Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS17785

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
4,012,913	-		HER17_RS17780	0.39	+0.1
4,012,968	+		HER17_RS17780	0.43	+0.7
4,012,969	-		HER17_RS17780	0.43	-1.2
4,012,969	-		HER17_RS17780	0.43	-0.9
4,012,977	+		HER17_RS17780	0.43	-1.8
4,012,977	+		HER17_RS17780	0.43	+0.1
4,012,977	+		HER17_RS17780	0.43	-0.2
4,012,977	+		HER17_RS17780	0.43	-1.6
4,012,978	-		HER17_RS17780	0.43	-0.6
4,013,166	+		HER17_RS17780	0.56	-0.1
4,013,247	+		HER17_RS17780	0.62	+0.5
4,013,248	-		HER17_RS17780	0.62	-0.1
4,013,313	+		HER17_RS17780	0.66	+0.7
4,013,313	+		HER17_RS17780	0.66	+0.4
4,013,314	-		HER17_RS17780	0.66	-0.1
4,013,314	-		HER17_RS17780	0.66	+0.4
4,013,314	-		HER17_RS17780	0.66	+0.3
4,013,314	-		HER17_RS17780	0.66	-0.1
4,013,322	+		HER17_RS17780	0.67	-0.9
4,013,468	+		HER17_RS17780	0.76	+0.1
4,013,468	+		HER17_RS17780	0.76	+0.3
4,013,469	-		HER17_RS17780	0.76	-1.0
4,013,474	+		HER17_RS17780	0.77	-0.2
4,013,475	-		HER17_RS17780	0.77	+0.1
4,013,524	+		HER17_RS17780	0.80	-1.5
4,013,524	+		HER17_RS17780	0.80	-0.4
4,013,524	+		HER17_RS17780	0.80	-0.2
4,013,525	-		HER17_RS17780	0.80	-1.6
4,013,525	-		HER17_RS17780	0.80	-2.6
4,013,525	-		HER17_RS17780	0.80	-0.1
4,013,549	-		HER17_RS17780	0.82	-0.2
4,013,587	+		HER17_RS17780	0.84	-0.4
4,013,588	-		HER17_RS17780	0.85	+0.2
4,013,588	-		HER17_RS17780	0.85	-2.0
4,013,588	-		HER17_RS17780	0.85	-0.1
4,013,588	-		HER17_RS17780	0.85	-0.7
4,013,805	-				-0.7
4,013,815	+				+0.8
4,013,823	+				+0.2
4,013,823	+				-0.6
4,013,823	+				+0.2
4,013,824	-				-0.5
4,013,824	-				+1.2
4,013,871	+				+0.5
4,013,871	+				+0.3
4,013,872	-				+0.5
4,013,887	+				+0.6
4,013,887	+				-0.9
4,013,888	-				+0.3
4,013,942	-				+1.6
4,013,942	-				-1.1
4,013,942	-				+0.3
4,013,983	+		HER17_RS17785	0.11	-0.2
4,013,989	+		HER17_RS17785	0.12	+0.9
4,013,989	+		HER17_RS17785	0.12	-0.4
4,013,989	+		HER17_RS17785	0.12	-0.0
4,013,990	-		HER17_RS17785	0.12	-1.8
4,014,030	+		HER17_RS17785	0.16	-0.6
4,014,127	+		HER17_RS17785	0.27	-0.7
4,014,128	-		HER17_RS17785	0.27	+0.1
4,014,128	-		HER17_RS17785	0.27	-0.1
4,014,128	-		HER17_RS17785	0.27	+0.2
4,014,128	-		HER17_RS17785	0.27	-2.0
4,014,128	-		HER17_RS17785	0.27	+0.9
4,014,189	-		HER17_RS17785	0.33	+0.5
4,014,266	+		HER17_RS17785	0.42	-0.3
4,014,312	+		HER17_RS17785	0.47	+0.2
4,014,330	-		HER17_RS17785	0.49	+0.9
4,014,330	-		HER17_RS17785	0.49	-0.3
4,014,330	-		HER17_RS17785	0.49	+0.3
4,014,333	-		HER17_RS17785	0.49	+0.6
4,014,333	-		HER17_RS17785	0.49	-1.1
