Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS00835

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS00830 and HER17_RS00835 are separated by 570 nucleotidesHER17_RS00835 and HER17_RS00840 are separated by 119 nucleotidesHER17_RS00840 and HER17_RS00845 are separated by 134 nucleotides HER17_RS00830: HER17_RS00830 - aquaporin family protein, at 194,132 to 194,971 _RS00830 HER17_RS00835: HER17_RS00835 - septal ring assembly protein ZapB, at 195,542 to 195,781 _RS00835 HER17_RS00840: HER17_RS00840 - ribonuclease E activity regulator RraA, at 195,901 to 196,386 _RS00840 HER17_RS00845: HER17_RS00845 - 1,4-dihydroxy-2-naphthoate polyprenyltransferase, at 196,521 to 197,438 _RS00845 Position (kb) 195 196Strain fitness (log2 ratio) -3 -2 -1 0 1at 194.605 kb on + strand, within HER17_RS00830at 194.605 kb on + strand, within HER17_RS00830at 194.605 kb on + strand, within HER17_RS00830at 194.605 kb on + strand, within HER17_RS00830at 194.606 kb on - strand, within HER17_RS00830at 194.606 kb on - strand, within HER17_RS00830at 194.606 kb on - strand, within HER17_RS00830at 194.653 kb on - strand, within HER17_RS00830at 194.700 kb on + strand, within HER17_RS00830at 194.700 kb on + strand, within HER17_RS00830at 194.701 kb on - strand, within HER17_RS00830at 194.701 kb on - strand, within HER17_RS00830at 194.701 kb on - strand, within HER17_RS00830at 194.749 kb on + strand, within HER17_RS00830at 194.749 kb on + strand, within HER17_RS00830at 194.749 kb on + strand, within HER17_RS00830at 194.797 kb on - strand, within HER17_RS00830at 194.797 kb on - strand, within HER17_RS00830at 194.834 kb on + strand, within HER17_RS00830at 194.834 kb on + strand, within HER17_RS00830at 194.834 kb on + strand, within HER17_RS00830at 194.834 kb on + strand, within HER17_RS00830at 194.834 kb on + strand, within HER17_RS00830at 194.834 kb on + strand, within HER17_RS00830at 194.835 kb on - strand, within HER17_RS00830at 194.835 kb on - strand, within HER17_RS00830at 194.835 kb on - strand, within HER17_RS00830at 194.945 kb on + strandat 194.946 kb on - strandat 194.972 kb on - strandat 194.994 kb on + strandat 194.994 kb on + strandat 194.994 kb on + strandat 194.994 kb on + strandat 194.994 kb on + strandat 194.995 kb on - strandat 194.995 kb on - strandat 194.995 kb on - strandat 194.995 kb on - strandat 195.004 kb on + strandat 195.005 kb on - strandat 195.005 kb on - strandat 195.005 kb on - strandat 195.005 kb on - strandat 195.010 kb on + strandat 195.010 kb on + strandat 195.010 kb on + strandat 195.010 kb on + strandat 195.041 kb on - strandat 195.050 kb on + strandat 195.050 kb on + strandat 195.177 kb on + strandat 195.177 kb on + strandat 195.178 kb on - strandat 195.180 kb on + strandat 195.181 kb on - strandat 195.210 kb on - strandat 195.210 kb on - strandat 195.216 kb on - strandat 195.292 kb on + strandat 195.292 kb on + strandat 195.293 kb on - strandat 195.319 kb on + strandat 195.320 kb on - strandat 195.325 kb on + strandat 195.325 kb on + strandat 195.325 kb on + strandat 195.325 kb on + strandat 195.326 kb on - strandat 195.330 kb on - strandat 195.370 kb on - strandat 195.370 kb on - strandat 195.370 kb on - strandat 195.392 kb on + strandat 195.392 kb on + strandat 195.392 kb on + strandat 195.392 kb on + strandat 195.393 kb on - strandat 195.393 kb on - strandat 195.393 kb on - strandat 195.393 kb on - strandat 195.403 kb on + strandat 195.439 kb on + strandat 195.440 kb on - strandat 195.596 kb on - strand, within HER17_RS00835at 195.779 kb on + strandat 195.830 kb on + strandat 195.831 kb on - strandat 195.831 kb on - strandat 195.877 kb on - strandat 195.899 kb on + strandat 195.900 kb on - strandat 195.900 kb on - strandat 195.900 kb on - strandat 195.902 kb on + strandat 195.933 kb on + strandat 195.933 kb on + strandat 195.933 kb on + strandat 195.933 kb on + strandat 195.934 kb on - strandat 195.943 kb on - strandat 195.953 kb on + strand, within HER17_RS00840at 195.953 kb on + strand, within HER17_RS00840at 195.953 kb on + strand, within HER17_RS00840at 196.300 kb on - strand, within HER17_RS00840at 196.314 kb on + strand, within HER17_RS00840at 196.315 kb on - strand, within HER17_RS00840at 196.356 kb on + strandat 196.357 kb on - strandat 196.374 kb on + strandat 196.380 kb on - strandat 196.380 kb on - strandat 196.386 kb on + strandat 196.392 kb on + strandat 196.421 kb on + strandat 196.421 kb on + strandat 196.421 kb on + strandat 196.421 kb on + strandat 196.421 kb on + strandat 196.422 kb on - strandat 196.422 kb on - strandat 196.422 kb on - strandat 196.422 kb on - strandat 196.422 kb on - strandat 196.422 kb on - strandat 196.422 kb on - strandat 196.423 kb on + strandat 196.423 kb on + strandat 196.424 kb on - strandat 196.424 kb on - strandat 196.480 kb on + strandat 196.481 kb on - strandat 196.481 kb on - strandat 196.522 kb on + strandat 196.530 kb on + strandat 196.531 kb on - strandat 196.630 kb on + strand, within HER17_RS00845at 196.631 kb on - strand, within HER17_RS00845at 196.631 kb on - strand, within HER17_RS00845at 196.631 kb on - strand, within HER17_RS00845at 196.696 kb on + strand, within HER17_RS00845at 196.697 kb on - strand, within HER17_RS00845at 196.697 kb on - strand, within HER17_RS00845at 196.697 kb on - strand, within HER17_RS00845at 196.697 kb on - strand, within HER17_RS00845at 196.753 kb on + strand, within HER17_RS00845

