Experiment: M9+glycerol
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS02705 and HER17_RS02710 are separated by 218 nucleotides HER17_RS02710 and HER17_RS02715 are separated by 85 nucleotides
HER17_RS02705: HER17_RS02705 - arginine exporter ArgO, at 606,980 to 607,594
_RS02705
HER17_RS02710: HER17_RS02710 - oxidative stress defense protein, at 607,813 to 608,538
_RS02710
HER17_RS02715: HER17_RS02715 - LysR family transcriptional regulator ArgP, at 608,624 to 609,517
_RS02715
Position (kb) 607
608
609 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 606.853 kb on + strand at 606.853 kb on + strand at 606.854 kb on - strand at 606.854 kb on - strand at 606.892 kb on + strand at 606.892 kb on + strand at 606.893 kb on - strand at 606.893 kb on - strand at 606.893 kb on - strand at 606.908 kb on + strand at 606.923 kb on - strand at 606.927 kb on - strand at 606.927 kb on - strand at 606.927 kb on - strand at 606.959 kb on + strand at 606.959 kb on + strand at 606.959 kb on + strand at 606.959 kb on + strand at 606.960 kb on - strand at 606.960 kb on - strand at 606.979 kb on + strand at 606.979 kb on + strand at 606.980 kb on - strand at 606.980 kb on - strand at 606.980 kb on - strand at 606.980 kb on - strand at 606.980 kb on - strand at 606.980 kb on - strand at 606.992 kb on + strand at 606.992 kb on + strand at 606.992 kb on + strand at 606.993 kb on - strand at 606.993 kb on - strand at 606.996 kb on + strand at 606.997 kb on - strand at 607.104 kb on + strand, within HER17_RS02705 at 607.104 kb on + strand, within HER17_RS02705 at 607.104 kb on + strand, within HER17_RS02705 at 607.104 kb on + strand, within HER17_RS02705 at 607.105 kb on - strand, within HER17_RS02705 at 607.105 kb on - strand, within HER17_RS02705 at 607.265 kb on - strand, within HER17_RS02705 at 607.313 kb on - strand, within HER17_RS02705 at 607.313 kb on - strand, within HER17_RS02705 at 607.355 kb on + strand, within HER17_RS02705 at 607.355 kb on + strand, within HER17_RS02705 at 607.371 kb on + strand, within HER17_RS02705 at 607.372 kb on - strand, within HER17_RS02705 at 607.473 kb on + strand, within HER17_RS02705 at 607.592 kb on + strand at 607.605 kb on + strand at 607.605 kb on + strand at 607.605 kb on + strand at 607.609 kb on + strand at 607.644 kb on + strand at 607.644 kb on + strand at 607.645 kb on - strand at 607.645 kb on - strand at 607.645 kb on - strand at 607.645 kb on - strand at 607.646 kb on + strand at 607.646 kb on + strand at 607.646 kb on + strand at 607.647 kb on - strand at 607.651 kb on + strand at 607.651 kb on + strand at 607.651 kb on + strand at 607.651 kb on + strand at 607.651 kb on + strand at 607.651 kb on + strand at 607.651 kb on + strand at 607.652 kb on - strand at 607.670 kb on + strand at 607.670 kb on + strand at 607.671 kb on - strand at 607.740 kb on + strand at 607.741 kb on - strand at 607.741 kb on - strand at 607.782 kb on + strand at 607.782 kb on + strand at 607.782 kb on + strand at 607.782 kb on + strand at 607.783 kb on - strand at 607.783 kb on - strand at 607.783 kb on - strand at 607.783 kb on - strand at 607.786 kb on + strand at 607.786 kb on + strand at 607.786 kb on + strand at 607.787 kb on - strand at 607.787 kb on - strand at 607.809 kb on + strand at 607.809 kb on + strand at 607.809 kb on + strand at 607.810 kb on - strand at 607.810 kb on - strand at 607.931 kb on + strand, within HER17_RS02710 at 607.931 kb on + strand, within HER17_RS02710 at 607.931 kb on + strand, within HER17_RS02710 at 607.932 kb on - strand, within HER17_RS02710 at 608.032 kb on + strand, within HER17_RS02710 at 608.033 kb on - strand, within HER17_RS02710 at 608.033 kb on - strand, within HER17_RS02710 at 608.073 kb on + strand, within HER17_RS02710 at 608.094 kb on + strand, within HER17_RS02710 at 608.094 kb on + strand, within HER17_RS02710 at 608.094 kb on + strand, within HER17_RS02710 at 608.094 kb on + strand, within HER17_RS02710 at 608.107 kb on + strand, within HER17_RS02710 at 608.108 kb on - strand, within HER17_RS02710 at 608.108 kb on - strand, within HER17_RS02710 at 608.108 kb on - strand, within HER17_RS02710 at 608.114 kb on - strand, within HER17_RS02710 at 608.114 kb on - strand, within HER17_RS02710 at 608.114 kb on - strand, within HER17_RS02710 at 608.177 kb on + strand, within HER17_RS02710 at 608.177 kb on + strand, within HER17_RS02710 at 608.177 kb on + strand, within HER17_RS02710 at 608.187 kb on - strand, within HER17_RS02710 at 608.187 kb on - strand, within HER17_RS02710 at 608.256 kb on - strand, within HER17_RS02710 at 608.278 kb on + strand, within HER17_RS02710 at 608.295 kb on + strand, within HER17_RS02710 at 608.296 kb on - strand, within HER17_RS02710 at 608.296 kb on - strand, within HER17_RS02710 at 608.296 kb on - strand, within HER17_RS02710 at 608.296 kb on - strand, within HER17_RS02710 at 608.372 kb on - strand, within HER17_RS02710 at 608.372 kb on - strand, within HER17_RS02710 at 608.398 kb on + strand, within HER17_RS02710 at 608.398 kb on + strand, within HER17_RS02710 at 608.399 kb on - strand, within HER17_RS02710 at 608.427 kb on + strand, within HER17_RS02710 at 608.470 kb on + strand at 608.470 kb on + strand at 608.470 kb on + strand at 608.471 kb on - strand at 608.563 kb on + strand at 608.577 kb on + strand at 608.577 kb on + strand at 608.626 kb on - strand at 608.626 kb on - strand at 608.626 kb on - strand at 608.626 kb on - strand at 608.640 kb on - strand at 608.640 kb on - strand at 608.640 kb on - strand at 608.715 kb on + strand, within HER17_RS02715 at 608.756 kb on + strand, within HER17_RS02715 at 608.757 kb on - strand, within HER17_RS02715 at 608.834 kb on + strand, within HER17_RS02715 at 608.834 kb on + strand, within HER17_RS02715 at 608.835 kb on - strand, within HER17_RS02715 at 608.835 kb on - strand, within HER17_RS02715 at 608.903 kb on + strand, within HER17_RS02715 at 608.992 kb on - strand, within HER17_RS02715 at 609.027 kb on + strand, within HER17_RS02715 at 609.028 kb on - strand, within HER17_RS02715 at 609.046 kb on + strand, within HER17_RS02715 at 609.046 kb on + strand, within HER17_RS02715 at 609.047 kb on - strand, within HER17_RS02715 at 609.083 kb on - strand, within HER17_RS02715 at 609.083 kb on - strand, within HER17_RS02715 at 609.083 kb on - strand, within HER17_RS02715 at 609.143 kb on + strand, within HER17_RS02715 at 609.143 kb on + strand, within HER17_RS02715 at 609.154 kb on + strand, within HER17_RS02715 at 609.403 kb on + strand, within HER17_RS02715 at 609.430 kb on + strand at 609.431 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction M9+glycerol remove 606,853 + +0.3 606,853 + +0.1 606,854 - +2.0 606,854 - +0.0 606,892 + -0.4 606,892 + +0.6 606,893 - +0.4 606,893 - +0.1 606,893 - +0.4 606,908 + -1.2 606,923 - -1.1 606,927 - -0.8 606,927 - +1.2 606,927 - +0.6 606,959 + -0.8 606,959 + +0.0 606,959 + +0.0 606,959 + +1.1 606,960 - -0.3 606,960 - -0.6 606,979 + -0.8 606,979 + -1.8 606,980 - -0.7 606,980 - -1.0 606,980 - +1.1 606,980 - +0.9 606,980 - -0.4 606,980 - -0.1 606,992 + -0.0 606,992 + +0.3 606,992 + +0.2 606,993 - +0.4 606,993 - +0.4 606,996 + -0.1 606,997 - +0.8 607,104 + HER17_RS02705 0.20 -0.5 607,104 + HER17_RS02705 0.20 +0.2 607,104 + HER17_RS02705 0.20 -1.5 607,104 + HER17_RS02705 0.20 +0.1 607,105 - HER17_RS02705 0.20 +0.2 607,105 - HER17_RS02705 0.20 +0.3 607,265 - HER17_RS02705 0.46 -0.4 607,313 - HER17_RS02705 0.54 -0.2 607,313 - HER17_RS02705 0.54 +0.4 607,355 + HER17_RS02705 0.61 -0.2 607,355 + HER17_RS02705 0.61 +0.6 607,371 + HER17_RS02705 0.64 -0.2 607,372 - HER17_RS02705 0.64 -0.5 607,473 + HER17_RS02705 0.80 +0.7 607,592 + +1.5 607,605 + +0.0 607,605 + +0.4 607,605 + +2.0 607,609 + +0.5 607,644 + -0.7 607,644 + +0.1 607,645 - +0.0 607,645 - -2.1 607,645 - -0.6 607,645 - +0.6 607,646 + -0.3 607,646 + +0.3 607,646 + +0.1 607,647 - -0.7 607,651 + -0.5 607,651 + +0.3 607,651 + +0.8 607,651 + +0.6 607,651 + +0.3 607,651 + +0.2 607,651 + -0.2 607,652 - -1.1 607,670 + +0.3 607,670 + +0.2 607,671 - -0.0 607,740 + -0.2 607,741 - -0.7 607,741 - -0.3 607,782 + -0.1 607,782 + -1.5 607,782 + -0.2 607,782 + +1.0 607,783 - -2.3 607,783 - +0.8 607,783 - -0.3 607,783 - -0.3 607,786 + +0.1 607,786 + +0.7 607,786 + +0.1 607,787 - -0.6 607,787 - -0.4 607,809 + -1.2 607,809 + +0.4 607,809 + +0.3 607,810 - +0.5 607,810 - -0.1 607,931 + HER17_RS02710 0.16 +0.3 607,931 + HER17_RS02710 0.16 -0.3 607,931 + HER17_RS02710 0.16 +0.9 607,932 - HER17_RS02710 0.16 +0.1 608,032 + HER17_RS02710 0.30 -0.6 608,033 - HER17_RS02710 0.30 +0.3 608,033 - HER17_RS02710 0.30 -0.0 608,073 + HER17_RS02710 0.36 +0.2 608,094 + HER17_RS02710 0.39 +0.6 608,094 + HER17_RS02710 0.39 +0.3 608,094 + HER17_RS02710 0.39 -0.9 608,094 + HER17_RS02710 0.39 -0.8 608,107 + HER17_RS02710 0.40 +0.1 608,108 - HER17_RS02710 0.41 +0.1 608,108 - HER17_RS02710 0.41 -0.6 608,108 - HER17_RS02710 0.41 -0.2 608,114 - HER17_RS02710 0.41 +0.3 608,114 - HER17_RS02710 0.41 -0.9 608,114 - HER17_RS02710 0.41 -1.1 608,177 + HER17_RS02710 0.50 -0.2 608,177 + HER17_RS02710 0.50 +0.9 608,177 + HER17_RS02710 0.50 -0.4 608,187 - HER17_RS02710 0.52 +0.3 608,187 - HER17_RS02710 0.52 -0.4 608,256 - HER17_RS02710 0.61 +0.2 608,278 + HER17_RS02710 0.64 +0.9 608,295 + HER17_RS02710 0.66 -0.4 608,296 - HER17_RS02710 0.67 +0.0 608,296 - HER17_RS02710 0.67 +0.3 608,296 - HER17_RS02710 0.67 +0.3 608,296 - HER17_RS02710 0.67 -0.7 608,372 - HER17_RS02710 0.77 +0.8 608,372 - HER17_RS02710 0.77 +0.6 608,398 + HER17_RS02710 0.81 -0.4 608,398 + HER17_RS02710 0.81 +0.1 608,399 - HER17_RS02710 0.81 +0.2 608,427 + HER17_RS02710 0.85 -0.5 608,470 + +0.2 608,470 + -0.1 608,470 + +0.6 608,471 - -0.0 608,563 + +0.1 608,577 + -1.3 608,577 + +0.4 608,626 - -0.1 608,626 - -0.2 608,626 - -0.2 608,626 - +1.0 608,640 - +0.4 608,640 - -0.3 608,640 - +0.6 608,715 + HER17_RS02715 0.10 -1.1 608,756 + HER17_RS02715 0.15 -0.5 608,757 - HER17_RS02715 0.15 -0.3 608,834 + HER17_RS02715 0.23 -0.5 608,834 + HER17_RS02715 0.23 -2.9 608,835 - HER17_RS02715 0.24 -0.1 608,835 - HER17_RS02715 0.24 +0.6 608,903 + HER17_RS02715 0.31 +0.1 608,992 - HER17_RS02715 0.41 +0.1 609,027 + HER17_RS02715 0.45 -0.1 609,028 - HER17_RS02715 0.45 -0.2 609,046 + HER17_RS02715 0.47 -0.3 609,046 + HER17_RS02715 0.47 +0.3 609,047 - HER17_RS02715 0.47 -0.3 609,083 - HER17_RS02715 0.51 -0.3 609,083 - HER17_RS02715 0.51 -0.1 609,083 - HER17_RS02715 0.51 +0.9 609,143 + HER17_RS02715 0.58 +0.4 609,143 + HER17_RS02715 0.58 -0.2 609,154 + HER17_RS02715 0.59 -0.8 609,403 + HER17_RS02715 0.87 -1.7 609,430 + +1.8 609,431 - +0.3
Or see this region's nucleotide sequence