Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS03390

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS03380 and HER17_RS03385 are separated by 22 nucleotidesHER17_RS03385 and HER17_RS03390 are separated by 318 nucleotidesHER17_RS03390 and HER17_RS03395 are separated by 56 nucleotides HER17_RS03380: HER17_RS03380 - PTS sugar transporter subunit IIB, at 769,824 to 770,111 _RS03380 HER17_RS03385: HER17_RS03385 - PTS sugar transporter subunit IIA, at 770,134 to 770,577 _RS03385 HER17_RS03390: HER17_RS03390 - LacI family DNA-binding transcriptional regulator, at 770,896 to 772,086 _RS03390 HER17_RS03395: HER17_RS03395 - ABC transporter substrate-binding protein, at 772,143 to 773,204 _RS03395 Position (kb) 770 771 772 773Strain fitness (log2 ratio) -2 -1 0 1 2at 769.956 kb on - strand, within HER17_RS03380at 769.995 kb on + strand, within HER17_RS03380at 769.996 kb on - strand, within HER17_RS03380at 769.996 kb on - strand, within HER17_RS03380at 770.048 kb on + strand, within HER17_RS03380at 770.076 kb on - strand, within HER17_RS03380at 770.094 kb on + strandat 770.102 kb on + strandat 770.135 kb on + strandat 770.135 kb on + strandat 770.135 kb on + strandat 770.136 kb on - strandat 770.148 kb on + strandat 770.167 kb on + strandat 770.167 kb on + strandat 770.167 kb on + strandat 770.167 kb on + strandat 770.167 kb on + strandat 770.167 kb on + strandat 770.168 kb on - strandat 770.168 kb on - strandat 770.168 kb on - strandat 770.168 kb on - strandat 770.185 kb on + strand, within HER17_RS03385at 770.235 kb on + strand, within HER17_RS03385at 770.236 kb on - strand, within HER17_RS03385at 770.236 kb on - strand, within HER17_RS03385at 770.238 kb on + strand, within HER17_RS03385at 770.250 kb on + strand, within HER17_RS03385at 770.250 kb on + strand, within HER17_RS03385at 770.281 kb on + strand, within HER17_RS03385at 770.281 kb on + strand, within HER17_RS03385at 770.282 kb on - strand, within HER17_RS03385at 770.282 kb on - strand, within HER17_RS03385at 770.411 kb on + strand, within HER17_RS03385at 770.411 kb on + strand, within HER17_RS03385at 770.411 kb on + strand, within HER17_RS03385at 770.411 kb on + strand, within HER17_RS03385at 770.411 kb on + strand, within HER17_RS03385at 770.411 kb on + strand, within HER17_RS03385at 770.411 kb on + strand, within HER17_RS03385at 770.411 kb on + strand, within HER17_RS03385at 770.412 kb on - strand, within HER17_RS03385at 770.412 kb on - strand, within HER17_RS03385at 770.412 kb on - strand, within HER17_RS03385at 770.412 kb on - strand, within HER17_RS03385at 770.412 kb on - strand, within HER17_RS03385at 770.412 kb on - strand, within HER17_RS03385at 770.412 kb on - strand, within HER17_RS03385at 770.412 kb on - strand, within HER17_RS03385at 770.412 kb on - strand, within HER17_RS03385at 770.414 kb on + strand, within HER17_RS03385at 770.414 kb on + strand, within HER17_RS03385at 770.414 kb on + strand, within HER17_RS03385at 770.415 kb on - strand, within HER17_RS03385at 770.441 kb on + strand, within HER17_RS03385at 770.442 kb on - strand, within HER17_RS03385at 