Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS18675

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
4,194,757	+		HER17_RS18665	0.86	+0.8
4,194,758	-		HER17_RS18665	0.86	+0.3
4,194,758	-		HER17_RS18665	0.86	+0.1
4,194,789	-				-1.2
4,194,789	-				-0.2
4,194,789	-				+0.2
4,194,814	+				-2.3
4,194,815	-				-0.1
4,194,826	+				-0.0
4,194,826	+				-0.7
4,194,827	-				+0.4
4,194,827	-				+0.5
4,194,831	+				+0.4
4,194,831	+				-0.2
4,194,831	+				-0.2
4,194,832	-				+1.4
4,194,874	+				-0.3
4,194,887	-				-1.7
4,194,887	-				+0.1
4,194,888	+				-0.5
4,194,889	-				+0.6
4,194,912	-				+0.1
4,194,912	-				+1.9
4,194,922	+				+0.1
4,194,923	-				+0.9
4,194,960	+				+0.7
4,195,002	-				+1.2
4,195,002	-				+0.1
4,195,015	-				-0.2
4,195,015	-				+0.4
4,195,030	+				-0.1
4,195,030	+				-0.0
4,195,031	-				-2.9
4,195,035	+				+0.5
4,195,036	-				+0.5
4,195,036	-				-0.1
4,195,051	+				-0.3
4,195,054	+				-0.3
4,195,054	+				-2.7
4,195,055	-				+0.6
4,195,055	-				-0.1
4,195,055	-				-0.1
4,195,057	+				-0.5
4,195,068	+				-0.4
4,195,069	-				-0.1
4,195,174	+		HER17_RS18670	0.35	+0.1
4,195,174	+		HER17_RS18670	0.35	+0.2
4,195,175	-		HER17_RS18670	0.35	+0.1
4,195,225	-		HER17_RS18670	0.52	-0.2
4,195,225	-		HER17_RS18670	0.52	-0.7
4,195,225	-		HER17_RS18670	0.52	-0.4
4,195,250	+		HER17_RS18670	0.61	-0.1
4,195,251	-		HER17_RS18670	0.61	+0.1
4,195,251	-		HER17_RS18670	0.61	+0.3
4,195,251	-		HER17_RS18670	0.61	+0.3
4,195,251	-		HER17_RS18670	0.61	+0.1
4,195,372	+				+0.5
4,195,398	+				-0.4
4,195,400	+				-1.1
4,195,401	-				+1.7
4,195,401	-				+0.5
4,195,401	-				-0.4
4,195,472	+				-0.7
4,195,503	+				-0.1
4,195,503	+				+0.5
4,195,526	-				-0.2
4,195,532	-				-0.7
4,195,546	-				-0.5
4,195,634	+				+0.2
4,195,752	+				+0.0
4,195,753	-				-0.1
4,195,913	-		HER17_RS18675	0.16	+0.6
4,196,232	-		HER17_RS18675	0.32	-0.9
4,196,232	-		HER17_RS18675	0.32	+0.4
4,196,452	-		HER17_RS18675	0.42	-0.4
4,196,480	+		HER17_RS18675	0.44	+0.2
4,196,480	+		HER17_RS18675	0.44	-0.3
4,196,481	-		HER17_RS18675	0.44	-0.2
4,196,481	-		HER17_RS18675	0.44	-0.9
4,196,481	-		HER17_RS18675	0.44	-0.6
4,196,547	-		HER17_RS18675	0.47	+0.8
4,196,806	+		HER17_RS18675	0.60	-0.6
4,196,807	-		HER17_RS18675	0.60	+0.0
4,196,807	-		HER17_RS18675	0.60	-0.2
4,196,879	-		HER17_RS18675	0.63	+0.1
