Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS03490

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS03485 and HER17_RS03490 are separated by 163 nucleotidesHER17_RS03490 and HER17_RS03495 overlap by 4 nucleotidesHER17_RS03495 and HER17_RS03500 overlap by 4 nucleotides HER17_RS03485: HER17_RS03485 - metallophosphoesterase, at 791,764 to 793,587 _RS03485 HER17_RS03490: HER17_RS03490 - glucosamine kinase, at 793,751 to 794,659 _RS03490 HER17_RS03495: HER17_RS03495 - glucosamine kinase, at 794,656 to 795,207 _RS03495 HER17_RS03500: HER17_RS03500 - ABC transporter substrate-binding protein, at 795,204 to 796,511 _RS03500 Position (kb) 793 794 795Strain fitness (log2 ratio) -3 -2 -1 0 1at 792.842 kb on + strand, within HER17_RS03485at 792.842 kb on + strand, within HER17_RS03485at 792.897 kb on - strand, within HER17_RS03485at 793.005 kb on - strand, within HER17_RS03485at 793.143 kb on + strand, within HER17_RS03485at 793.144 kb on - strand, within HER17_RS03485at 793.197 kb on - strand, within HER17_RS03485at 793.231 kb on - strand, within HER17_RS03485at 793.274 kb on + strand, within HER17_RS03485at 793.275 kb on - strand, within HER17_RS03485at 793.325 kb on + strand, within HER17_RS03485at 793.372 kb on - strand, within HER17_RS03485at 793.372 kb on - strand, within HER17_RS03485at 793.424 kb on + strandat 793.437 kb on + strandat 793.437 kb on + strandat 793.437 kb on + strandat 793.471 kb on - strandat 793.534 kb on - strandat 793.534 kb on - strandat 793.591 kb on + strandat 793.591 kb on + strandat 793.591 kb on + strandat 793.592 kb on - strandat 793.592 kb on - strandat 793.637 kb on - strandat 793.637 kb on - strandat 793.637 kb on - strandat 793.637 kb on - strandat 793.637 kb on - strandat 793.639 kb on - strandat 793.639 kb on - strandat 793.639 kb on - strandat 793.639 kb on - strandat 793.639 kb on - strandat 793.641 kb on - strandat 793.641 kb on - strandat 793.641 kb on - strandat 793.650 kb on - strandat 793.650 kb on - strandat 793.650 kb on - strandat 793.752 kb on + strandat 793.756 kb on + strandat 793.761 kb on + strandat 793.761 kb on + strandat 793.761 kb on + strandat 793.763 kb on + strandat 793.763 kb on + strandat 793.770 kb on + strandat 793.785 kb on - strandat 793.864 kb on + strand, within HER17_RS03490at 793.864 kb on + strand, within HER17_RS03490at 793.865 kb on - strand, within HER17_RS03490at 793.865 kb on - strand, within HER17_RS03490at 793.865 kb on - strand, within HER17_RS03490at 793.865 kb on - strand, within HER17_RS03490at 793.868 kb on + strand, within HER17_RS03490at 793.868 kb on + strand, within HER17_RS03490at 793.868 kb on + strand, within HER17_RS03490at 793.868 kb on + strand, within HER17_RS03490at 793.868 kb on + strand, within HER17_RS03490at 793.868 kb on + strand, within HER17_RS03490at 793.869 kb on - strand, within HER17_RS03490at 793.869 kb on - strand, within HER17_RS03490at 793.869 kb on - strand, within HER17_RS03490at 793.906 kb on + strand, within HER17_RS03490at 793.906 kb on + strand, within HER17_RS03490at 793.907 kb on - strand, within HER17_RS03490at 793.969 kb on - strand, within HER17_RS03490at 794.025 kb on + strand, within HER17_RS03490at 794.026 kb on - strand, within HER17_RS03490at 794.026 kb on - strand, within HER17_RS03490at 794.169 kb on + strand, within HER17_RS03490at 794.169 kb on + strand, within HER17_RS03490at 794.169 kb on + strand, within HER17_RS03490at 794.170 kb on - strand, within HER17_RS03490at 794.170 kb on - strand, within HER17_RS03490at 794.170 kb on - strand, within HER17_RS03490at 794.170 kb on - strand, within HER17_RS03490at 794.170 kb on - strand, within HER17_RS03490at 794.173 kb on + strand, within HER17_RS03490at 794.173 kb on + strand, within HER17_RS03490at 794.174 kb on - strand, within HER17_RS03490at 794.174 kb on - strand, within HER17_RS03490at 794.174 kb on - strand, within HER17_RS03490at 794.174 kb on - strand, within HER17_RS03490at 794.364 kb on - strand, within HER17_RS03490at 794.377 kb on - strand, within HER17_RS03490at 794.406 kb on + strand, within HER17_RS03490at 794.459 kb on + strand, within HER17_RS03490at 794.460 kb on - strand, within HER17_RS03490at 794.543 kb on + strand, within HER17_RS03490at 794.544 kb on - strand, within HER17_RS03490at 794.598 kb on + strandat 794.599 kb on - strandat 794.599 kb on - strandat 794.620 kb on + strandat 794.620 kb on + strandat 794.621 kb on - strandat 794.621 kb on - strandat 794.621 kb on - strandat 794.634 kb on - strandat 794.684 kb on + strandat 794.685 kb on - strandat 794.850 kb on - strand, within HER17_RS03495at 795.104 kb on + strand, within HER17_RS03495at 795.286 kb on + strandat 795.286 kb on + strandat 795.287 kb on - strandat 795.317 kb on - strandat 795.394 kb on + strand, within HER17_RS03500at 795.394 kb on + strand, within HER17_RS03500at 795.394 kb on + strand, within HER17_RS03500at 795.395 kb on - strand, within HER17_RS03500at 795.395 kb on - strand, within HER17_RS03500at 795.452 kb on + strand, within HER17_RS03500at 795.452 kb on + strand, within HER17_RS03500at 795.453 kb on - strand, within HER17_RS03500at 795.453 kb on - strand, within HER17_RS03500at 795.453 kb on - strand, within HER17_RS03500at 795.626 kb on + strand, within HER17_RS03500at 795.626 kb on + strand, within HER17_RS03500at 795.626 kb on + strand, within HER17_RS03500at 795.627 kb on - strand, within HER17_RS03500

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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792,842 + HER17_RS03485 0.59 -0.4
792,842 + HER17_RS03485 0.59 -0.4
792,897 - HER17_RS03485 0.62 +0.5
793,005 - HER17_RS03485 0.68 +0.9
793,143 + HER17_RS03485 0.76 +0.5
793,144 - HER17_RS03485 0.76 -0.0
793,197 - HER17_RS03485 0.79 -0.4
793,231 - HER17_RS03485 0.80 -2.1
793,274 + HER17_RS03485 0.83 +0.2
793,275 - HER17_RS03485 0.83 +0.0