770.442 kb on - strand, within HER17_RS03385at 770.456 kb on + strand, within HER17_RS03385at 770.456 kb on + strand, within HER17_RS03385at 770.456 kb on + strand, within HER17_RS03385at 770.457 kb on - strand, within HER17_RS03385at 770.457 kb on - strand, within HER17_RS03385at 770.457 kb on - strand, within HER17_RS03385at 770.493 kb on + strand, within HER17_RS03385at 770.493 kb on + strand, within HER17_RS03385at 770.579 kb on - strandat 770.611 kb on + strandat 770.612 kb on - strandat 770.695 kb on + strandat 770.695 kb on + strandat 770.695 kb on + strandat 770.714 kb on - strandat 770.714 kb on - strandat 770.714 kb on - strandat 770.744 kb on + strandat 770.744 kb on + strandat 770.745 kb on - strandat 770.745 kb on - strandat 770.745 kb on - strandat 770.745 kb on - strandat 770.745 kb on - strandat 770.745 kb on - strandat 770.838 kb on - strandat 770.838 kb on - strandat 770.901 kb on + strandat 770.902 kb on - strandat 770.902 kb on - strandat 770.930 kb on + strandat 770.930 kb on + strandat 770.957 kb on + strandat 771.108 kb on - strand, within HER17_RS03390at 771.229 kb on + strand, within HER17_RS03390at 771.230 kb on - strand, within HER17_RS03390at 771.230 kb on - strand, within HER17_RS03390at 771.233 kb on + strand, within HER17_RS03390at 771.234 kb on - strand, within HER17_RS03390at 771.234 kb on - strand, within HER17_RS03390at 771.403 kb on - strand, within HER17_RS03390at 771.561 kb on + strand, within HER17_RS03390at 771.612 kb on - strand, within HER17_RS03390at 771.637 kb on + strand, within HER17_RS03390at 771.637 kb on + strand, within HER17_RS03390at 771.638 kb on - strand, within HER17_RS03390at 771.638 kb on - strand, within HER17_RS03390at 771.638 kb on - strand, within HER17_RS03390at 771.639 kb on + strand, within HER17_RS03390at 771.640 kb on - strand, within HER17_RS03390at 771.651 kb on + strand, within HER17_RS03390at 771.651 kb on + strand, within HER17_RS03390at 771.712 kb on + strand, within HER17_RS03390at 771.736 kb on - strand, within HER17_RS03390at 771.736 kb on - strand, within HER17_RS03390at 771.772 kb on + strand, within HER17_RS03390at 771.791 kb on + strand, within HER17_RS03390at 771.792 kb on - strand, within HER17_RS03390at 771.820 kb on - strand, within HER17_RS03390at 771.820 kb on - strand, within HER17_RS03390at 771.825 kb on + strand, within HER17_RS03390at 771.826 kb on - strand, within HER17_RS03390at 772.084 kb on + strandat 772.085 kb on - strandat 772.120 kb on + strandat 772.121 kb on - strandat 772.121 kb on - strandat 772.144 kb on + strandat 772.144 kb on + strandat 772.145 kb on - strandat 772.145 kb on - strandat 772.166 kb on + strandat 772.167 kb on - strandat 772.167 kb on - strandat 772.417 kb on + strand, within HER17_RS03395at 772.511 kb on + strand, within HER17_RS03395at 772.511 kb on + strand, within HER17_RS03395at 772.512 kb on - strand, within HER17_RS03395at 772.520 kb on + strand, within HER17_RS03395at 772.527 kb on - strand, within HER17_RS03395at 772.527 kb on - strand, within HER17_RS03395at 772.527 kb on - strand, within