4,014,346	+		HER17_RS17785	0.50	+1.0
4,014,346	+		HER17_RS17785	0.50	+0.3
4,014,346	+		HER17_RS17785	0.50	-0.3
4,014,347	-		HER17_RS17785	0.51	-0.3
4,014,347	-		HER17_RS17785	0.51	+0.6
4,014,404	+		HER17_RS17785	0.57	+0.4
4,014,404	+		HER17_RS17785	0.57	-0.0
4,014,405	-		HER17_RS17785	0.57	+0.3
4,014,456	+		HER17_RS17785	0.62	+0.2
4,014,456	+		HER17_RS17785	0.62	-1.0
4,014,457	-		HER17_RS17785	0.62	-0.8
4,014,457	-		HER17_RS17785	0.62	+0.1
4,014,457	-		HER17_RS17785	0.62	+0.5
4,014,560	+		HER17_RS17785	0.74	-0.7
4,014,717	+				+0.2
4,014,718	-				+0.1
4,014,771	+				-0.7
4,014,783	-				+0.5
4,014,806	+				-0.3
4,014,807	-				-0.1
4,014,807	-				+0.4
4,014,817	-				+0.3
4,014,817	-				-1.3
4,014,840	-				-0.5
4,014,840	-				-0.1
4,014,861	+				-0.4
4,014,861	+				+0.2
4,014,867	+				+1.3
4,014,867	+				+0.0
4,014,867	+				+0.7
4,014,867	+				+0.2
4,014,867	+				+0.7
4,014,867	+				-0.1
4,014,868	-				+0.9
4,014,868	-				+1.0
4,014,868	-				+0.3
4,014,868	-				+0.4
4,014,868	-				+2.1
4,014,879	+				+0.2
4,014,879	+				+0.3
4,014,879	+				-0.9
4,014,880	-				+0.2
4,014,880	-				+0.8
4,014,880	-				-0.8
4,014,880	-				-0.4
4,014,880	-				+0.2
4,014,885	+				+0.0
4,014,886	-				+0.1
4,014,941	+				-0.2
4,015,034	-				-0.6
4,015,037	-				-0.5
4,015,068	+				-0.1
4,015,069	-				+0.2
4,015,069	-				-0.3
4,015,100	-				+0.5
4,015,159	+				-1.3
4,015,160	-				-0.1
4,015,209	+				-0.1
4,015,210	-				+0.2
4,015,270	-				-0.1
4,015,285	-				+0.4
4,015,311	+		HER17_RS17790	0.12	+0.6
4,015,311	+		HER17_RS17790	0.12	+0.2
4,015,311	+		HER17_RS17790	0.12	-1.2
4,015,311	+		HER17_RS17790	0.12	+0.2
4,015,311	+		HER17_RS17790	0.12	-0.1
4,015,311	+		HER17_RS17790	0.12	-0.3
4,015,354	+		HER17_RS17790	0.16	-0.2
4,015,355	-		HER17_RS17790	0.16	-0.4
4,015,391	+		HER17_RS17790	0.20	-0.1
4,015,419	+		HER17_RS17790	0.22	+0.7
4,015,454	+		HER17_RS17790	0.26	+0.7
4,015,455	-		HER17_RS17790	0.26	+0.7
4,015,455	-		HER17_RS17790	0.26	-0.8
4,015,455	-		HER17_RS17790	0.26	-0.2
4,015,455	-		HER17_RS17790	0.26	-0.1
4,015,470	+		HER17_RS17790	0.27	+0.0
4,015,509	+		HER17_RS17790	0.31	-2.1
4,015,551	-		HER17_RS17790	0.35	-0.7
4,015,574	+		HER17_RS17790	0.37	-1.2
4,015,574	+		HER17_RS17790	0.37	+0.4
4,015,578	-		HER17_RS17790	0.37	+0.5
4,015,586	+		HER17_RS17790	0.38	-0.4
4,015,586	+		HER17_RS17790	0.38	-0.8
4,015,586	+		HER17_RS17790	0.38	-1.9
4,015,587	-		HER17_RS17790	0.38	-0.2
4,015,587	-		HER17_RS17790	0.38	+0.3
4,015,667	+		HER17_RS17790	0.46	+0.2
4,015,729	-		HER17_RS17790	0.51	+0.1
4,015,768	+		HER17_RS17790	0.55	+0.2