Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS21405

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
4,797,036	+		HER17_RS21400	0.41	+0.4
4,797,037	-		HER17_RS21400	0.41	-0.6
4,797,039	+		HER17_RS21400	0.41	-0.0
4,797,039	+		HER17_RS21400	0.41	-1.0
4,797,040	-		HER17_RS21400	0.41	-0.4
4,797,040	-		HER17_RS21400	0.41	+0.5
4,797,040	-		HER17_RS21400	0.41	-0.1
4,797,040	-		HER17_RS21400	0.41	+0.8
4,797,040	-		HER17_RS21400	0.41	-0.4
4,797,040	-		HER17_RS21400	0.41	+0.4
4,797,065	+		HER17_RS21400	0.43	-1.8
4,797,065	+		HER17_RS21400	0.43	-1.0
4,797,066	-		HER17_RS21400	0.43	+0.2
4,797,068	+		HER17_RS21400	0.43	-0.7
4,797,068	+		HER17_RS21400	0.43	-0.2
4,797,068	+		HER17_RS21400	0.43	-0.2
4,797,069	-		HER17_RS21400	0.43	+1.2
4,797,069	-		HER17_RS21400	0.43	+0.2
4,797,069	-		HER17_RS21400	0.43	+0.6
4,797,093	+		HER17_RS21400	0.45	-0.4
4,797,093	+		HER17_RS21400	0.45	-0.9
4,797,097	-		HER17_RS21400	0.45	+0.2
4,797,097	-		HER17_RS21400	0.45	+0.4
4,797,101	+		HER17_RS21400	0.45	-0.2
4,797,102	-		HER17_RS21400	0.45	+0.4
4,797,102	-		HER17_RS21400	0.45	+0.3
4,797,105	+		HER17_RS21400	0.46	+1.1
4,797,124	+		HER17_RS21400	0.47	-0.5
4,797,232	-		HER17_RS21400	0.55	-0.2
4,797,232	-		HER17_RS21400	0.55	-1.2
4,797,318	-		HER17_RS21400	0.61	-0.4
4,797,382	+		HER17_RS21400	0.65	-0.2
4,797,382	+		HER17_RS21400	0.65	-0.2
4,797,382	+		HER17_RS21400	0.65	-0.2
4,797,383	-		HER17_RS21400	0.66	-0.4
4,797,395	+		HER17_RS21400	0.66	+0.7
4,797,450	+		HER17_RS21400	0.70	+0.2
4,797,450	+		HER17_RS21400	0.70	+0.1
4,797,460	-		HER17_RS21400	0.71	-0.4
4,797,591	+		HER17_RS21400	0.80	+0.2
4,797,592	-		HER17_RS21400	0.81	+1.0
4,797,592	-		HER17_RS21400	0.81	+0.3
4,797,636	+		HER17_RS21400	0.84	-1.0
4,797,702	+		HER17_RS21400	0.88	+0.2
4,797,703	-		HER17_RS21400	0.89	-1.0
4,797,735	-				-0.8
4,797,785	+				-0.5
4,797,835	-				+0.3
4,797,835	-				+0.7
4,797,875	+				-1.0
4,797,896	-				-0.3
4,797,896	-				+0.1
4,797,948	+				+0.5
4,797,948	+				+0.6
4,797,948	+				+0.3
4,797,948	+				+0.6
4,797,952	+				-0.0
4,797,953	-				-0.2
4,797,953	-				-0.4
4,797,979	+				+0.4
4,797,980	-				-0.6
4,797,980	-				-0.1
4,798,038	+				+0.1
4,798,078	-				-2.2
4,798,083	+				-0.1
4,798,083	+				+0.3
4,798,083	+				+0.7
4,798,083	+				-0.2
4,798,083	+				+0.0
4,798,083	+				-0.1
4,798,083	+				-0.4
4,798,084	-				-0.4
4,798,084	-				+0.3
