Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS18260 and HER17_RS18265 are separated by 10 nucleotides HER17_RS18265 and HER17_RS18270 are separated by 283 nucleotides HER17_RS18270 and HER17_RS18275 are separated by 140 nucleotides
HER17_RS18260: HER17_RS18260 - amino acid adenylation domain-containing protein, at 4,112,681 to 4,114,192
_RS18260
HER17_RS18265: HER17_RS18265 - phosphopantetheine-binding protein, at 4,114,203 to 4,114,475
_RS18265
HER17_RS18270: HER17_RS18270 - hypothetical protein, at 4,114,759 to 4,115,031
_RS18270
HER17_RS18275: HER17_RS18275 - type I polyketide synthase, at 4,115,172 to 4,120,673
_RS18275
Position (kb) 4114
4115
4116 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4113.794 kb on - strand, within HER17_RS18260 at 4113.879 kb on + strand, within HER17_RS18260 at 4113.940 kb on - strand, within HER17_RS18260 at 4113.940 kb on - strand, within HER17_RS18260 at 4113.958 kb on + strand, within HER17_RS18260 at 4113.959 kb on - strand, within HER17_RS18260 at 4113.959 kb on - strand, within HER17_RS18260 at 4114.022 kb on + strand, within HER17_RS18260 at 4114.022 kb on + strand, within HER17_RS18260 at 4114.022 kb on + strand, within HER17_RS18260 at 4114.026 kb on + strand, within HER17_RS18260 at 4114.026 kb on + strand, within HER17_RS18260 at 4114.027 kb on - strand, within HER17_RS18260 at 4114.027 kb on - strand, within HER17_RS18260 at 4114.029 kb on + strand, within HER17_RS18260 at 4114.062 kb on + strand at 4114.062 kb on + strand at 4114.062 kb on + strand at 4114.063 kb on - strand at 4114.182 kb on + strand at 4114.187 kb on - strand at 4114.191 kb on - strand at 4114.222 kb on + strand at 4114.223 kb on - strand at 4114.257 kb on - strand, within HER17_RS18265 at 4114.270 kb on + strand, within HER17_RS18265 at 4114.271 kb on - strand, within HER17_RS18265 at 4114.274 kb on + strand, within HER17_RS18265 at 4114.274 kb on + strand, within HER17_RS18265 at 4114.275 kb on - strand, within HER17_RS18265 at 4114.275 kb on - strand, within HER17_RS18265 at 4114.380 kb on - strand, within HER17_RS18265 at 4114.380 kb on - strand, within HER17_RS18265 at 4114.380 kb on - strand, within HER17_RS18265 at 4114.385 kb on + strand, within HER17_RS18265 at 4114.385 kb on + strand, within HER17_RS18265 at 4114.433 kb on + strand, within HER17_RS18265 at 4114.473 kb on + strand at 4114.580 kb on + strand at 4114.613 kb on - strand at 4114.621 kb on - strand at 4114.677 kb on + strand at 4114.677 kb on + strand at 4114.677 kb on + strand at 4114.677 kb on + strand at 4114.679 kb on + strand at 4114.679 kb on + strand at 4114.705 kb on + strand at 4114.706 kb on - strand at 4114.731 kb on + strand at 4114.732 kb on - strand at 4114.732 kb on - strand at 4114.742 kb on + strand at 4114.743 kb on - strand at 4114.746 kb on - strand at 4114.755 kb on + strand at 4114.755 kb on + strand at 4114.755 kb on + strand at 4114.755 kb on + strand at 4114.862 kb on - strand, within HER17_RS18270 at 4114.864 kb on + strand, within HER17_RS18270 at 4114.865 kb on - strand, within HER17_RS18270 at 4114.891 kb on - strand, within HER17_RS18270 at 4114.920 kb on + strand, within HER17_RS18270 at 4114.975 kb on - strand, within HER17_RS18270 at 4115.040 kb on + strand at 4115.040 kb on + strand at 4115.041 kb on - strand at 4115.045 kb on + strand at 4115.045 kb on + strand at 4115.045 kb on + strand at 4115.045 kb on + strand at 4115.045 kb on + strand at 4115.045 kb on + strand at 4115.045 kb