Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS13510

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
2,991,810	-		HER17_RS13505	0.42	+0.1
2,991,810	-		HER17_RS13505	0.42	-1.1
2,991,890	+		HER17_RS13505	0.47	-2.5
2,991,890	+		HER17_RS13505	0.47	+0.4
2,991,891	-		HER17_RS13505	0.47	-0.9
2,991,898	+		HER17_RS13505	0.48	-0.2
2,991,898	+		HER17_RS13505	0.48	-0.3
2,992,026	-		HER17_RS13505	0.56	-0.8
2,992,052	+		HER17_RS13505	0.58	-0.1
2,992,053	-		HER17_RS13505	0.58	+0.1
2,992,053	-		HER17_RS13505	0.58	-1.8
2,992,323	+		HER17_RS13505	0.75	-0.9
2,992,324	-		HER17_RS13505	0.75	-1.6
2,992,324	-		HER17_RS13505	0.75	-1.1
2,992,328	+		HER17_RS13505	0.75	-0.9
2,992,328	+		HER17_RS13505	0.75	-1.0
2,992,329	-		HER17_RS13505	0.75	+0.2
2,992,329	-		HER17_RS13505	0.75	+0.7
2,992,329	-		HER17_RS13505	0.75	-0.8
2,992,329	-		HER17_RS13505	0.75	+0.2
2,992,329	-		HER17_RS13505	0.75	-0.2
2,992,329	-		HER17_RS13505	0.75	-0.8
2,992,329	-		HER17_RS13505	0.75	-1.5
2,992,330	+		HER17_RS13505	0.76	-0.4
2,992,331	-		HER17_RS13505	0.76	+0.3
2,992,444	+		HER17_RS13505	0.83	+0.7
2,992,444	+		HER17_RS13505	0.83	-1.4
2,992,444	+		HER17_RS13505	0.83	-0.3
2,992,444	+		HER17_RS13505	0.83	-0.2
2,992,445	-		HER17_RS13505	0.83	+2.0
2,992,445	-		HER17_RS13505	0.83	-0.3
2,992,445	-		HER17_RS13505	0.83	+0.3
2,992,471	+		HER17_RS13505	0.85	-0.7
2,992,471	+		HER17_RS13505	0.85	-0.6
2,992,472	-		HER17_RS13505	0.85	-0.2
2,992,486	-		HER17_RS13505	0.86	-0.6
2,992,502	+		HER17_RS13505	0.87	+0.3
2,992,503	-		HER17_RS13505	0.87	+1.2
2,992,503	-		HER17_RS13505	0.87	+0.2
2,992,503	-		HER17_RS13505	0.87	+0.3
2,992,531	+		HER17_RS13505	0.89	-0.4
2,992,531	+		HER17_RS13505	0.89	-0.3
2,992,531	+		HER17_RS13505	0.89	-0.1
2,992,532	-		HER17_RS13505	0.89	+0.0
2,992,532	-		HER17_RS13505	0.89	+0.5
2,992,576	+				+0.2
2,992,577	-				-1.4
2,992,577	-				-0.2
2,992,709	+				-0.0
2,992,709	+				+0.7
2,992,709	+				-0.0
2,992,709	+				-0.0
2,992,709	+				+0.0
2,992,710	-				+0.6
2,992,710	-				-0.2
2,992,737	-				+0.6
2,992,837	+				+0.8
2,992,837	+				+0.6
2,992,838	-				+1.0
2,992,918	-				-0.3
2,992,918	-				-0.8
2,992,942	+		HER17_RS13510	0.11	-0.9
2,992,943	-		HER17_RS13510	0.11	-0.0
2,992,982	+		HER17_RS13510	0.13	+0.8
2,992,982	+		HER17_RS13510	0.13	+0.1
2,992,982	+		HER17_RS13510	0.13	-1.2
2,992,982	+		HER17_RS13510	0.13	+0.6
2,992,982	+		HER17_RS13510	0.13	-0.0
2,992,982	+		HER17_RS13510	0.13	+0.1
2,992,983	-		HER17_RS13510	0.13	+0.0
2,992,983	-		HER17_RS13510	0.13	+1.1
2,992,983	-		HER17_RS13510	0.13	-0.2
2,992,983	-		HER17_RS13510	0.13	+0.0
2,992,983	-		HER17_RS13510	0.13	+1.0
2,992,983	-		HER17_RS13510	0.13	+0.0
2,992,983	-		HER17_RS13510	0.13	+0.1
2,992,983	-		HER17_RS13510	0.13	-0.2
