +0.6
4,448,422 - HER17_RS19805 0.41 -0.4
4,448,422 - HER17_RS19805 0.41 +0.5
4,448,436 + HER17_RS19805 0.43 -0.2
4,448,448 + HER17_RS19805 0.46 +1.3
4,448,449 - HER17_RS19805 0.46 +0.3
4,448,518 + HER17_RS19805 0.58 +0.5
4,448,544 + HER17_RS19805 0.62 -0.4
4,448,545 - HER17_RS19805 0.62 -1.5
4,448,545 - HER17_RS19805 0.62 +2.4
4,448,545 - HER17_RS19805 0.62 +0.5
4,448,545 - HER17_RS19805 0.62 +0.3
4,448,545 - HER17_RS19805 0.62 +0.2
4,448,547 + HER17_RS19805 0.63 -0.1
4,448,748 + -1.6
4,448,765 + -0.1
4,448,766 - -0.7
4,448,766 - +0.0
4,448,766 - +0.6
4,448,768 + +0.3
4,448,816 + +0.9
4,448,849 - HER17_RS19810 0.10 -0.4
4,448,849 - HER17_RS19810 0.10 -0.7
4,448,896 - HER17_RS19810 0.16 +0.1
4,448,917 + HER17_RS19810 0.18 -0.3
4,448,918 - HER17_RS19810 0.19 +0.6
4,448,918 - HER17_RS19810 0.19 +0.1
4,448,982 + HER17_RS19810 0.26 -0.3
4,448,982 + HER17_RS19810 0.26 +0.1
4,448,982 + HER17_RS19810 0.26 -1.5
4,449,034 + HER17_RS19810 0.33 -0.1
4,449,034 + HER17_RS19810 0.33 -0.3
4,449,034 + HER17_RS19810 0.33 +0.2
4,449,040 - HER17_RS19810 0.33 +0.2
4,449,117 + HER17_RS19810 0.43 -0.6
4,449,118 - HER17_RS19810 0.43 -1.5
4,449,220 - HER17_RS19810 0.55 -0.3
4,449,265 - HER17_RS19810 0.61 -2.1
4,449,265 - HER17_RS19810 0.61 +0.5
4,449,326 - HER17_RS19810 0.68 -1.7
4,449,467 + HER17_RS19810 0.85 -1.9
4,449,471 + HER17_RS19810 0.85 -0.8
4,449,472 - HER17_RS19810 0.86 +0.3
4,449,472 - HER17_RS19810 0.86 +0.6
4,449,472 - HER17_RS19810 0.86 +0.2
4,449,476 + HER17_RS19810 0.86 -0.3
4,449,477 - HER17_RS19810 0.86 -0.3
4,449,525 + +0.1
4,449,526 - -0.5
4,449,526 - +0.3
4,449,526 - +0.6
4,449,526 - -2.0
4,449,526 - -0.2
4,449,526 - -0.1
4,449,533 - -1.0
4,449,539 - +0.4
4,449,607 - +0.3
4,449,610 + -0.7
4,449,610 + -0.2
4,449,611 - -0.3
4,449,622 + +0.4
4,449,700 + -0.8
4,449,701 - +0.1
4,449,701 - +0.2
4,449,736 + -0.1
4,449,753 + HER17_RS19815 0.12 +0.9

Or see this region's nucleotide sequence