Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS04240 and HER17_RS04245 are separated by 12 nucleotides HER17_RS04245 and HER17_RS04250 are separated by 309 nucleotides
HER17_RS04240: HER17_RS04240 - assimilatory sulfite reductase (NADPH) hemoprotein subunit, at 969,671 to 971,404
_RS04240
HER17_RS04245: HER17_RS04245 - phosphoadenylyl-sulfate reductase, at 971,417 to 972,151
_RS04245
HER17_RS04250: HER17_RS04250 - ABC transporter substrate-binding protein, at 972,461 to 974,023
_RS04250
Position (kb) 971
972
973 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 970.514 kb on + strand, within HER17_RS04240 at 970.514 kb on + strand, within HER17_RS04240 at 970.515 kb on - strand, within HER17_RS04240 at 970.532 kb on - strand, within HER17_RS04240 at 970.595 kb on - strand, within HER17_RS04240 at 970.750 kb on + strand, within HER17_RS04240 at 970.751 kb on - strand, within HER17_RS04240 at 970.751 kb on - strand, within HER17_RS04240 at 970.906 kb on + strand, within HER17_RS04240 at 970.906 kb on + strand, within HER17_RS04240 at 970.907 kb on - strand, within HER17_RS04240 at 970.975 kb on + strand, within HER17_RS04240 at 970.975 kb on + strand, within HER17_RS04240 at 971.104 kb on + strand, within HER17_RS04240 at 971.105 kb on - strand, within HER17_RS04240 at 971.192 kb on + strand, within HER17_RS04240 at 971.192 kb on + strand, within HER17_RS04240 at 971.194 kb on + strand, within HER17_RS04240 at 971.195 kb on - strand, within HER17_RS04240 at 971.195 kb on - strand, within HER17_RS04240 at 971.195 kb on - strand, within HER17_RS04240 at 971.195 kb on - strand, within HER17_RS04240 at 971.239 kb on + strand at 971.239 kb on + strand at 971.239 kb on + strand at 971.239 kb on + strand at 971.239 kb on + strand at 971.240 kb on - strand at 971.243 kb on + strand at 971.243 kb on + strand at 971.362 kb on + strand at 971.362 kb on + strand at 971.363 kb on - strand at 971.363 kb on - strand at 971.365 kb on + strand at 971.365 kb on + strand at 971.429 kb on - strand at 971.488 kb on - strand at 971.488 kb on - strand at 971.558 kb on + strand, within HER17_RS04245 at 971.630 kb on - strand, within HER17_RS04245 at 971.630 kb on - strand, within HER17_RS04245 at 971.638 kb on + strand, within HER17_RS04245 at 971.639 kb on - strand, within HER17_RS04245 at 971.639 kb on - strand, within HER17_RS04245 at 971.684 kb on - strand, within HER17_RS04245 at 971.684 kb on - strand, within HER17_RS04245 at 971.684 kb on - strand, within HER17_RS04245 at 971.707 kb on - strand, within HER17_RS04245 at 971.807 kb on + strand, within HER17_RS04245 at 971.821 kb on + strand, within HER17_RS04245 at 971.857 kb on - strand, within HER17_RS04245 at 971.917 kb on - strand, within HER17_RS04245 at 971.917 kb on - strand, within HER17_RS04245 at 971.987 kb on + strand, within HER17_RS04245 at 971.987 kb on + strand, within HER17_RS04245 at 971.988 kb on - strand, within HER17_RS04245 at 971.994 kb on - strand, within HER17_RS04245 at 971.994 kb on - strand, within HER17_RS04245 at 972.017 kb on + strand, within HER17_RS04245 at 972.017 kb on + strand, within HER17_RS04245 at 972.041 kb on + strand, within HER17_RS04245 at 972.216 kb on - strand at 972.218 kb on - strand at 972.218 kb on - strand at 972.218 kb on - strand at 972.218 kb on - strand at 972.218 kb on - strand at 972.241 kb on + strand at 972.280 kb on + strand at 972.300 kb on + strand at 972.301 kb on - strand at 972.301 kb on - strand at 972.341 kb on + strand at 972.389 kb on - strand at 972.389 kb on - strand at 972.413 