4,196,891	+		HER17_RS18675	0.64	+0.2
4,196,892	-		HER17_RS18675	0.64	+0.4
4,196,991	+		HER17_RS18675	0.69	-0.4
4,196,992	-		HER17_RS18675	0.69	+0.1
4,197,003	+		HER17_RS18675	0.69	-1.0
4,197,021	+		HER17_RS18675	0.70	-0.1
4,197,022	-		HER17_RS18675	0.70	+0.4
4,197,034	+		HER17_RS18675	0.71	-0.1
4,197,121	+		HER17_RS18675	0.75	+0.3
4,197,122	-		HER17_RS18675	0.75	+1.3
4,197,156	+		HER17_RS18675	0.77	-0.7
4,197,156	+		HER17_RS18675	0.77	-0.5
4,197,156	+		HER17_RS18675	0.77	-0.5
4,197,156	+		HER17_RS18675	0.77	+0.4
4,197,157	-		HER17_RS18675	0.77	+0.0
4,197,165	+		HER17_RS18675	0.77	+0.3
4,197,165	+		HER17_RS18675	0.77	+0.0
4,197,165	+		HER17_RS18675	0.77	-0.1
4,197,223	-		HER17_RS18675	0.80	+0.6
4,197,230	+		HER17_RS18675	0.80	+1.4
4,197,230	+		HER17_RS18675	0.80	-0.3
4,197,230	+		HER17_RS18675	0.80	+0.2
4,197,231	-		HER17_RS18675	0.80	-1.0
4,197,231	-		HER17_RS18675	0.80	+0.7
4,197,231	-		HER17_RS18675	0.80	+0.5
4,197,231	-		HER17_RS18675	0.80	+2.4
4,197,231	-		HER17_RS18675	0.80	+0.7
4,197,231	-		HER17_RS18675	0.80	+0.8
4,197,231	-		HER17_RS18675	0.80	-0.7
4,197,265	-		HER17_RS18675	0.82	+0.6
4,197,265	-		HER17_RS18675	0.82	-0.2
4,197,291	+		HER17_RS18675	0.83	-0.2
4,197,291	+		HER17_RS18675	0.83	-0.0
4,197,291	+		HER17_RS18675	0.83	+1.1
4,197,292	-		HER17_RS18675	0.83	+0.4
4,197,292	-		HER17_RS18675	0.83	-0.6
4,197,292	-		HER17_RS18675	0.83	+0.1
4,197,297	-		HER17_RS18675	0.83	+1.7
4,197,299	+		HER17_RS18675	0.84	+0.2
4,197,299	+		HER17_RS18675	0.84	+0.2
4,197,299	+		HER17_RS18675	0.84	+0.2
4,197,353	+		HER17_RS18675	0.86	-0.6
4,197,407	-		HER17_RS18675	0.89	-0.5
4,197,414	+		HER17_RS18675	0.89	+0.7
4,197,414	+		HER17_RS18675	0.89	+0.2
4,197,415	-		HER17_RS18675	0.89	-0.3
4,197,415	-		HER17_RS18675	0.89	-0.1
4,197,483	+				-0.1
4,197,483	+				+0.3
4,197,483	+				+0.4
4,197,484	-				-0.5
4,197,484	-				+1.4
4,197,484	-				+0.1
4,197,510	+				+0.3
4,197,510	+				+0.4
4,197,511	-				-0.1
4,197,511	-				+0.7
4,197,511	-				+0.9
4,197,517	+				+0.9
4,197,517	+				+0.5
4,197,517	+				-0.1
4,197,517	+				-1.1
4,197,517	+				-0.5
4,197,518	-				-0.2
4,197,518	-				+0.4
4,197,518	-				-1.2
4,197,635	-				-0.9
4,197,639	+				-0.4
4,197,668	+				-0.2
4,197,748	+				+0.4
4,197,749	-				+0.3
4,197,753	+				+0.4
4,197,777	+		HER17_RS18680	0.11	+0.5
4,197,778	-		HER17_RS18680	0.11	-0.1
