Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS01765

Experiment: M9+glycerol

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS01755 and HER17_RS01760 overlap by 8 nucleotidesHER17_RS01760 and HER17_RS01765 overlap by 4 nucleotidesHER17_RS01765 and HER17_RS01770 are separated by 99 nucleotides HER17_RS01755: HER17_RS01755 - PilN domain-containing protein, at 413,896 to 414,465 _RS01755 HER17_RS01760: HER17_RS01760 - hypothetical protein, at 414,458 to 415,045 _RS01760 HER17_RS01765: HER17_RS01765 - DNA utilization family protein, at 415,042 to 415,419 _RS01765 HER17_RS01770: HER17_RS01770 - DNA uptake porin HofQ, at 415,519 to 416,793 _RS01770 Position (kb) 415 416Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 414.062 kb on + strand, within HER17_RS01755at 414.062 kb on + strand, within HER17_RS01755at 414.063 kb on - strand, within HER17_RS01755at 414.097 kb on + strand, within HER17_RS01755at 414.098 kb on - strand, within HER17_RS01755at 414.098 kb on - strand, within HER17_RS01755at 414.326 kb on + strand, within HER17_RS01755at 414.329 kb on + strand, within HER17_RS01755at 414.330 kb on - strand, within HER17_RS01755at 414.354 kb on - strand, within HER17_RS01755at 414.354 kb on - strand, within HER17_RS01755at 414.463 kb on + strandat 414.514 kb on + strandat 414.573 kb on + strand, within HER17_RS01760at 414.574 kb on - strand, within HER17_RS01760at 414.574 kb on - strand, within HER17_RS01760at 414.622 kb on - strand, within HER17_RS01760at 414.680 kb on - strand, within HER17_RS01760at 414.714 kb on + strand, within HER17_RS01760at 414.715 kb on - strand, within HER17_RS01760at 414.715 kb on - strand, within HER17_RS01760at 414.769 kb on + strand, within HER17_RS01760at 414.770 kb on - strand, within HER17_RS01760at 414.807 kb on + strand, within HER17_RS01760at 414.807 kb on + strand, within HER17_RS01760at 414.807 kb on + strand, within HER17_RS01760at 414.881 kb on + strand, within HER17_RS01760at 414.882 kb on - strand, within HER17_RS01760at 414.926 kb on + strand, within HER17_RS01760at 414.926 kb on + strand, within HER17_RS01760at 414.926 kb on + strand, within HER17_RS01760at 414.926 kb on + strand, within HER17_RS01760at 414.926 kb on + strand, within HER17_RS01760at 414.926 kb on + strand, within HER17_RS01760at 414.926 kb on + strand, within HER17_RS01760at 414.926 kb on + strand, within HER17_RS01760at 414.926 kb on + strand, within HER17_RS01760at 414.927 kb on - strand, within HER17_RS01760at 414.927 kb on - strand, within HER17_RS01760at 414.927 kb on - strand, within HER17_RS01760at 414.927 kb on - strand, within HER17_RS01760at 414.927 kb on - strand, within HER17_RS01760at 414.927 kb on - strand, within HER17_RS01760at 414.927 kb on - strand, within HER17_RS01760at 414.927 kb on - strand, within HER17_RS01760at 414.927 kb on - strand, within HER17_RS01760at 414.927 kb on - strand, within HER17_RS01760at 414.927 kb on - strand, within HER17_RS01760at 414.954 kb on + strand, within HER17_RS01760at 414.993 kb on + strandat 414.994 kb on - strandat 415.014 kb on + strandat 415.015 kb on - strandat 415.051 kb on - strandat 415.051 kb on - strandat 415.146 kb on + strand, within HER17_RS01765at 415.191 kb on - strand, within HER17_RS01765at 415.191 kb on - strand, within HER17_RS01765at 415.191 kb on - strand, within HER17_RS01765at 415.191 kb on - strand, within HER17_RS01765at 415.314 kb on + strand, within HER17_RS01765at 415.314 kb on + strand, within HER17_RS01765at 415.374 kb on + strand, within HER17_RS01765at 415.418 kb on - strandat 415.498 kb on + strandat 415.525 kb on - strandat 415.525 kb on - strandat 415.535 kb on + strandat 415.535 kb on + strandat 415.536 kb on - strandat 415.536 kb on - strandat 415.536 kb on - strandat 415.562 kb on + strandat 415.563 kb on - strandat 415.646 kb on + strandat 415.729 kb on - strand, within HER17_RS01770at 415.729 kb on - strand, within HER17_RS01770at 415.729 kb on - strand, within HER17_RS01770at 415.729 kb on - strand, within HER17_RS01770at 415.760 kb on + strand, within HER17_RS01770at 415.760 kb on + strand, within HER17_RS01770at 415.776 kb on + strand, within HER17_RS01770at 415.776 kb on + strand, within HER17_RS01770at 415.881 kb on - strand, within HER17_RS01770at 415.890 kb on + strand, within HER17_RS01770at 415.890 kb on + strand, within HER17_RS01770at 415.891 kb on - strand, within HER17_RS01770at 415.891 kb on - strand, within HER17_RS01770at 415.891 kb on - strand, within HER17_RS01770at 415.891 kb on - strand, within HER17_RS01770at 415.891 kb on - strand, within HER17_RS01770at 415.891 kb on - strand, within HER17_RS01770at 415.893 kb on + strand, within HER17_RS01770at 415.893 kb on + strand, within HER17_RS01770at 415.893 kb on + strand, within HER17_RS01770at 415.894 kb on - strand, within HER17_RS01770at 415.894 kb on - strand, within HER17_RS01770at 415.894 kb on - strand, within HER17_RS01770at 415.894 kb on - strand, within HER17_RS01770at 415.894 kb on - strand, within HER17_RS01770at 415.894 kb on - strand, within HER17_RS01770at 415.894 kb on - strand, within HER17_RS01770at 415.894 kb on - strand, within HER17_RS01770at 415.894 kb on - strand, within HER17_RS01770at 415.894 kb on - strand, within HER17_RS01770at 415.912 kb on + strand, within HER17_RS01770at 415.912 kb on + strand, within HER17_RS01770at 415.912 kb on + strand, within HER17_RS01770at 415.913 kb on - strand, within HER17_RS01770at 415.965 kb on - strand, within HER17_RS01770at 415.965 kb on - strand, within HER17_RS01770at 416.008 kb on - strand, within HER17_RS01770at 416.008 kb on - strand, within HER17_RS01770at 416.016 kb on - strand, within HER17_RS01770at 416.090 kb on + strand, within HER17_RS01770at 416.091 kb on - strand, within HER17_RS01770at 416.091 kb on - strand, within HER17_RS01770at 416.107 kb on - strand, within HER17_RS01770at 416.115 kb on + strand, within HER17_RS01770at 416.116 kb on - strand, within HER17_RS01770at 416.291 kb on + strand, within HER17_RS01770at 416.371 kb on - strand, within HER17_RS01770

