Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS11575

Experiment: M9+glycerol

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	M9+glycerol
2,571,047	+		HER17_RS11570	0.55	-1.6
2,571,048	-		HER17_RS11570	0.55	-1.8
2,571,050	-		HER17_RS11570	0.55	+0.4
2,571,170	+		HER17_RS11570	0.62	+2.1
2,571,170	+		HER17_RS11570	0.62	+0.1
2,571,171	-		HER17_RS11570	0.62	-1.0
2,571,287	+		HER17_RS11570	0.68	+0.0
2,571,288	-		HER17_RS11570	0.69	-0.2
2,571,343	-		HER17_RS11570	0.72	+0.3
2,571,367	-		HER17_RS11570	0.73	-1.6
2,571,367	-		HER17_RS11570	0.73	-0.6
2,571,367	-		HER17_RS11570	0.73	+0.8
2,571,458	-		HER17_RS11570	0.78	-0.0
2,571,488	+		HER17_RS11570	0.80	-0.3
2,571,590	+		HER17_RS11570	0.86	-0.2
2,571,644	+		HER17_RS11570	0.89	+0.6
2,571,655	+		HER17_RS11570	0.90	+0.4
2,571,659	+		HER17_RS11570	0.90	+0.9
2,571,659	+		HER17_RS11570	0.90	+0.8
2,571,660	-		HER17_RS11570	0.90	+0.2
2,571,736	-				-0.8
2,571,736	-				-0.7
2,571,736	-				+0.1
2,571,931	+				-0.1
2,571,931	+				+0.2
2,571,932	-				-0.6
2,571,974	+				+0.5
2,571,975	-				+0.3
2,571,975	-				+0.7
2,572,000	+				+0.5
2,572,001	-				+0.8
2,572,008	+				+0.0
2,572,009	-				-0.4
2,572,009	-				+0.4
2,572,017	-				+0.5
2,572,029	+				+0.4
2,572,122	+				-0.4
2,572,174	+				+0.5
2,572,174	+				+0.1
2,572,265	-		HER17_RS11575	0.12	+0.0
2,572,272	-		HER17_RS11575	0.13	+0.4
2,572,272	-		HER17_RS11575	0.13	-0.1
2,572,343	+		HER17_RS11575	0.16	-0.0
2,572,343	+		HER17_RS11575	0.16	+0.1
2,572,344	-		HER17_RS11575	0.16	+0.7
2,572,344	-		HER17_RS11575	0.16	+0.4
2,572,344	-		HER17_RS11575	0.16	-2.0
2,572,344	-		HER17_RS11575	0.16	+0.2
2,572,348	-		HER17_RS11575	0.16	-2.0
2,572,361	+		HER17_RS11575	0.17	-0.2
2,572,361	+		HER17_RS11575	0.17	-0.6
2,572,362	-		HER17_RS11575	0.17	+0.0
2,572,362	-		HER17_RS11575	0.17	-0.6
2,572,386	-		HER17_RS11575	0.18	+0.8
2,572,449	-		HER17_RS11575	0.21	+0.0
2,572,449	-		HER17_RS11575	0.21	+1.1
2,572,466	+		HER17_RS11575	0.22	-0.6
2,572,467	-		HER17_RS11575	0.22	-0.5
2,572,631	+		HER17_RS11575	0.29	-0.7
2,572,631	+		HER17_RS11575	0.29	-0.2
2,572,632	-		HER17_RS11575	0.29	+2.4
2,572,717	+		HER17_RS11575	0.33	-0.8
2,572,718	-		HER17_RS11575	0.33	+0.4
2,572,718	-		HER17_RS11575	0.33	-0.1
2,572,718	-		HER17_RS11575	0.33	-0.5
2,572,745	-		HER17_RS11575	0.34	+0.6
2,572,850	-		HER17_RS11575	0.39	-0.4
2,572,850	-		HER17_RS11575	0.39	-0.6
2,572,857	+		HER17_RS11575	0.40	-0.3
2,572,932	-		HER17_RS11575	0.43	+0.7
2,572,932	-		HER17_RS11575	0.43	+0.8
2,573,123	+		HER17_RS11575	0.52	-0.1
2,573,123	+		HER17_RS11575	0.52	+0.8
2,573,123	+		HER17_RS11575	0.52	+1.1
2,573,165	+		HER17_RS11575	0.54	-0.1
2,573,165	+		HER17_RS11575	0.54	+0.3
2,573,193	-		HER17_RS11575	0.55	+1.5
2,573,321	+		HER17_RS11575	0.61	+0.3
2,573,321	+		HER17_RS11575	0.61	+0.3
2,573,331	+		HER17_RS11575	0.61	-1.2
2,573,331	+		HER17_RS11575	0.61	+0.5
2,573,331	+		HER17_RS11575	0.61	+0.4
2,573,332	-		HER17_RS11575	0.61	+1.3
2,573,332	-		HER17_RS11575	0.61	-0.4
2,573,344	+		HER17_RS11575	0.62	-0.1
2,573,344	+		HER17_RS11575	0.62	+0.1
2,573,345	-		HER17_RS11575	0.62	-0.2
2,573,345	-		HER17_RS11575	0.62	+0.1
2,573,345	-		HER17_RS11575	0.62	+0.0
2,573,345	-		HER17_RS11575	0.62	+0.5