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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194,605 + HER17_RS00830 0.56 -0.9
194,605 + HER17_RS00830 0.56 +0.2
194,605 + HER17_RS00830 0.56 -1.1
194,605 + HER17_RS00830 0.56 -1.1
194,606 - HER17_RS00830 0.56 -0.6
194,606 - HER17_RS00830 0.56 -2.3
194,606 - HER17_RS00830 0.56 -1.5
194,653 - HER17_RS00830 0.62 -1.6
194,700 + HER17_RS00830 0.68 -1.4
194,700 + HER17_RS00830 0.68 -1.6
194,701 - HER17_RS00830 0.68 -3.1
194,701 - HER17_RS00830 0.68 -1.8
194,701 - HER17_RS00830 0.68 -2.2
194,749 + HER17_RS00830 0.73 +0.2
194,749 + HER17_RS00830 0.73 -1.7
194,749 + HER17_RS00830 0.73 -2.0
194,797 - HER17_RS00830 0.79 -1.1
194,797 - HER17_RS00830 0.79 -0.1
194,834 + HER17_RS00830 0.84 -3.3
194,834 + HER17_RS00830 0.84 -1.4
194,834 + HER17_RS00830 0.84 -0.8
194,834 + HER17_RS00830 0.84 -2.1
194,834 + HER17_RS00830 0.84 -1.3
194,834 + HER17_RS00830 0.84 -2.0
194,835 - HER17_RS00830 0.84 -0.6
194,835 - HER17_RS00830 0.84 -0.6
194,835 - HER17_RS00830 0.84 -0.3
194,945 + +0.5
194,946 - -0.5
194,972 - +0.2
194,994 + -0.7
194,994 + -1.7
194,994 + -1.3
194,994 + -0.6
194,994 + -1.2
194,995 - -0.6
194,995 - +0.0
194,995 - -1.8
194,995 - -0.4
195,004 + -0.6
195,005 - +0.5
195,005 - +0.4
195,005 - -0.1
195,005 - -0.7
195,010 + -2.2
195,010 + -2.4
195,010 + -2.6
195,010 + -0.9
195,041 - +0.4
195,050 + -1.1
195,050 + -2.0
195,177 + +0.1
195,177 + +0.4
195,178 - -0.2
195,180 + -0.5
195,181 - +0.4
195,210 - -0.3
195,210 - -0.7
195,216 - -0.5
195,292 + -1.6
195,292 + +1.4
195,293 - +0.7
195,319 + +0.0
195,320 - -0.0
195,325 + +0.5
195,325 + +1.4
195,325 + -0.6
195,325 + -0.6
195,326 - +0.3
195,330 - +0.3
195,370 - -0.1
195,370 - +1.3
195,370 - -0.2
195,392 + -1.7
195,392 + +0.2
195,392 + +0.8
195,392 + -0.3
195,393 - +0.7
195,393 - +0.4
195,393 - -0.4
195,393 - +0.8
195,403 + -0.1
195,439 + +0.9
195,440 - +0.4
195,596 - HER17_RS00835 0.23 +0.4
195,779 + +0.3
195,830 + +0.4
195,831 - -0.6
195,831 - +0.6
195,877 - +1.5
195,899 + +0.2
195,900 - -0.2
195,900 - +0.2
195,900 - -0.3
195,902 + +0.0
195,933 + +0.9
195,933 + +0.3
195,933 + -0.3
195,933 + +0.4
195,934 - -0.4
195,943 - -0.2
195,953 + HER17_RS00840 0.11 +0.2
195,953 + HER17_RS00840 0.11 +0.3
195,953 + HER17_RS00840 0.11 -0.1
196,300 - HER17_RS00840 0.82 -1.7
196,314 + HER17_RS00840 0.85 +0.6
196,315 - HER17_RS00840 0.85 +0.8
196,356 + +0.9
196,357 - -0.2
196,374 + +0.0
196,380 - -1.0
196,380 - -1.0
196,386 + +0.9
196,392 + +0.2
196,421 + -0.2
196,421 + +0.2
196,421 + -0.3
196,421 + +0.4
196,421 + -1.2
196,422 - +0.5
196,422 - +0.2
196,422 - +0.7
196,422 - -0.1
196,422 - +0.4
196,422 - -0.1
196,422 - +0.0
196,423 + +0.2
196,423 + -0.8
196,424 - +0.5
196,424 - -0.6
196,480 + +0.8
196,481 - -0.6
196,481 - -0.9
196,522 + -0.2
196,530 + -0.8
196,531 - +0.1
196,630 + HER17_RS00845 0.12 +0.3
196,631 - HER17_RS00845 0.12 +0.3
196,631 - HER17_RS00845 0.12 -0.6
196,631 - HER17_RS00845 0.12 -1.9
196,696 + HER17_RS00845 0.19 -0.6
196,697 - HER17_RS00845 0.19 -0.1
196,697 - HER17_RS00845 0.19 +1.3
196,697 - HER17_RS00845 0.19 +0.4
196,697 - HER17_RS00845 0.19 -0.8
196,753 + HER17_RS00845 0.25 -0.1

Or see this region's nucleotide sequence