on + strand at 4115.046 kb on - strand at 4115.046 kb on - strand at 4115.058 kb on + strand at 4115.058 kb on + strand at 4115.058 kb on + strand at 4115.059 kb on - strand at 4115.072 kb on - strand at 4115.101 kb on + strand at 4115.102 kb on - strand at 4115.102 kb on - strand at 4115.102 kb on - strand at 4115.149 kb on + strand at 4115.150 kb on - strand at 4115.151 kb on + strand at 4115.151 kb on + strand at 4115.151 kb on + strand at 4115.152 kb on - strand at 4115.152 kb on - strand at 4115.152 kb on - strand at 4115.205 kb on - strand at 4115.215 kb on + strand at 4115.215 kb on + strand at 4115.216 kb on - strand at 4115.216 kb on - strand at 4115.361 kb on + strand at 4115.361 kb on + strand at 4115.361 kb on + strand at 4115.361 kb on + strand at 4115.364 kb on - strand at 4115.364 kb on - strand at 4115.423 kb on + strand at 4115.424 kb on - strand at 4115.424 kb on - strand at 4115.445 kb on - strand at 4115.464 kb on + strand at 4115.465 kb on - strand at 4115.465 kb on - strand at 4115.520 kb on + strand at 4115.521 kb on - strand at 4115.605 kb on - strand at 4115.647 kb on - strand at 4115.647 kb on - strand at 4115.647 kb on - strand at 4115.647 kb on - strand at 4115.651 kb on - strand at 4115.662 kb on + strand at 4115.667 kb on + strand at 4115.667 kb on + strand at 4115.667 kb on + strand at 4115.668 kb on - strand at 4115.668 kb on - strand at 4115.701 kb on + strand at 4115.702 kb on - strand at 4115.702 kb on - strand at 4115.702 kb on - strand at 4115.702 kb on - strand at 4115.829 kb on + strand, within HER17_RS18275 at 4115.829 kb on + strand, within HER17_RS18275 at 4115.829 kb on + strand, within HER17_RS18275 at 4115.829 kb on + strand, within HER17_RS18275 at 4115.830 kb on - strand, within HER17_RS18275 at 4115.830 kb on - strand, within HER17_RS18275 at 4115.830 kb on - strand, within HER17_RS18275 at 4115.830 kb on - strand, within HER17_RS18275 at 4115.830 kb on - strand, within HER17_RS18275 at 4115.830 kb on - strand, within HER17_RS18275 at 4115.831 kb on + strand, within HER17_RS18275 at 4115.831 kb on + strand, within HER17_RS18275 at 4115.831 kb on + strand, within HER17_RS18275 at 4115.831 kb on + strand, within HER17_RS18275 at 4115.831 kb on + strand, within HER17_RS18275 at 4115.831 kb on + strand, within HER17_RS18275 at 4115.831 kb on + strand, within HER17_RS18275 at 4115.831 kb on + strand, within HER17_RS18275 at 4115.831 kb on + strand, within HER17_RS18275 at 4115.831 kb on + strand, within HER17_RS18275 at 4115.832 kb on - strand, within HER17_RS18275 at 4115.832 kb on - strand, within HER17_RS18275 at 4115.832 kb on - strand, within HER17_RS18275 at 4115.832 kb on - strand, within HER17_RS18275 at 4115.869 kb on - strand, within HER17_RS18275 at 4115.869 kb on - strand, within HER17_RS18275 at 4115.967 kb on - strand, within HER17_RS18275 at 4115.967 kb on - strand, within HER17_RS18275 at 4115.970 kb on + strand, within HER17_RS18275
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 4,113,794 - HER17_RS18260 0.74 -0.2 4,113,879 + HER17_RS18260 0.79 -0.2 4,113,940 - HER17_RS18260 0.83 +0.6 4,113,940 - HER17_RS18260 0.83 -0.0 4,113,958 + HER17_RS18260 0.84 -1.2 4,113,959 - HER17_RS18260 0.85 +1.1 4,113,959 - HER17_RS18260 0.85 -0.3 4,114,022 + HER17_RS18260 0.89 -0.2 4,114,022 + HER17_RS18260 0.89 -1.8 4,114,022 + HER17_RS18260 0.89 +0.8 4,114,026 + HER17_RS18260 0.89 -0.2 4,114,026 + HER17_RS18260 0.89 -0.5 4,114,027 - HER17_RS18260 0.89 -0.5 4,114,027 - HER17_RS18260 0.89 +0.3 4,114,029 + HER17_RS18260 0.89 +0.2 4,114,062 + +0.1 4,114,062 + -0.9 4,114,062 + +0.2 4,114,063 - +0.5 4,114,182 + -0.6 4,114,187 - -0.2 4,114,191 - -0.3 4,114,222 + +0.2 4,114,223 - -1.0 4,114,257 - HER17_RS18265 0.20 -1.2 4,114,270 + HER17_RS18265 0.25 +0.3 4,114,271 - HER17_RS18265 0.25 -1.0 4,114,274 + HER17_RS18265 0.26 -0.3 4,114,274 + HER17_RS18265 0.26 -0.6 4,114,275 - HER17_RS18265 0.26 +0.1 4,114,275 - HER17_RS18265 0.26 +0.5 4,114,380 - HER17_RS18265 0.65 -0.3 4,114,380 - HER17_RS18265 0.65 +0.1 4,114,380 - HER17_RS18265 0.65 -0.4 4,114,385 + HER17_RS18265 0.67 -0.5 4,114,385 + HER17_RS18265 0.67 +0.9 4,114,433 + HER17_RS18265 0.84 -0.2 4,114,473 + -0.8 4,114,580 + +0.2 4,114,613 - -2.1 4,114,621 - +0.3 4,114,677 + -0.7 4,114,677 + -0.4 4,114,677 + -0.5 4,114,677 + -0.5 4,114,679 + -1.5 4,114,679 + -1.3 4,114,705 + -0.4 4,114,706 - +0.0 4,114,731 + -0.3 4,114,732 - -0.9 4,114,732 - +0.6 4,114,742 + -0.6 4,114,743 - -0.3 4,114,746 - +0.5 4,114,755 + -0.1 4,114,755 + -0.3 4,114,755 + -0.9 4,114,755 + -1.5 4,114,862 - HER17_RS18270 0.38 -0.0 4,114,864 + HER17_RS18270 0.38 -0.2 4,114,865 - HER17_RS18270 0.39 +0.4 4,114,891 - HER17_RS18270 0.48 -0.3 4,114,920 + HER17_RS18270 0.59 +0.0 4,114,975 - HER17_RS18270 0.79 -1.2 4,115,040 + +0.3 4,115,040 + -0.7 4,115,041 - +0.3 4,115,045 + -0.0 4,115,045 + -0.0 4,115,045 + +1.4 4,115,045 + -0.7 4,115,045 + -0.3 4,115,045 + -0.3 4,115,045 + +0.2 4,115,046 - +1.1 4,115,046 - +0.4 4,115,058 + -2.7 4,115,058 + -0.5 4,115,058 + -0.2 4,115,059 - +0.4 4,115,072 - -0.1 4,115,101 + -1.0 4,115,102 - -0.2 4,115,102 - -0.1 4,115,102 - -0.1 4,115,149 + -0.2 4,115,150 - +0.5 4,115,151 + +0.9 4,115,151 + -0.2 4,115,151 + -0.4 4,115,152 - -1.6 4,115,152 - -0.0 4,115,152 - +0.3 4,115,205 - +0.7 4,115,215 + -0.2 4,115,215 + -0.6 4,115,216 - +0.1 4,115,216 - +0.2 4,115,361 + -2.2 4,115,361 + +0.0 4,115,361 + +1.0 4,115,361 + +0.5 4,115,364 - -0.4 4,115,364 - +0.6 4,115,423 + +0.5 4,115,424 - +0.2 4,115,424 - -0.2 4,115,445 - +0.2 4,115,464 + -0.1 4,115,465 - +0.3 4,115,465 - +0.9 4,115,520 + +0.4 4,115,521 - +0.5 4,115,605 - +0.2 4,115,647 - +0.4 4,115,647 - +0.5 4,115,647 - +0.2 4,115,647 - -0.0 4,115,651 - +0.4 4,115,662 + -0.0 4,115,667 + -0.3 4,115,667 + -0.5 4,115,667 + -0.0 4,115,668 - +1.5 4,115,668 - -0.7 4,115,701 + -0.4 4,115,702 - +0.1 4,115,702 - -0.9 4,115,702 - +0.3 4,115,702 - -1.1 4,115,829 + HER17_RS18275 0.12 +0.9 4,115,829 + HER17_RS18275 0.12 +0.2 4,115,829 + HER17_RS18275 0.12 +0.2 4,115,829 + HER17_RS18275 0.12 +0.1 4,115,830 - HER17_RS18275 0.12 +0.4 4,115,830 - HER17_RS18275 0.12 +0.4 4,115,830 - HER17_RS18275 0.12 +0.3 4,115,830 - HER17_RS18275 0.12 +0.5 4,115,830 - HER17_RS18275 0.12 +0.6 4,115,830 - HER17_RS18275 0.12 -0.8 4,115,831 + HER17_RS18275 0.12 +2.2 4,115,831 + HER17_RS18275 0.12 -0.8 4,115,831 + HER17_RS18275 0.12 -0.5 4,115,831 + HER17_RS18275 0.12 -0.2 4,115,831 + HER17_RS18275 0.12 +0.7 4,115,831 + HER17_RS18275 0.12 +0.1 4,115,831 + HER17_RS18275 0.12 +0.9 4,115,831 + HER17_RS18275 0.12 -0.8 4,115,831 + HER17_RS18275 0.12 -0.0 4,115,831 + HER17_RS18275 0.12 +1.3 4,115,832 - HER17_RS18275 0.12 -0.5 4,115,832 - HER17_RS18275 0.12 -0.5 4,115,832 - HER17_RS18275 0.12 +0.1 4,115,832 - HER17_RS18275 0.12 -0.8 4,115,869 - HER17_RS18275 0.13 +0.7 4,115,869 - HER17_RS18275 0.13 +1.3 4,115,967 - HER17_RS18275 0.14 +0.4 4,115,967 - HER17_RS18275 0.14 -0.7 4,115,970 + HER17_RS18275 0.15 -0.0
Or see this region's nucleotide sequence