793,325 + HER17_RS03485 0.86 +0.6
793,372 - HER17_RS03485 0.88 -0.5
793,372 - HER17_RS03485 0.88 +0.1
793,424 + +0.6
793,437 + -0.2
793,437 + +0.3
793,437 + +0.5
793,471 - -0.1
793,534 - -0.2
793,534 - -0.2
793,591 + -0.3
793,591 + +0.3
793,591 + -0.6
793,592 - -0.4
793,592 - -0.0
793,637 - -0.2
793,637 - -1.1
793,637 - +0.2
793,637 - -0.0
793,637 - -1.4
793,639 - +1.0
793,639 - +0.5
793,639 - +0.1
793,639 - +0.3
793,639 - -0.1
793,641 - -0.3
793,641 - +0.1
793,641 - -0.1
793,650 - +0.6
793,650 - +0.1
793,650 - -0.0
793,752 + -0.0
793,756 + +0.6
793,761 + -0.1
793,761 + +0.4
793,761 + -0.2
793,763 + +1.5
793,763 + +0.2
793,770 + -0.0
793,785 - +0.6
793,864 + HER17_RS03490 0.12 -0.1
793,864 + HER17_RS03490 0.12 -0.3
793,865 - HER17_RS03490 0.13 -0.1
793,865 - HER17_RS03490 0.13 +0.1
793,865 - HER17_RS03490 0.13 +0.3
793,865 - HER17_RS03490 0.13 -1.0
793,868 + HER17_RS03490 0.13 -0.7
793,868 + HER17_RS03490 0.13 +0.9
793,868 + HER17_RS03490 0.13 +0.9
793,868 + HER17_RS03490 0.13 +0.1
793,868 + HER17_RS03490 0.13 -0.6
793,868 + HER17_RS03490 0.13 +0.2
793,869 - HER17_RS03490 0.13 +0.2
793,869 - HER17_RS03490 0.13 -1.3
793,869 - HER17_RS03490 0.13 -0.2
793,906 + HER17_RS03490 0.17 -0.5
793,906 + HER17_RS03490 0.17 -0.6
793,907 - HER17_RS03490 0.17 +1.1
793,969 - HER17_RS03490 0.24 +0.3
794,025 + HER17_RS03490 0.30 -0.6
794,026 - HER17_RS03490 0.30 -1.5
794,026 - HER17_RS03490 0.30 +0.2
794,169 + HER17_RS03490 0.46 +0.1
794,169 + HER17_RS03490 0.46 +0.4
794,169 + HER17_RS03490 0.46 +0.8
794,170 - HER17_RS03490 0.46 -0.2
794,170 - HER17_RS03490 0.46 -0.4
794,170 - HER17_RS03490 0.46 +0.2
794,170 - HER17_RS03490 0.46 +0.1
794,170 - HER17_RS03490 0.46 +0.5
794,173 + HER17_RS03490 0.46 -0.4
794,173 + HER17_RS03490 0.46 +0.1
794,174 - HER17_RS03490 0.47 +0.9
794,174 - HER17_RS03490 0.47 +0.6
794,174 - HER17_RS03490 0.47 -0.1
794,174 - HER17_RS03490 0.47 +0.0
794,364 - HER17_RS03490 0.67 +0.6
794,377 - HER17_RS03490 0.69 -0.1
794,406 + HER17_RS03490 0.72 -0.1
794,459 + HER17_RS03490 0.78 +0.4
794,460 - HER17_RS03490 0.78 -0.2
794,543 + HER17_RS03490 0.87 -0.2
794,544 - HER17_RS03490 0.87 -0.5
794,598 + +0.3
794,599 - -0.3
794,599 - +0.5
794,620 + -0.2
794,620 + -0.2
794,621 - +0.8
794,621 - -0.6
794,621 - +0.5
794,634 - -0.5
794,684 + +0.6
794,685 - -0.0
794,850 - HER17_RS03495 0.35 -0.1
795,104 + HER17_RS03495 0.81 -0.1
795,286 + -0.3
795,286 + -0.7
795,287 - +0.5
795,317 - +1.2
795,394 + HER17_RS03500 0.15 -0.9
795,394 + HER17_RS03500 0.15 -0.2
795,394 + HER17_RS03500 0.15 +0.1
795,395 - HER17_RS03500 0.15 -2.1
795,395 - HER17_RS03500 0.15 +0.1
795,452 + HER17_RS03500 0.19 -1.2
795,452 + HER17_RS03500 0.19 -3.0
795,453 - HER17_RS03500 0.19 -0.9
795,453 - HER17_RS03500 0.19 -0.5
795,453 - HER17_RS03500 0.19 +0.7
795,626 + HER17_RS03500 0.32 -1.0
795,626 + HER17_RS03500 0.32 +1.3
795,626 + HER17_RS03500 0.32 +0.0
795,627 - HER17_RS03500 0.32 -0.3

Or see this region's nucleotide sequence