HER17_RS03395at 772.640 kb on + strand, within HER17_RS03395at 772.654 kb on + strand, within HER17_RS03395at 772.654 kb on + strand, within HER17_RS03395at 772.655 kb on - strand, within HER17_RS03395at 772.655 kb on - strand, within HER17_RS03395at 772.655 kb on - strand, within HER17_RS03395at 772.661 kb on + strand, within HER17_RS03395at 772.662 kb on - strand, within HER17_RS03395at 772.752 kb on + strand, within HER17_RS03395at 772.752 kb on + strand, within HER17_RS03395at 772.753 kb on - strand, within HER17_RS03395at 772.784 kb on + strand, within HER17_RS03395at 772.784 kb on + strand, within HER17_RS03395at 772.785 kb on - strand, within HER17_RS03395at 772.795 kb on + strand, within HER17_RS03395at 772.795 kb on + strand, within HER17_RS03395at 772.795 kb on + strand, within HER17_RS03395at 772.795 kb on + strand, within HER17_RS03395at 772.796 kb on - strand, within HER17_RS03395at 772.808 kb on + strand, within HER17_RS03395at 772.809 kb on - strand, within HER17_RS03395at 772.809 kb on - strand, within HER17_RS03395at 772.830 kb on + strand, within HER17_RS03395at 772.831 kb on - strand, within HER17_RS03395at 772.950 kb on + strand, within HER17_RS03395at 772.951 kb on - strand, within HER17_RS03395at 772.951 kb on - strand, within HER17_RS03395at 772.954 kb on + strand, within HER17_RS03395

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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769,956 - HER17_RS03380 0.46 -1.4
769,995 + HER17_RS03380 0.59 -0.1
769,996 - HER17_RS03380 0.60 -0.0
769,996 - HER17_RS03380 0.60 -0.7
770,048 + HER17_RS03380 0.78 +0.4
770,076 - HER17_RS03380 0.88 +0.6
770,094 + -1.0
770,102 + -0.4
770,135 + -0.5
770,135 + -0.9
770,135 + +0.2
770,136 - +0.4
770,148 + +1.3
770,167 + +0.7
770,167 + +0.4
770,167 + +1.9
770,167 + +0.6
770,167 + -0.4
770,167 + +0.2
770,168 - -0.4
770,168 - -0.3
770,168 - +0.6
770,168 - -0.2
770,185 + HER17_RS03385 0.11 -0.4
770,235 + HER17_RS03385 0.23 +0.5
770,236 - HER17_RS03385 0.23 -0.1
770,236 - HER17_RS03385 0.23 +0.0
770,238 + HER17_RS03385 0.23 +0.0
770,250 + HER17_RS03385 0.26 -0.9
770,250 + HER17_RS03385 0.26 -1.9
770,281 + HER17_RS03385 0.33 -1.3
770,281 + HER17_RS03385 0.33 -0.0
770,282 - HER17_RS03385 0.33 -0.0
770,282 - HER17_RS03385 0.33 +0.1
770,411 + HER17_RS03385 0.62 +0.2
770,411 + HER17_RS03385 0.62 +0.0
770,411 + HER17_RS03385 0.62 -0.3
770,411 + HER17_RS03385 0.62 +0.1
770,411 + HER17_RS03385 0.62 +0.5
770,411 + HER17_RS03385 0.62 +0.5
770,411 + HER17_RS03385 0.62 -0.7
770,411 + HER17_RS03385 0.62 -0.6
770,412 - HER17_RS03385 0.63 -1.0
770,412 - HER17_RS03385 0.63 +0.4
770,412 - HER17_RS03385 0.63 -0.6
770,412 - HER17_RS03385 0.63 +0.1
770,412 - HER17_RS03385 0.63 +0.2
770,412 - HER17_RS03385 0.63 +0.5
770,412 - HER17_RS03385 0.63 -1.9
770,412 - HER17_RS03385 0.63 +0.7
770,412 - HER17_RS03385 0.63 -0.0
770,414 + HER17_RS03385 0.63 +0.4
770,414 + HER17_RS03385 0.63 -0.9
770,414 + HER17_RS03385 0.63 -0.3
770,415 - HER17_RS03385 0.63 +0.1
770,441 + HER17_RS03385 0.69 +0.2
770,442 - HER17_RS03385 0.69 +0.2
770,442 - HER17_RS03385 0.69 +0.7