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Per-strain Table

Position Strand Gene LocusTag Fraction M9+glycerol
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414,062 + HER17_RS01755 0.29 -0.0
414,062 + HER17_RS01755 0.29 -0.1
414,063 - HER17_RS01755 0.29 +0.1
414,097 + HER17_RS01755 0.35 -0.5
414,098 - HER17_RS01755 0.35 -0.6
414,098 - HER17_RS01755 0.35 -0.5
414,326 + HER17_RS01755 0.75 -0.2
414,329 + HER17_RS01755 0.76 -1.0
414,330 - HER17_RS01755 0.76 +0.9
414,354 - HER17_RS01755 0.80 -1.7
414,354 - HER17_RS01755 0.80 -0.5
414,463 + -0.0
414,514 + +0.0
414,573 + HER17_RS01760 0.20 +0.1
414,574 - HER17_RS01760 0.20 +1.9
414,574 - HER17_RS01760 0.20 +0.0
414,622 - HER17_RS01760 0.28 +0.2
414,680 - HER17_RS01760 0.38 -1.2
414,714 + HER17_RS01760 0.44 +0.2
414,715 - HER17_RS01760 0.44 -0.4
414,715 - HER17_RS01760 0.44 +0.1
414,769 + HER17_RS01760 0.53 +0.4
414,770 - HER17_RS01760 0.53 +0.8
414,807 + HER17_RS01760 0.59 -0.8
414,807 + HER17_RS01760 0.59 -0.2
414,807 + HER17_RS01760 0.59 +1.8
414,881 + HER17_RS01760 0.72 -0.4
414,882 - HER17_RS01760 0.72 +0.1
414,926 + HER17_RS01760 0.80 -0.5
414,926 + HER17_RS01760 0.80 -0.4
414,926 + HER17_RS01760 0.80 -0.3
414,926 + HER17_RS01760 0.80 +0.6
414,926 + HER17_RS01760 0.80 +0.4
414,926 + HER17_RS01760 0.80 +0.0
414,926 + HER17_RS01760 0.80 -0.6
414,926 + HER17_RS01760 0.80 +0.7
414,926 + HER17_RS01760 0.80 -0.0
414,927 - HER17_RS01760 0.80 -0.8
414,927 - HER17_RS01760 0.80 -0.6
414,927 - HER17_RS01760 0.80 -0.7
414,927 - HER17_RS01760 0.80 -0.6
414,927 - HER17_RS01760 0.80 +0.6
414,927 - HER17_RS01760 0.80 -0.7
414,927 - HER17_RS01760 0.80 +0.0
414,927 - HER17_RS01760 0.80 -0.0
414,927 - HER17_RS01760 0.80 +0.1
414,927 - HER17_RS01760 0.80 +0.1
414,927 - HER17_RS01760 0.80 +0.5
414,954 + HER17_RS01760 0.84 -2.9
414,993 + -0.3
414,994 - -0.2
415,014 + -0.7
415,015 - -0.1
415,051 - +0.2
415,051 - -0.5
415,146 + HER17_RS01765 0.28 +0.3
415,191 - HER17_RS01765 0.39 +0.7
415,191 - HER17_RS01765 0.39 -0.0
415,191 - HER17_RS01765 0.39 +0.6
415,191 - HER17_RS01765 0.39 -1.6
415,314 + HER17_RS01765 0.72 +0.2
415,314 + HER17_RS01765 0.72 -0.9
415,374 + HER17_RS01765 0.88 -0.0
415,418 - +0.5
415,498 + -0.2
415,525 - -0.3
415,525 - +0.1
415,535 + +0.2
415,535 + -0.1
415,536 - +0.6
415,536 - +0.9
415,536 - +0.3
415,562 + -0.0
415,563 - +1.3
415,646 + -0.1
415,729 - HER17_RS01770 0.16 +0.8
415,729 - HER17_RS01770 0.16 -0.2
415,729 - HER17_RS01770 0.16 +0.1
415,729 - HER17_RS01770 0.16 -0.1
415,760 + HER17_RS01770 0.19 +0.3
415,760 + HER17_RS01770 0.19 +0.7
415,776 + HER17_RS01770 0.20 -0.0
415,776 + HER17_RS01770 0.20 -0.7
415,881 - HER17_RS01770 0.28 -0.7
415,890 + HER17_RS01770 0.29 -0.4
415,890 + HER17_RS01770 0.29 +0.0
415,891 - HER17_RS01770 0.29 +0.1
415,891 - HER17_RS01770 0.29 +0.0
415,891 - HER17_RS01770 0.29 -0.1
415,891 - HER17_RS01770 0.29 -0.4
415,891 - HER17_RS01770 0.29 +0.4
415,891 - HER17_RS01770 0.29 -0.7
415,893 + HER17_RS01770 0.29 -0.4
415,893 + HER17_RS01770 0.29 +0.3
415,893 + HER17_RS01770 0.29 +0.5
415,894 - HER17_RS01770 0.29 +0.1
415,894 - HER17_RS01770 0.29 -0.7
415,894 - HER17_RS01770 0.29 +0.3
415,894 - HER17_RS01770 0.29 +0.9
415,894 - HER17_RS01770 0.29 +0.2
415,894 - HER17_RS01770 0.29 -0.3
415,894 - HER17_RS01770 0.29 -0.3
415,894 - HER17_RS01770 0.29 +0.0
415,894 - HER17_RS01770 0.29 -0.2
415,894 - HER17_RS01770 0.29 -0.1
415,912 + HER17_RS01770 0.31 +0.1
415,912 + HER17_RS01770 0.31 -0.2
415,912 + HER17_RS01770 0.31 -0.1
415,913 - HER17_RS01770 0.31 -2.4
415,965 - HER17_RS01770 0.35 +1.5
415,965 - HER17_RS01770 0.35 +0.1
416,008 - HER17_RS01770 0.38 -0.3
416,008 - HER17_RS01770 0.38 +0.1
416,016 - HER17_RS01770 0.39 -0.3
416,090 + HER17_RS01770 0.45 -1.1
416,091 - HER17_RS01770 0.45 -0.0
416,091 - HER17_RS01770 0.45 +0.4
416,107 - HER17_RS01770 0.46 -0.5
416,115 + HER17_RS01770 0.47 -1.3
416,116 - HER17_RS01770 0.47 +0.6
416,291 + HER17_RS01770 0.61 +0.1
416,371 - HER17_RS01770 0.67 +0.9

Or see this region's nucleotide sequence