2,573,348	+		HER17_RS11575	0.62	+0.5
2,573,349	-		HER17_RS11575	0.62	-0.1
2,573,349	-		HER17_RS11575	0.62	+0.1
2,573,418	+		HER17_RS11575	0.65	+0.5
2,573,418	+		HER17_RS11575	0.65	-0.1
2,573,510	+		HER17_RS11575	0.70	-0.0
2,573,517	-		HER17_RS11575	0.70	+0.6
2,573,517	-		HER17_RS11575	0.70	-0.4
2,573,545	+		HER17_RS11575	0.71	-1.0
2,573,546	-		HER17_RS11575	0.71	+0.1
2,573,546	-		HER17_RS11575	0.71	+0.2
2,573,707	-		HER17_RS11575	0.79	-1.1
2,573,729	+		HER17_RS11575	0.80	+0.2
2,573,729	+		HER17_RS11575	0.80	-0.4
2,573,729	+		HER17_RS11575	0.80	-0.8
2,573,730	-		HER17_RS11575	0.80	-2.7
2,573,730	-		HER17_RS11575	0.80	-0.3
2,573,810	+		HER17_RS11575	0.83	-1.5
2,573,810	+		HER17_RS11575	0.83	+0.2
2,573,815	-		HER17_RS11575	0.84	-0.2
2,573,822	+		HER17_RS11575	0.84	-2.6
2,573,823	-		HER17_RS11575	0.84	+0.4
2,573,842	+		HER17_RS11575	0.85	-0.5
2,573,843	-		HER17_RS11575	0.85	+1.0
2,573,904	+		HER17_RS11575	0.88	+0.4
2,573,930	+		HER17_RS11575	0.89	+1.0
2,573,931	-		HER17_RS11575	0.89	+0.3
2,574,051	-				+0.6
2,574,090	+				+0.1
2,574,093	+				+0.8
2,574,093	+				-0.0
2,574,094	-				+0.8
2,574,101	+				+0.3
2,574,191	-				+0.5
2,574,239	+				-0.0
2,574,251	+				-0.3
2,574,311	+				+0.3
2,574,311	+				-0.2
2,574,312	-				+0.8
2,574,325	-				+0.1
2,574,351	+				+1.0
2,574,371	-				-0.3
2,574,373	+				+1.1
2,574,373	+				-0.6
2,574,396	+				+0.1
2,574,396	+				-0.0
2,574,397	-				-1.2
2,574,397	-				-0.0
2,574,404	+				+0.8
2,574,405	-				+1.3
2,574,484	+				+0.3
2,574,486	+				+0.1
2,574,487	-				-1.2
2,574,519	+				-0.8
2,574,541	+				-0.9
2,574,542	-				-0.6
2,574,542	-				-0.7
2,574,544	-				+0.1
2,574,637	+		HER17_RS11580	0.29	+0.3
2,574,638	-		HER17_RS11580	0.30	+0.2
2,574,649	-		HER17_RS11580	0.34	-0.4
2,574,680	+		HER17_RS11580	0.46	-1.2
2,574,752	+		HER17_RS11580	0.74	-0.1
2,574,772	-		HER17_RS11580	0.82	+0.4
2,574,811	-				+0.0
2,574,818	+				+0.1
2,574,818	+				+1.1
2,574,818	+				-0.3
2,574,818	+				+0.8
2,574,818	+				+0.6
2,574,818	+				-1.0
2,574,818	+				-0.3
2,574,818	+				+0.2
2,574,818	+				+0.4
2,574,818	+				-0.6
2,574,818	+				+0.6
2,574,819	-				+0.2
2,574,819	-				-0.1
2,574,819	-				-0.3
2,574,819	-				+0.8
2,574,819	-				-0.0
2,574,819	-				-0.1
2,574,819	-				-0.4
2,574,819	-				-0.9
2,574,819	-				-0.4
2,574,819	-				+0.8
2,574,846	+				+0.3
2,574,866	+				+0.3
2,574,875	+				-0.2
2,574,898	+				-0.4
2,574,913	+				-0.6
2,574,914	-				-0.1
2,574,974	+				+0.1
2,574,982	+				+0.4
2,574,986	-				+0.2
2,574,998	+				-0.5
2,574,999	-				+0.1
2,574,999	-				-0.8
2,575,003	-				+0.2
2,575,034	+				-1.7
2,575,034	+				+0.3
2,575,034	+				+0.3
2,575,034	+				-0.5
2,575,035	-				-0.5
2,575,035	-				+0.9
2,575,046	-				-0.5
2,575,109	+				+0.2
2,575,109	+				-0.4
2,575,109	+				+0.2
2,575,128	+				-0.3
2,575,128	+				+0.0
2,575,128	+				-0.1
2,575,128	+				-0.6
2,575,128	+				-0.8
2,575,128	+				+0.6
2,575,129	-				+1.2
2,575,129	-				-1.0
2,575,129	-				-0.4
2,575,129	-				+0.6
2,575,129	-				+0.8
2,575,141	+				+0.1
2,575,141	+				-0.2
2,575,141	+				-0.2
2,575,142	-				-0.6
2,575,142	-				-0.6
2,575,142	-				-1.0
2,575,142	-				+0.2
2,575,142	-				+0.6
2,575,142	-				+0.9
2,575,142	-				+1.3