Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS04115 and HER17_RS04120 are separated by 387 nucleotides HER17_RS04120 and HER17_RS04125 are separated by 226 nucleotides
HER17_RS04115: HER17_RS04115 - GTP diphosphokinase, at 935,337 to 937,571
_RS04115
HER17_RS04120: HER17_RS04120 - nucleoside triphosphate pyrophosphohydrolase, at 937,959 to 938,771
_RS04120
HER17_RS04125: HER17_RS04125 - CTP synthase (glutamine hydrolyzing), at 938,998 to 940,635
_RS04125
Position (kb) 937
938
939 Strain fitness (log2 ratio) -2
-1
0
1
2 at 937.103 kb on + strand, within HER17_RS04115 at 937.103 kb on + strand, within HER17_RS04115 at 937.104 kb on - strand, within HER17_RS04115 at 937.142 kb on - strand, within HER17_RS04115 at 937.318 kb on - strand, within HER17_RS04115 at 937.383 kb on - strand at 937.413 kb on - strand at 937.413 kb on - strand at 937.413 kb on - strand at 937.418 kb on - strand at 937.418 kb on - strand at 937.470 kb on - strand at 937.485 kb on + strand at 937.486 kb on - strand at 937.486 kb on - strand at 937.486 kb on - strand at 937.569 kb on + strand at 937.569 kb on + strand at 937.570 kb on - strand at 937.644 kb on - strand at 937.903 kb on - strand at 937.955 kb on + strand at 937.956 kb on - strand at 937.959 kb on - strand at 937.967 kb on - strand at 938.082 kb on + strand, within HER17_RS04120 at 938.083 kb on - strand, within HER17_RS04120 at 938.084 kb on + strand, within HER17_RS04120 at 938.084 kb on + strand, within HER17_RS04120 at 938.084 kb on + strand, within HER17_RS04120 at 938.084 kb on + strand, within HER17_RS04120 at 938.084 kb on + strand, within HER17_RS04120 at 938.085 kb on - strand, within HER17_RS04120 at 938.085 kb on - strand, within HER17_RS04120 at 938.085 kb on - strand, within HER17_RS04120 at 938.085 kb on - strand, within HER17_RS04120 at 938.100 kb on + strand, within HER17_RS04120 at 938.100 kb on + strand, within HER17_RS04120 at 938.100 kb on + strand, within HER17_RS04120 at 938.100 kb on + strand, within HER17_RS04120 at 938.101 kb on - strand, within HER17_RS04120 at 938.101 kb on - strand, within HER17_RS04120 at 938.101 kb on - strand, within HER17_RS04120 at 938.234 kb on + strand, within HER17_RS04120 at 938.235 kb on - strand, within HER17_RS04120 at 938.487 kb on + strand, within HER17_RS04120
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 937,103 + HER17_RS04115 0.79 -1.2 937,103 + HER17_RS04115 0.79 -1.6 937,104 - HER17_RS04115 0.79 -0.1 937,142 - HER17_RS04115 0.81 -0.5 937,318 - HER17_RS04115 0.89 -1.0 937,383 - -0.8 937,413 - -0.1 937,413 - +0.4 937,413 - +0.3 937,418 - +0.1 937,418 - -1.5 937,470 - -0.4 937,485 + -0.4 937,486 - +1.8 937,486 - +0.8 937,486 - -0.0 937,569 + -0.1 937,569 + +0.6 937,570 - -0.3 937,644 - -0.5 937,903 - -0.4 937,955 + -0.8 937,956 - +1.2 937,959 - -0.1 937,967 - -0.6 938,082 + HER17_RS04120 0.15 -0.6 938,083 - HER17_RS04120 0.15 -1.1 938,084 + HER17_RS04120 0.15 -0.1 938,084 + HER17_RS04120 0.15 +0.9 938,084 + HER17_RS04120 0.15 +0.4 938,084 + HER17_RS04120 0.15 -0.5 938,084 + HER17_RS04120 0.15 -0.2 938,085 - HER17_RS04120 0.15 +0.7 938,085 - HER17_RS04120 0.15 -0.7 938,085 - HER17_RS04120 0.15 -0.3 938,085 - HER17_RS04120 0.15 -0.3 938,100 + HER17_RS04120 0.17 -0.5 938,100 + HER17_RS04120 0.17 -0.3 938,100 + HER17_RS04120 0.17 -0.5 938,100 + HER17_RS04120 0.17 +0.2 938,101 - HER17_RS04120 0.17 +0.0 938,101 - HER17_RS04120 0.17 -0.0 938,101 - HER17_RS04120 0.17 -0.0 938,234 + HER17_RS04120 0.34 -2.2 938,235 - HER17_RS04120 0.34 +0.6 938,487 + HER17_RS04120 0.65 -1.0
Or see this region's nucleotide sequence