770,456 + HER17_RS03385 0.73 +0.4
770,456 + HER17_RS03385 0.73 +1.0
770,456 + HER17_RS03385 0.73 -0.2
770,457 - HER17_RS03385 0.73 -0.8
770,457 - HER17_RS03385 0.73 +0.0
770,457 - HER17_RS03385 0.73 +0.5
770,493 + HER17_RS03385 0.81 +0.3
770,493 + HER17_RS03385 0.81 -0.1
770,579 - -0.1
770,611 + +0.3
770,612 - +1.5
770,695 + +0.4
770,695 + +0.4
770,695 + +1.0
770,714 - -1.9
770,714 - -1.6
770,714 - -1.0
770,744 + -0.0
770,744 + -0.9
770,745 - +0.2
770,745 - -0.7
770,745 - +0.0
770,745 - -0.1
770,745 - +0.5
770,745 - -0.2
770,838 - -0.8
770,838 - -0.3
770,901 + +1.0
770,902 - +0.5
770,902 - +0.4
770,930 + +0.2
770,930 + +1.5
770,957 + +0.2
771,108 - HER17_RS03390 0.18 +0.2
771,229 + HER17_RS03390 0.28 -0.8
771,230 - HER17_RS03390 0.28 -0.1
771,230 - HER17_RS03390 0.28 -0.6
771,233 + HER17_RS03390 0.28 +0.0
771,234 - HER17_RS03390 0.28 -0.1
771,234 - HER17_RS03390 0.28 +0.6
771,403 - HER17_RS03390 0.43 +0.0
771,561 + HER17_RS03390 0.56 -0.3
771,612 - HER17_RS03390 0.60 -0.5
771,637 + HER17_RS03390 0.62 -0.8
771,637 + HER17_RS03390 0.62 +0.0
771,638 - HER17_RS03390 0.62 +0.6
771,638 - HER17_RS03390 0.62 -1.8
771,638 - HER17_RS03390 0.62 -0.5
771,639 + HER17_RS03390 0.62 -0.1
771,640 - HER17_RS03390 0.62 -1.1
771,651 + HER17_RS03390 0.63 +0.5
771,651 + HER17_RS03390 0.63 +0.2
771,712 + HER17_RS03390 0.69 -0.5
771,736 - HER17_RS03390 0.71 +0.8
771,736 - HER17_RS03390 0.71 +0.3
771,772 + HER17_RS03390 0.74 +0.3
771,791 + HER17_RS03390 0.75 +1.0
771,792 - HER17_RS03390 0.75 +0.3
771,820 - HER17_RS03390 0.78 +0.3
771,820 - HER17_RS03390 0.78 +0.9
771,825 + HER17_RS03390 0.78 +0.2
771,826 - HER17_RS03390 0.78 +0.6
772,084 + -1.0
772,085 - -0.8
772,120 + +0.5
772,121 - -1.3
772,121 - -0.7
772,144 + -0.4
772,144 + -0.5
772,145 - -0.1
772,145 - +0.1
772,166 + +0.5
772,167 - +0.2
772,167 - -0.0
772,417 + HER17_RS03395 0.26 -1.6
772,511 + HER17_RS03395 0.35 -0.3
772,511 + HER17_RS03395 0.35 -0.6
772,512 - HER17_RS03395 0.35 +0.1
772,520 + HER17_RS03395 0.35 -0.6
772,527 - HER17_RS03395 0.36 -0.0
772,527 - HER17_RS03395 0.36 +0.7
772,527 - HER17_RS03395 0.36 -0.2
772,640 + HER17_RS03395 0.47 -0.4
772,654 + HER17_RS03395 0.48 -2.6
772,654 + HER17_RS03395 0.48 -0.4
772,655 - HER17_RS03395 0.48 +0.2
772,655 - HER17_RS03395 0.48 +1.5
772,655 - HER17_RS03395 0.48 +0.3
772,661 + HER17_RS03395 0.49 -0.3
772,662 - HER17_RS03395 0.49 +0.7
772,752 + HER17_RS03395 0.57 +1.1
772,752 + HER17_RS03395 0.57 +1.2
772,753 - HER17_RS03395 0.57 +0.6
772,784 + HER17_RS03395 0.60 +0.1
772,784 + HER17_RS03395 0.60 +0.8
772,785 - HER17_RS03395 0.60 -0.7
772,795 + HER17_RS03395 0.61 +0.0
772,795 + HER17_RS03395 0.61 +0.5
772,795 + HER17_RS03395 0.61 +0.1
772,795 + HER17_RS03395 0.61 -0.4
772,796 - HER17_RS03395 0.61 -0.0
772,808 + HER17_RS03395 0.63 +0.6
772,809 - HER17_RS03395 0.63 -0.1
772,809 - HER17_RS03395 0.63 +1.1
772,830 + HER17_RS03395 0.65 +0.7
772,831 - HER17_RS03395 0.65 +0.4
772,950 + HER17_RS03395 0.76 -0.8
772,951 - HER17_RS03395 0.76 +0.2
772,951 - HER17_RS03395 0.76 -0.5
772,954 + HER17_RS03395 0.76 +0.8

Or see this region's nucleotide sequence