Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS08275

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
1,821,883	-		HER17_RS08265	0.79	+0.2
1,821,901	+		HER17_RS08265	0.81	+0.4
1,821,904	+		HER17_RS08265	0.81	+0.4
1,821,904	+		HER17_RS08265	0.81	-0.3
1,821,905	-		HER17_RS08265	0.81	+0.2
1,821,928	+		HER17_RS08265	0.83	-1.7
1,821,928	+		HER17_RS08265	0.83	+0.5
1,822,030	+				+0.8
1,822,030	+				+0.4
1,822,031	-				+0.5
1,822,031	-				-0.1
1,822,031	-				-0.3
1,822,031	-				+0.1
1,822,031	-				-0.4
1,822,031	-				-0.3
1,822,031	-				-1.3
1,822,031	-				+0.7
1,822,034	+				+0.2
1,822,035	-				-0.0
1,822,035	-				-0.4
1,822,035	-				+0.0
1,822,035	-				+0.0
1,822,168	+				+0.2
1,822,168	+				+0.5
1,822,168	+				+1.1
1,822,168	+				+0.3
1,822,168	+				-0.4
1,822,169	-				+0.5
1,822,169	-				-1.0
1,822,169	-				+0.0
1,822,169	-				+0.6
1,822,169	-				+0.2
1,822,254	+		HER17_RS08270	0.12	+0.2
1,822,254	+		HER17_RS08270	0.12	-1.3
1,822,325	+		HER17_RS08270	0.22	-0.7
1,822,326	-		HER17_RS08270	0.22	+0.1
1,822,386	+		HER17_RS08270	0.31	+0.3
1,822,411	+		HER17_RS08270	0.34	-0.6
1,822,431	+		HER17_RS08270	0.37	+1.4
1,822,483	+		HER17_RS08270	0.44	+0.3
1,822,588	+		HER17_RS08270	0.59	+0.6
1,822,649	+		HER17_RS08270	0.67	+0.3
1,822,791	+		HER17_RS08270	0.87	+0.5
1,822,792	-		HER17_RS08270	0.87	+0.9
1,822,792	-		HER17_RS08270	0.87	-0.2
1,822,792	-		HER17_RS08270	0.87	+0.6
1,822,795	+		HER17_RS08270	0.87	-0.5
1,822,802	+		HER17_RS08270	0.88	-1.5
1,822,802	+		HER17_RS08270	0.88	+0.1
1,822,802	+		HER17_RS08270	0.88	+0.1
1,822,802	+		HER17_RS08270	0.88	-0.0
1,822,802	+		HER17_RS08270	0.88	+0.3
1,822,803	-		HER17_RS08270	0.88	+0.1
1,822,887	+				-0.5
1,822,887	+				+0.5
1,822,887	+				-0.4
1,822,887	+				+0.1
1,822,887	+				-0.0
1,822,887	+				-0.7
1,822,887	+				-0.1
1,822,887	+				+0.6
1,822,888	-				-0.3
1,822,888	-				-2.2
1,822,888	-				+0.1
1,822,888	-				+0.1
1,822,888	-				-0.7
1,822,888	-				+0.2
1,822,945	+				-0.6
1,822,946	-				+0.4
1,822,984	+		HER17_RS08275	0.10	+1.0
1,822,984	+		HER17_RS08275	0.10	+0.5
1,822,984	+		HER17_RS08275	0.10	+0.9
1,822,984	+		HER17_RS08275	0.10	+0.8
1,822,985	-		HER17_RS08275	0.11	+0.4
1,822,985	-		HER17_RS08275	0.11	+0.4
1,822,985	-		HER17_RS08275	0.11	+1.9
1,822,988	+		HER17_RS08275	0.11	+0.3
1,822,988	+		HER17_RS08275	0.11	+0.7
1,822,989	-		HER17_RS08275	0.11	-1.0
1,822,989	-		HER17_RS08275	0.11	+0.0
1,823,044	+		HER17_RS08275	0.17	+0.5
1,823,044	+		HER17_RS08275	0.17	+0.1
1,823,044	+		HER17_RS08275	0.17	-0.6
1,823,044	+		HER17_RS08275	0.17	-1.9
1,823,045	-		HER17_RS08275	0.17	+0.2
1,823,045	-		HER17_RS08275	0.17	+1.6
1,823,045	-		HER17_RS08275	0.17	+0.1
1,823,045	-		HER17_RS08275	0.17	+0.4
1,823,396	-		HER17_RS08275	0.52	+0.5
1,823,399	+		HER17_RS08275	0.52	+0.3
1,823,399	+		HER17_RS08275	0.52	-0.5
1,823,399	+		HER17_RS08275	0.52	+0.2
1,823,399	+		HER17_RS08275	0.52	+0.2
1,823,400	-		HER17_RS08275	0.52	-0.4