2,992,983	-		HER17_RS13510	0.13	+0.1
2,993,005	-		HER17_RS13510	0.14	+0.5
2,993,005	-		HER17_RS13510	0.14	-0.2
2,993,005	-		HER17_RS13510	0.14	-1.0
2,993,007	+		HER17_RS13510	0.14	+0.4
2,993,025	+		HER17_RS13510	0.15	-0.0
2,993,026	-		HER17_RS13510	0.15	-0.2
2,993,026	-		HER17_RS13510	0.15	+0.4
2,993,038	-		HER17_RS13510	0.16	-0.2
2,993,148	+		HER17_RS13510	0.22	+0.4
2,993,388	+		HER17_RS13510	0.34	+1.5
2,993,388	+		HER17_RS13510	0.34	-0.0
2,993,609	-		HER17_RS13510	0.46	-0.7
2,993,646	+		HER17_RS13510	0.48	-0.1
2,993,706	+		HER17_RS13510	0.51	+0.1
2,993,707	-		HER17_RS13510	0.51	+0.9
2,993,802	+		HER17_RS13510	0.56	-1.0
2,993,802	+		HER17_RS13510	0.56	-0.9
2,993,803	-		HER17_RS13510	0.56	+0.6
2,993,803	-		HER17_RS13510	0.56	+0.1
2,993,803	-		HER17_RS13510	0.56	-0.0
2,993,803	-		HER17_RS13510	0.56	+0.7
2,993,803	-		HER17_RS13510	0.56	+1.2
2,993,804	+		HER17_RS13510	0.56	-0.9
2,993,805	-		HER17_RS13510	0.56	+0.7
2,993,805	-		HER17_RS13510	0.56	+0.5
2,993,805	-		HER17_RS13510	0.56	-0.3
2,993,965	-		HER17_RS13510	0.65	+0.6
2,994,196	+		HER17_RS13510	0.77	+2.4
2,994,197	-		HER17_RS13510	0.77	+0.5
2,994,358	+		HER17_RS13510	0.85	+0.5
2,994,358	+		HER17_RS13510	0.85	-0.4
2,994,359	-		HER17_RS13510	0.86	+1.1
2,994,359	-		HER17_RS13510	0.86	-0.7
2,994,359	-		HER17_RS13510	0.86	-2.9
2,994,359	-		HER17_RS13510	0.86	-0.1
2,994,364	-		HER17_RS13510	0.86	-0.7
2,994,364	-		HER17_RS13510	0.86	-0.6
2,994,433	-		HER17_RS13510	0.89	+0.3
2,994,533	+				+1.5
2,994,611	+				-0.9
2,994,611	+				-1.0
2,994,611	+				-0.9
2,994,650	+				+0.7
2,994,651	-				-1.1
2,994,652	+				+0.5
2,994,652	+				+0.2
2,994,653	-				+0.3
2,994,694	-				+0.0
2,994,712	+				-0.1
2,994,712	+				+0.4
2,994,713	-				-0.4
2,994,713	-				+0.6
2,994,713	-				+0.4
2,994,726	+				+1.2
2,994,733	+				-0.5
2,994,733	+				-0.3
2,994,734	-				+0.0
2,994,734	-				+0.0
2,994,777	-				+1.2
2,994,777	-				+0.6
2,994,819	+				+0.1
2,994,819	+				+0.2
2,994,955	+				+0.7
2,994,955	+				+0.3
2,994,955	+				-0.0
2,994,955	+				+0.3
2,994,955	+				-0.2
2,994,955	+				-0.1
2,994,955	+				+0.5
2,994,956	-				-1.6
2,994,956	-				-0.5
2,994,956	-				+0.1
2,994,985	-				+0.6
2,994,985	-				+0.1
2,994,988	+				-0.3
2,994,988	+				-0.2
2,994,988	+				+1.0
2,994,988	+				-0.2
2,994,989	-				-0.4
2,994,989	-				-0.7
2,994,989	-				+0.3
2,994,991	+				+0.0
2,995,000	-				+0.3
2,995,000	-				+0.2
2,995,060	+				+0.1
2,995,061	-				-1.1
2,995,061	-				+0.5
2,995,068	-				+0.2
2,995,068	-				+0.0
2,995,068	-				-1.2
2,995,071	-				+0.7
2,995,125	-				-0.2
2,995,135	+				-0.3
2,995,296	+		HER17_RS13515	0.15	-0.1
2,995,504	+		HER17_RS13515	0.32	+0.4
2,995,504	+		HER17_RS13515	0.32	-0.6
2,995,505	-		HER17_RS13515	0.32	+0.5
2,995,505	-		HER17_RS13515	0.32	-2.1