4,197,815	+		HER17_RS18680	0.15	+0.3
4,197,816	-		HER17_RS18680	0.15	-0.8
4,197,873	-		HER17_RS18680	0.20	+0.6
4,197,894	-		HER17_RS18680	0.22	+1.4
4,197,935	+		HER17_RS18680	0.25	-2.1
4,197,936	-		HER17_RS18680	0.25	+0.5
4,197,936	-		HER17_RS18680	0.25	-0.3
4,198,000	+		HER17_RS18680	0.31	-0.8
4,198,000	+		HER17_RS18680	0.31	+0.4
4,198,000	+		HER17_RS18680	0.31	+0.1
4,198,000	+		HER17_RS18680	0.31	-0.3
4,198,000	+		HER17_RS18680	0.31	-0.3
4,198,001	-		HER17_RS18680	0.31	+0.2
4,198,001	-		HER17_RS18680	0.31	-0.1
4,198,001	-		HER17_RS18680	0.31	-1.7
4,198,001	-		HER17_RS18680	0.31	+0.6
4,198,094	+		HER17_RS18680	0.39	-0.7
4,198,094	+		HER17_RS18680	0.39	+0.1
4,198,101	+		HER17_RS18680	0.40	+0.2
4,198,102	-		HER17_RS18680	0.40	+1.0
4,198,102	-		HER17_RS18680	0.40	-0.6
4,198,124	+		HER17_RS18680	0.42	-0.6
4,198,124	+		HER17_RS18680	0.42	+0.3
4,198,154	+		HER17_RS18680	0.44	+0.6
4,198,162	+		HER17_RS18680	0.45	+0.3
4,198,163	-		HER17_RS18680	0.45	+0.3
4,198,163	-		HER17_RS18680	0.45	-0.5
4,198,163	-		HER17_RS18680	0.45	+0.9
4,198,170	-		HER17_RS18680	0.46	+0.9
4,198,220	+		HER17_RS18680	0.50	+0.0
4,198,221	-		HER17_RS18680	0.50	+0.3
4,198,221	-		HER17_RS18680	0.50	-0.2
4,198,334	+		HER17_RS18680	0.60	-1.0
4,198,334	+		HER17_RS18680	0.60	+0.0
4,198,334	+		HER17_RS18680	0.60	+0.7
4,198,334	+		HER17_RS18680	0.60	-0.4
4,198,340	+		HER17_RS18680	0.61	+0.4
4,198,341	-		HER17_RS18680	0.61	+0.1
4,198,341	-		HER17_RS18680	0.61	+1.4
4,198,341	-		HER17_RS18680	0.61	-0.1
4,198,341	-		HER17_RS18680	0.61	+0.3
4,198,347	-		HER17_RS18680	0.61	+0.6
4,198,476	+		HER17_RS18680	0.73	+0.2
4,198,477	-		HER17_RS18680	0.73	-0.8
4,198,490	+		HER17_RS18680	0.74	-0.9
4,198,538	+		HER17_RS18680	0.78	+0.1
4,198,538	+		HER17_RS18680	0.78	-0.7
4,198,539	-		HER17_RS18680	0.78	+0.5
4,198,539	-		HER17_RS18680	0.78	-1.3
4,198,564	+		HER17_RS18680	0.80	-0.2
4,198,564	+		HER17_RS18680	0.80	+0.0
4,198,564	+		HER17_RS18680	0.80	+0.4
4,198,565	-		HER17_RS18680	0.80	-1.1
4,198,565	-		HER17_RS18680	0.80	+0.5
4,198,565	-		HER17_RS18680	0.80	+0.3
4,198,565	-		HER17_RS18680	0.80	-0.3
4,198,565	-		HER17_RS18680	0.80	+1.0
4,198,625	+		HER17_RS18680	0.86	-0.4
4,198,625	+		HER17_RS18680	0.86	+0.1
4,198,626	-		HER17_RS18680	0.86	-0.2
4,198,626	-		HER17_RS18680	0.86	+0.6
4,198,626	-		HER17_RS18680	0.86	+0.9