kb on - strand at 972.478 kb on + strand at 972.555 kb on + strand at 972.611 kb on - strand at 972.724 kb on + strand, within HER17_RS04250 at 972.725 kb on - strand, within HER17_RS04250 at 972.854 kb on + strand, within HER17_RS04250 at 972.854 kb on + strand, within HER17_RS04250 at 972.855 kb on - strand, within HER17_RS04250 at 972.855 kb on - strand, within HER17_RS04250 at 972.855 kb on - strand, within HER17_RS04250 at 972.869 kb on - strand, within HER17_RS04250 at 972.962 kb on + strand, within HER17_RS04250 at 973.052 kb on + strand, within HER17_RS04250 at 973.053 kb on - strand, within HER17_RS04250 at 973.053 kb on - strand, within HER17_RS04250 at 973.055 kb on - strand, within HER17_RS04250 at 973.055 kb on - strand, within HER17_RS04250 at 973.055 kb on - strand, within HER17_RS04250 at 973.110 kb on - strand, within HER17_RS04250
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 970,514 + HER17_RS04240 0.49 -0.6 970,514 + HER17_RS04240 0.49 -0.6 970,515 - HER17_RS04240 0.49 -0.7 970,532 - HER17_RS04240 0.50 -0.3 970,595 - HER17_RS04240 0.53 -1.7 970,750 + HER17_RS04240 0.62 -2.0 970,751 - HER17_RS04240 0.62 -1.4 970,751 - HER17_RS04240 0.62 -1.1 970,906 + HER17_RS04240 0.71 -1.2 970,906 + HER17_RS04240 0.71 -1.9 970,907 - HER17_RS04240 0.71 -1.4 970,975 + HER17_RS04240 0.75 -1.4 970,975 + HER17_RS04240 0.75 -2.2 971,104 + HER17_RS04240 0.83 -0.3 971,105 - HER17_RS04240 0.83 -1.9 971,192 + HER17_RS04240 0.88 -2.3 971,192 + HER17_RS04240 0.88 -2.2 971,194 + HER17_RS04240 0.88 -1.2 971,195 - HER17_RS04240 0.88 -2.6 971,195 - HER17_RS04240 0.88 -3.1 971,195 - HER17_RS04240 0.88 -1.5 971,195 - HER17_RS04240 0.88 -2.0 971,239 + -1.9 971,239 + -1.4 971,239 + -1.6 971,239 + -1.6 971,239 + -1.4 971,240 - -2.1 971,243 + -2.7 971,243 + -1.5 971,362 + -0.8 971,362 + -1.9 971,363 - -2.0 971,363 - -2.5 971,365 + -0.9 971,365 + -0.2 971,429 - -1.8 971,488 - -0.9 971,488 - -1.8 971,558 + HER17_RS04245 0.19 -2.2 971,630 - HER17_RS04245 0.29 -1.1 971,630 - HER17_RS04245 0.29 -2.7 971,638 + HER17_RS04245 0.30 -1.3 971,639 - HER17_RS04245 0.30 -1.9 971,639 - HER17_RS04245 0.30 -2.1 971,684 - HER17_RS04245 0.36 -1.1 971,684 - HER17_RS04245 0.36 -1.0 971,684 - HER17_RS04245 0.36 -0.4 971,707 - HER17_RS04245 0.39 -1.7 971,807 + HER17_RS04245 0.53 -0.9 971,821 + HER17_RS04245 0.55 -0.5 971,857 - HER17_RS04245 0.60 -2.1 971,917 - HER17_RS04245 0.68 -2.7 971,917 - HER17_RS04245 0.68 -2.7 971,987 + HER17_RS04245 0.78 -2.5 971,987 + HER17_RS04245 0.78 -2.6 971,988 - HER17_RS04245 0.78 -2.0 971,994 - HER17_RS04245 0.79 -1.1 971,994 - HER17_RS04245 0.79 -1.7 972,017 + HER17_RS04245 0.82 -1.5 972,017 + HER17_RS04245 0.82 -1.2 972,041 + HER17_RS04245 0.85 -2.3 972,216 - -0.5 972,218 - -0.8 972,218 - -0.0 972,218 - -0.0 972,218 - +0.8 972,218 - -0.2 972,241 + +0.4 972,280 + -0.2 972,300 + -0.1 972,301 - -0.1 972,301 - -0.8 972,341 + +0.2 972,389 - +1.0 972,389 - +0.1 972,413 - -0.1 972,478 + +1.2 972,555 + +1.6 972,611 - +0.4 972,724 + HER17_RS04250 0.17 -0.4 972,725 - HER17_RS04250 0.17 -0.1 972,854 + HER17_RS04250 0.25 +1.1 972,854 + HER17_RS04250 0.25 -1.1 972,855 - HER17_RS04250 0.25 +0.6 972,855 - HER17_RS04250 0.25 +0.3 972,855 - HER17_RS04250 0.25 -0.4 972,869 - HER17_RS04250 0.26 +0.2 972,962 + HER17_RS04250 0.32 -0.0 973,052 + HER17_RS04250 0.38 -0.0 973,053 - HER17_RS04250 0.38 -0.0 973,053 - HER17_RS04250 0.38 -0.1 973,055 - HER17_RS04250 0.38 -0.0 973,055 - HER17_RS04250 0.38 +0.6 973,055 - HER17_RS04250 0.38 +0.1 973,110 - HER17_RS04250 0.42 +0.1
Or see this region's nucleotide sequence