1,823,404	+		HER17_RS08275	0.53	+0.2
1,823,438	+		HER17_RS08275	0.56	-0.4
1,823,438	+		HER17_RS08275	0.56	+0.5
1,823,438	+		HER17_RS08275	0.56	-0.9
1,823,439	-		HER17_RS08275	0.56	+0.5
1,823,513	-		HER17_RS08275	0.64	+0.5
1,823,587	+		HER17_RS08275	0.71	+1.0
1,823,649	+		HER17_RS08275	0.77	+0.3
1,823,680	-		HER17_RS08275	0.81	-0.4
1,823,764	+		HER17_RS08275	0.89	-1.0
1,823,764	+		HER17_RS08275	0.89	+0.2
1,823,765	-		HER17_RS08275	0.89	+0.9
1,823,774	+				+0.5
1,823,774	+				+0.5
1,823,775	-				+0.0
1,823,775	-				+0.4
1,823,837	+				+0.0
1,823,837	+				+0.1
1,823,873	-				-0.3
1,823,873	-				-0.5
1,823,873	-				-0.3
1,823,880	+				+0.4
1,823,899	+				+0.3
1,823,900	-				+0.7
1,823,941	+				+1.2
1,823,949	+				+1.6
1,823,949	+				+0.2
1,824,024	+				-0.1
1,824,024	+				+0.4
1,824,024	+				-0.1
1,824,025	-				+0.2
1,824,238	-		HER17_RS08280	0.21	-0.9
1,824,238	-		HER17_RS08280	0.21	+0.7
1,824,246	+		HER17_RS08280	0.22	-0.0
1,824,247	-		HER17_RS08280	0.22	+0.7
1,824,247	-		HER17_RS08280	0.22	-0.1
1,824,259	+		HER17_RS08280	0.23	-0.3
1,824,260	-		HER17_RS08280	0.23	+0.6
1,824,260	-		HER17_RS08280	0.23	+0.0
1,824,260	-		HER17_RS08280	0.23	-0.1
1,824,260	-		HER17_RS08280	0.23	-0.3
1,824,265	-		HER17_RS08280	0.23	+0.1
1,824,374	+		HER17_RS08280	0.29	+0.4
1,824,374	+		HER17_RS08280	0.29	+0.0
1,824,374	+		HER17_RS08280	0.29	+0.2
1,824,374	+		HER17_RS08280	0.29	+0.6
1,824,375	-		HER17_RS08280	0.29	+0.5
1,824,375	-		HER17_RS08280	0.29	+0.1
1,824,430	-		HER17_RS08280	0.33	-0.1
1,824,433	+		HER17_RS08280	0.33	+0.3
1,824,434	-		HER17_RS08280	0.33	-1.3
1,824,434	-		HER17_RS08280	0.33	-0.1
1,824,455	+		HER17_RS08280	0.34	+0.2
1,824,455	+		HER17_RS08280	0.34	+0.5
1,824,455	+		HER17_RS08280	0.34	+0.3
1,824,455	+		HER17_RS08280	0.34	+0.6
1,824,455	+		HER17_RS08280	0.34	+1.3
1,824,456	-		HER17_RS08280	0.34	-0.0
1,824,501	+		HER17_RS08280	0.37	-1.2
1,824,501	+		HER17_RS08280	0.37	+0.0
1,824,502	-		HER17_RS08280	0.37	+0.9
1,824,519	+		HER17_RS08280	0.38	+0.9
1,824,520	-		HER17_RS08280	0.38	-1.0
1,824,520	-		HER17_RS08280	0.38	+0.4
1,824,720	+		HER17_RS08280	0.49	-0.3
1,824,721	-		HER17_RS08280	0.49	+0.1
1,824,744	-		HER17_RS08280	0.51	-0.3
1,824,802	+		HER17_RS08280	0.54	+0.7
1,824,802	+		HER17_RS08280	0.54	+0.3
1,824,802	+		HER17_RS08280	0.54	+1.2
1,824,802	+		HER17_RS08280	0.54	+0.1
1,824,803	-		HER17_RS08280	0.54	+0.6
1,824,803	-		HER17_RS08280	0.54	+0.1
1,824,803	-		HER17_RS08280	0.54	+0.7
1,824,803	-		HER17_RS08280	0.54	-0.3
1,824,803	-		HER17_RS08280	0.54	+0.3
1,824,803	-		HER17_RS08280	0.54	-0.2
1,824,834	+		HER17_RS08280	0.56	+0.1
1,824,834	+		HER17_RS08280	0.56	+1.0
1,824,835	-		HER17_RS08280	0.56	+1.0
1,824,835	-		HER17_RS08280	0.56	+0.4
1,824,835	-		HER17_RS08280	0.56	+0.8
1,824,854	+		HER17_RS08280	0.57	+0.8
1,824,854	+		HER17_RS08280	0.57	+0.6
1,824,854	+		HER17_RS08280	0.57	-0.4
1,824,855	-		HER17_RS08280	0.57	+0.2
1,824,855	-		HER17_RS08280	0.57	+0.3