4,798,084	-				+0.6
4,798,084	-				+1.5
4,798,084	-				+0.8
4,798,084	-				-0.3
4,798,084	-				+0.4
4,798,085	+				+0.3
4,798,085	+				-0.9
4,798,085	+				-0.4
4,798,085	+				-0.7
4,798,085	+				+0.6
4,798,085	+				-0.2
4,798,085	+				-0.7
4,798,085	+				-0.0
4,798,085	+				-0.5
4,798,085	+				+1.1
4,798,085	+				-0.5
4,798,085	+				-1.8
4,798,086	-				-0.3
4,798,086	-				+0.3
4,798,089	+				+0.1
4,798,089	+				-0.1
4,798,089	+				-1.5
4,798,089	+				+0.5
4,798,089	+				+1.7
4,798,089	+				-0.3
4,798,089	+				+0.7
4,798,089	+				-0.2
4,798,089	+				+0.4
4,798,089	+				+0.1
4,798,089	+				+0.1
4,798,089	+				+0.4
4,798,089	+				-0.1
4,798,090	-				+0.1
4,798,090	-				+0.8
4,798,090	-				-0.5
4,798,090	-				+1.5
4,798,090	-				+0.5
4,798,090	-				+0.3
4,798,090	-				+0.5
4,798,090	-				-0.2
4,798,090	-				+0.4
4,798,090	-				+0.3
4,798,090	-				+0.2
4,798,090	-				-0.4
4,798,090	-				+0.3
4,798,090	-				-0.2
4,798,092	+				-0.4
4,798,092	+				+0.4
4,798,093	-				+0.2
4,798,093	-				+0.4
4,798,123	-				+0.3
4,798,126	+				+1.3
4,798,126	+				-2.5
4,798,126	+				+0.0
4,798,127	-				-0.7
4,798,127	-				-0.4
4,798,127	-				+0.3
4,798,175	-				+0.2
4,798,201	+		HER17_RS21405	0.11	+0.7
4,798,201	+		HER17_RS21405	0.11	+0.7
4,798,202	-		HER17_RS21405	0.11	+0.5
4,798,389	+		HER17_RS21405	0.22	-0.3
4,798,389	+		HER17_RS21405	0.22	+0.2
4,798,389	+		HER17_RS21405	0.22	-0.6
4,798,389	+		HER17_RS21405	0.22	-0.1
4,798,390	-		HER17_RS21405	0.22	+0.5
4,798,490	+		HER17_RS21405	0.28	-0.0
4,798,804	+		HER17_RS21405	0.46	-0.3
4,798,943	-		HER17_RS21405	0.55	-1.7
4,798,951	+		HER17_RS21405	0.55	+0.4
4,799,050	+		HER17_RS21405	0.61	+0.0
4,799,051	-		HER17_RS21405	0.61	-0.6
4,799,051	-		HER17_RS21405	0.61	+0.5
4,799,051	-		HER17_RS21405	0.61	-0.1
4,799,053	+		HER17_RS21405	0.61	+0.2
4,799,064	+		HER17_RS21405	0.62	+0.7
4,799,099	+		HER17_RS21405	0.64	+2.3
4,799,099	+		HER17_RS21405	0.64	-0.5
4,799,100	-		HER17_RS21405	0.64	+0.8
4,799,314	+		HER17_RS21405	0.77	-0.3
4,799,339	-		HER17_RS21405	0.78	+0.1
4,799,417	-		HER17_RS21405	0.83	+0.3
4,799,470	+		HER17_RS21405	0.86	-0.7
4,799,470	+		HER17_RS21405	0.86	-0.3
4,799,605	+				-0.2
4,799,605	+				-1.4
4,799,606	-				+0.2
4,799,606	-				+0.8
4,799,606	-				+0.4
4,799,614	+				+0.6
4,799,615	-				+0.8
4,799,650	+				+0.4
4,799,651	-				+0.0
4,799,653	+				-0.4
