Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS21410 and HER17_RS21415 are separated by 138 nucleotides HER17_RS21415 and HER17_RS21420 are separated by 64 nucleotides HER17_RS21420 and HER17_RS21425 are separated by 162 nucleotides
HER17_RS21410: HER17_RS21410 - fatty acid biosynthesis protein FabY, at 4,799,906 to 4,800,847
_RS21410
HER17_RS21415: HER17_RS21415 - D-aminoacyl-tRNA deacylase, at 4,800,986 to 4,801,423
_RS21415
HER17_RS21420: HER17_RS21420 - glucose-1-phosphatase, at 4,801,488 to 4,802,099
_RS21420
HER17_RS21425: HER17_RS21425 - ribosome-dependent GTPase TypA, at 4,802,262 to 4,804,085
_RS21425
Position (kb) 4800
4801
4802 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4799.992 kb on + strand at 4800.037 kb on + strand, within HER17_RS21410 at 4800.080 kb on + strand, within HER17_RS21410 at 4800.091 kb on + strand, within HER17_RS21410 at 4800.091 kb on + strand, within HER17_RS21410 at 4800.092 kb on - strand, within HER17_RS21410 at 4800.092 kb on - strand, within HER17_RS21410 at 4800.111 kb on - strand, within HER17_RS21410 at 4800.111 kb on - strand, within HER17_RS21410 at 4800.124 kb on - strand, within HER17_RS21410 at 4800.283 kb on + strand, within HER17_RS21410 at 4800.284 kb on - strand, within HER17_RS21410 at 4800.286 kb on + strand, within HER17_RS21410 at 4800.303 kb on + strand, within HER17_RS21410 at 4800.303 kb on + strand, within HER17_RS21410 at 4800.304 kb on - strand, within HER17_RS21410 at 4800.351 kb on + strand, within HER17_RS21410 at 4800.352 kb on - strand, within HER17_RS21410 at 4800.421 kb on + strand, within HER17_RS21410 at 4800.422 kb on - strand, within HER17_RS21410 at 4800.574 kb on + strand, within HER17_RS21410 at 4800.589 kb on + strand, within HER17_RS21410 at 4800.590 kb on - strand, within HER17_RS21410 at 4800.593 kb on + strand, within HER17_RS21410 at 4800.594 kb on - strand, within HER17_RS21410 at 4800.594 kb on - strand, within HER17_RS21410 at 4800.626 kb on + strand, within HER17_RS21410 at 4800.627 kb on - strand, within HER17_RS21410 at 4800.649 kb on + strand, within HER17_RS21410 at 4800.661 kb on + strand, within HER17_RS21410 at 4800.661 kb on + strand, within HER17_RS21410 at 4800.661 kb on + strand, within HER17_RS21410 at 4800.732 kb on + strand, within HER17_RS21410 at 4800.732 kb on + strand, within HER17_RS21410 at 4800.732 kb on + strand, within HER17_RS21410 at 4800.733 kb on - strand, within HER17_RS21410 at 4800.733 kb on - strand, within HER17_RS21410 at 4800.733 kb on - strand, within HER17_RS21410 at 4800.772 kb on + strand at 4800.799 kb on - strand at 4800.799 kb on - strand at 4800.801 kb on + strand at 4800.801 kb on + strand at 4800.801 kb on + strand at 4800.801 kb on + strand at 4800.801 kb on + strand at 4800.801 kb on + strand at 4800.801 kb on + strand at 4800.802 kb on - strand at 4800.802 kb on - strand at 4800.802 kb on - strand at 4800.802 kb on - strand at 4800.830 kb on + strand at 4800.843 kb on + strand at 4800.843 kb on + strand at 4800.843 kb on + strand at 4800.843 kb on + strand at 4800.843 kb on + strand at 4800.843 kb on + strand at 4800.844 kb on - strand at 4800.844 kb on - strand at 4800.844 kb on - strand at 4800.847 kb on + strand at 4800.847 kb on + strand at 4800.847 kb on + strand at 4800.848 kb on - strand at 4800.848 kb on - strand at 4800.848 kb on - strand at 4800.848 kb on - strand at 4800.859 kb on + strand at 4800.860 kb on - strand at 4800.891 kb on + strand at 4800.916 kb on + strand at 4800.917 kb on - strand at 4800.939 kb on + strand at 4800.940 kb on - strand at 4800.940 kb on - strand at 4800.940 kb on - strand at 4800.948 kb on - strand at 4800.948 kb on - strand at 4800.971 kb on + strand at 4800.972 kb on - strand at 4800.979 kb on + strand at 4800.979 kb on + strand at 4800.980 kb on - strand at 4800.980 kb on - strand at 4800.980 kb on - strand at 4800.987 kb on + strand at 4800.987 kb on + strand at 4800.988 kb on - strand at 4800.988 kb on - strand at 4800.988 kb on - strand at 4800.988 kb on - strand at 4800.988 kb on - strand at 4800.988 kb on - strand at 4801.039 kb on + strand, within HER17_RS21415 at 4801.102 kb on - strand, within HER17_RS21415 at 4801.107 kb on + strand, within HER17_RS21415 at 4801.107 kb on + strand, within HER17_RS21415 at 4801.107 kb on + strand, within HER17_RS21415 at 4801.108 kb on - strand, within HER17_RS21415 at 4801.263 kb on - strand, within HER17_RS21415 at 4801.277 kb on + strand, within HER17_RS21415 at 4801.343 kb on + strand, within HER17_RS21415 at 4801.343 kb on + strand, within HER17_RS21415 at 4801.379 kb on + strand, within HER17_RS21415 at 4801.380 kb on - strand at 4801.380 kb on - strand at 4801.423 kb on + strand at 4801.423 kb on + strand at 4801.423 kb on + strand at 4801.434 kb on + strand at 4801.435 kb on - strand at 4801.435 kb on - strand at 4801.447 kb on - strand at 4801.447 kb on - strand at 4801.478 kb on - strand at 4801.485 kb on - strand at 4801.654 kb on + strand, within HER17_RS21420 at 4801.654 kb on + strand, within HER17_RS21420 at 4801.654 kb on + strand, within HER17_RS21420 at 4801.654 kb on + strand, within HER17_RS21420 at 4801.655 kb on - strand, within HER17_RS21420 at 4801.655 kb on - strand, within HER17_RS21420 at 4801.655 kb on - strand, within HER17_RS21420 at 4801.655 kb on - strand, within HER17_RS21420 at 4801.655 kb on - strand, within HER17_RS21420 at 4801.655 kb on - strand, within HER17_RS21420 at 4801.660 kb on + strand, within HER17_RS21420 at 4801.660 kb on + strand, within HER17_RS21420 at 4801.660 kb on + strand, within HER17_RS21420 at 4801.679 kb on + strand, within HER17_RS21420 at 4801.683 kb on + strand, within HER17_RS21420 at 4801.683 kb on + strand, within HER17_RS21420 at 4801.683 kb on + strand, within HER17_RS21420 at 4801.684 kb on - strand, within HER17_RS21420 at 4801.691 kb on + strand, within HER17_RS21420 at 4801.705 kb on + strand, within HER17_RS21420 at 4801.705 kb on + strand, within HER17_RS21420 at 4801.706 kb on - strand, within HER17_RS21420 at 4801.706 kb on - strand, within HER17_RS21420 at 4801.706 kb on - strand, within HER17_RS21420 at 4801.776 kb on - strand, within HER17_RS21420 at 4802.027 kb on + strand, within HER17_RS21420 at 4802.028 kb on - strand, within HER17_RS21420 at 4802.044 kb on - strand at 4802.061 kb on - strand at 4802.064 kb on + strand at 4802.079 kb on + strand at 4802.090 kb on + strand at 4802.092 kb on + strand at 4802.092 kb on + strand at 4802.092 kb on + strand at 4802.093 kb on - strand at 4802.093 kb on - strand at 4802.093 kb on - strand at 4802.118 kb on + strand at 4802.119 kb on - strand at 4802.125 kb on - strand at 4802.169 kb on - strand at 4802.174 kb on + strand at 4802.206 kb on - strand at 4802.240 kb on - strand at 4802.264 kb on - strand at 4802.345 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,799,992 + -0.4 4,800,037 + HER17_RS21410 0.14 +1.7 4,800,080 + HER17_RS21410 0.18 +1.4 4,800,091 + HER17_RS21410 0.20 +0.4 4,800,091 + HER17_RS21410 0.20 +0.2 4,800,092 - HER17_RS21410 0.20 +0.1 4,800,092 - HER17_RS21410 0.20 -0.0 4,800,111 - HER17_RS21410 0.22 -0.2 4,800,111 - HER17_RS21410 0.22 +0.4 4,800,124 - HER17_RS21410 0.23 -0.0 4,800,283 + HER17_RS21410 0.40 -0.4 4,800,284 - HER17_RS21410 0.40 +1.0 4,800,286 + HER17_RS21410 0.40 +0.6 4,800,303 + HER17_RS21410 0.42 +0.8 4,800,303 + HER17_RS21410 0.42 -0.0 4,800,304 - HER17_RS21410 0.42 +0.1 4,800,351 + HER17_RS21410 0.47 +0.8 4,800,352 - HER17_RS21410 0.47 +1.5 4,800,421 + HER17_RS21410 0.55 +0.6 4,800,422 - HER17_RS21410 0.55 +0.1 4,800,574 + HER17_RS21410 0.71 -0.3 4,800,589 + HER17_RS21410 0.73 +0.1 4,800,590 - HER17_RS21410 0.73 +0.3 4,800,593 + HER17_RS21410 0.73 +0.1 4,800,594 - HER17_RS21410 0.73 -3.1 4,800,594 - HER17_RS21410 0.73 -0.0 4,800,626 + HER17_RS21410 0.76 +0.6 4,800,627 - HER17_RS21410 0.77 -0.4 4,800,649 + HER17_RS21410 0.79 -0.2 4,800,661 + HER17_RS21410 0.80 +0.1 4,800,661 + HER17_RS21410 0.80 -0.7 4,800,661 + HER17_RS21410 0.80 +1.3 4,800,732 + HER17_RS21410 0.88 +0.1 4,800,732 + HER17_RS21410 0.88 -0.4 4,800,732 + HER17_RS21410 0.88 +0.4 4,800,733 - HER17_RS21410 0.88 +0.6 4,800,733 - HER17_RS21410 0.88 +0.4 4,800,733 - HER17_RS21410 0.88 -0.1 4,800,772 + -2.2 4,800,799 - +0.2 4,800,799 - -0.7 4,800,801 + +0.4 4,800,801 + +0.1 4,800,801 + -0.0 4,800,801 + +0.2 4,800,801 + -0.1 4,800,801 + +0.3 4,800,801 + +0.7 4,800,802 - +0.4 4,800,802 - +0.0 4,800,802 - +1.1 4,800,802 - -0.5 4,800,830 + -0.9 4,800,843 + +0.2 4,800,843 + -1.0 4,800,843 + -0.5 4,800,843 + -0.1 4,800,843 + +0.3 4,800,843 + +1.4 4,800,844 - -0.3 4,800,844 - -0.3 4,800,844 - -0.0 4,800,847 + +0.3 4,800,847 + +0.8 4,800,847 + -0.2 4,800,848 - +0.4 4,800,848 - -0.4 4,800,848 - +0.1 4,800,848 - +0.5 4,800,859 + +0.3 4,800,860 - +1.4 4,800,891 + -0.0 4,800,916 + -0.1 4,800,917 - -0.0 4,800,939 + -1.2 4,800,940 - +0.1 4,800,940 - +0.0 4,800,940 - -0.0 4,800,948 - +0.4 4,800,948 - -0.1 4,800,971 + +0.4 4,800,972 - -0.3 4,800,979 + +0.2 4,800,979 + -0.8 4,800,980 - -0.1 4,800,980 - -0.2 4,800,980 - -0.1 4,800,987 + -0.2 4,800,987 + +0.0 4,800,988 - -0.2 4,800,988 - -0.1 4,800,988 - +0.4 4,800,988 - +0.5 4,800,988 - +0.0 4,800,988 - +0.7 4,801,039 + HER17_RS21415 0.12 -0.0 4,801,102 - HER17_RS21415 0.26 -1.1 4,801,107 + HER17_RS21415 0.28 -0.3 4,801,107 + HER17_RS21415 0.28 +1.1 4,801,107 + HER17_RS21415 0.28 -0.2 4,801,108 - HER17_RS21415 0.28 -0.4 4,801,263 - HER17_RS21415 0.63 -0.0 4,801,277 + HER17_RS21415 0.66 -0.1 4,801,343 + HER17_RS21415 0.82 +0.3 4,801,343 + HER17_RS21415 0.82 +0.2 4,801,379 + HER17_RS21415 0.90 +0.2 4,801,380 - +0.6 4,801,380 - +0.6 4,801,423 + -0.4 4,801,423 + -0.0 4,801,423 + +0.7 4,801,434 + -0.4 4,801,435 - +0.1 4,801,435 - +0.1 4,801,447 - +0.2 4,801,447 - +0.6 4,801,478 - -0.0 4,801,485 - -0.5 4,801,654 + HER17_RS21420 0.27 +0.9 4,801,654 + HER17_RS21420 0.27 +0.0 4,801,654 + HER17_RS21420 0.27 +0.0 4,801,654 + HER17_RS21420 0.27 -0.8 4,801,655 - HER17_RS21420 0.27 +1.5 4,801,655 - HER17_RS21420 0.27 -0.2 4,801,655 - HER17_RS21420 0.27 -0.9 4,801,655 - HER17_RS21420 0.27 -2.0 4,801,655 - HER17_RS21420 0.27 -0.3 4,801,655 - HER17_RS21420 0.27 +0.3 4,801,660 + HER17_RS21420 0.28 +1.0 4,801,660 + HER17_RS21420 0.28 +0.2 4,801,660 + HER17_RS21420 0.28 -0.2 4,801,679 + HER17_RS21420 0.31 +0.3 4,801,683 + HER17_RS21420 0.32 +1.0 4,801,683 + HER17_RS21420 0.32 -0.5 4,801,683 + HER17_RS21420 0.32 -2.0 4,801,684 - HER17_RS21420 0.32 +0.4 4,801,691 + HER17_RS21420 0.33 -1.0 4,801,705 + HER17_RS21420 0.35 -0.3 4,801,705 + HER17_RS21420 0.35 +0.7 4,801,706 - HER17_RS21420 0.36 +0.2 4,801,706 - HER17_RS21420 0.36 -0.1 4,801,706 - HER17_RS21420 0.36 -1.3 4,801,776 - HER17_RS21420 0.47 -0.1 4,802,027 + HER17_RS21420 0.88 -0.3 4,802,028 - HER17_RS21420 0.88 -0.9 4,802,044 - -0.4 4,802,061 - +0.0 4,802,064 + +0.0 4,802,079 + -0.5 4,802,090 + +0.2 4,802,092 + -0.1 4,802,092 + +0.3 4,802,092 + -0.8 4,802,093 - -0.6 4,802,093 - +0.9 4,802,093 - +0.8 4,802,118 + +0.3 4,802,119 - -0.8 4,802,125 - +0.2 4,802,169 - +0.7 4,802,174 + -0.2 4,802,206 - +0.0 4,802,240 - -0.4 4,802,264 - +0.5 4,802,345 + -1.0
Or see this region's nucleotide sequence