4,799,654	-				+0.4
4,799,709	-				-0.5
4,799,712	+				-0.0
4,799,713	-				-1.2
4,799,713	-				+0.5
4,799,713	-				+0.3
4,799,715	+				+0.0
4,799,716	-				-0.1
4,799,757	+				+0.8
4,799,757	+				-1.0
4,799,757	+				+0.2
4,799,757	+				-0.7
4,799,758	-				+0.2
4,799,758	-				-0.2
4,799,758	-				-0.7
4,799,758	-				+0.2
4,799,758	-				+0.3
4,799,758	-				-0.6
4,799,758	-				-1.4
4,799,758	-				-0.5
4,799,823	+				-1.3
4,799,826	+				+0.9
4,799,826	+				-0.6
4,799,826	+				+0.2
4,799,826	+				+0.5
4,799,827	-				+1.7
4,799,833	+				-0.5
4,799,833	+				+0.7
4,799,833	+				-0.4
4,799,834	-				-0.2
4,799,834	-				-0.1
4,799,849	-				+0.0
4,799,853	+				-1.2
4,799,853	+				+0.4
4,799,853	+				-0.2
4,799,853	+				+0.2
4,799,853	+				-0.6
4,799,853	+				-0.0
4,799,854	-				+0.4
4,799,854	-				+0.2
4,799,854	-				-0.3
4,799,854	-				+0.5
4,799,856	+				+0.0
4,799,857	-				+0.6
4,799,874	-				+0.0
4,799,874	-				-1.2
4,799,874	-				-0.2
4,799,889	+				+0.2
4,799,890	-				+0.3
4,799,965	+				-0.4
4,799,965	+				+0.8
4,799,965	+				-0.4
4,799,966	-				-0.6
4,799,967	+				-1.2
4,799,967	+				-0.2
4,799,968	-				-0.3
4,799,968	-				-0.3
4,799,968	-				-1.1
4,799,968	-				-0.7
4,799,992	+				+0.6
4,800,037	+		HER17_RS21410	0.14	+0.3
4,800,080	+		HER17_RS21410	0.18	+0.2
4,800,091	+		HER17_RS21410	0.20	-0.9
4,800,091	+		HER17_RS21410	0.20	-0.3
4,800,092	-		HER17_RS21410	0.20	+0.7
4,800,092	-		HER17_RS21410	0.20	+0.3
4,800,111	-		HER17_RS21410	0.22	+1.0
4,800,111	-		HER17_RS21410	0.22	-0.6
4,800,124	-		HER17_RS21410	0.23	-2.3
4,800,283	+		HER17_RS21410	0.40	+1.7
4,800,284	-		HER17_RS21410	0.40	-0.3
4,800,286	+		HER17_RS21410	0.40	-0.7
4,800,303	+		HER17_RS21410	0.42	+0.1
4,800,303	+		HER17_RS21410	0.42	-1.0
4,800,304	-		HER17_RS21410	0.42	-0.7
4,800,351	+		HER17_RS21410	0.47	-0.2
4,800,352	-		HER17_RS21410	0.47	-0.6
4,800,421	+		HER17_RS21410	0.55	-1.2
4,800,422	-		HER17_RS21410	0.55	-0.1
4,800,574	+		HER17_RS21410	0.71	-1.3
4,800,589	+		HER17_RS21410	0.73	-0.5
4,800,590	-		HER17_RS21410	0.73	+0.4
4,800,593	+		HER17_RS21410	0.73	+0.8
4,800,594	-		HER17_RS21410	0.73	-0.5
4,800,594	-		HER17_RS21410	0.73	+0.2
4,800,626	+		HER17_RS21410	0.76	-0.7
4,800,627	-		HER17_RS21410	0.77	+0.2
4,800,649	+		HER17_RS21410	0.79	-2.2
4,800,661	+		HER17_RS21410	0.80	-0.2
4,800,661	+		HER17_RS21410	0.80	-0.4
4,800,661	+		HER17_RS21410	0.80	+0.3