Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS21070 and HER17_RS21075 are separated by 28 nucleotides HER17_RS21075 and HER17_RS21080 are separated by 116 nucleotides
HER17_RS21070: HER17_RS21070 - sugar ABC transporter permease, at 4,712,873 to 4,714,003
_RS21070
HER17_RS21075: HER17_RS21075 - xylose ABC transporter ATP-binding protein, at 4,714,032 to 4,715,573
_RS21075
HER17_RS21080: HER17_RS21080 - D-xylose ABC transporter substrate-binding protein, at 4,715,690 to 4,716,685
_RS21080
Position (kb) 4714
4715
4716 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4713.250 kb on - strand, within HER17_RS21070 at 4713.250 kb on - strand, within HER17_RS21070 at 4713.250 kb on - strand, within HER17_RS21070 at 4713.357 kb on + strand, within HER17_RS21070 at 4713.423 kb on - strand, within HER17_RS21070 at 4713.434 kb on + strand, within HER17_RS21070 at 4713.475 kb on + strand, within HER17_RS21070 at 4713.486 kb on - strand, within HER17_RS21070 at 4713.505 kb on + strand, within HER17_RS21070 at 4713.528 kb on + strand, within HER17_RS21070 at 4713.528 kb on + strand, within HER17_RS21070 at 4713.528 kb on + strand, within HER17_RS21070 at 4713.528 kb on + strand, within HER17_RS21070 at 4713.529 kb on - strand, within HER17_RS21070 at 4713.529 kb on - strand, within HER17_RS21070 at 4713.776 kb on + strand, within HER17_RS21070 at 4713.820 kb on + strand, within HER17_RS21070 at 4713.821 kb on - strand, within HER17_RS21070 at 4713.835 kb on + strand, within HER17_RS21070 at 4713.903 kb on + strand at 4713.921 kb on + strand at 4713.921 kb on + strand at 4713.921 kb on + strand at 4713.921 kb on + strand at 4713.921 kb on + strand at 4713.921 kb on + strand at 4713.922 kb on - strand at 4713.922 kb on - strand at 4713.922 kb on - strand at 4713.966 kb on + strand at 4713.966 kb on + strand at 4713.967 kb on - strand at 4713.967 kb on - strand at 4713.967 kb on - strand at 4713.967 kb on - strand at 4714.219 kb on - strand, within HER17_RS21075 at 4714.238 kb on + strand, within HER17_RS21075 at 4714.238 kb on + strand, within HER17_RS21075 at 4714.238 kb on + strand, within HER17_RS21075 at 4714.240 kb on + strand, within HER17_RS21075 at 4714.240 kb on + strand, within HER17_RS21075 at 4714.240 kb on + strand, within HER17_RS21075 at 4714.250 kb on - strand, within HER17_RS21075 at 4714.250 kb on - strand, within HER17_RS21075 at 4714.262 kb on + strand, within HER17_RS21075 at 4714.322 kb on + strand, within HER17_RS21075 at 4714.535 kb on + strand, within HER17_RS21075 at 4714.535 kb on + strand, within HER17_RS21075 at 4714.535 kb on + strand, within HER17_RS21075 at 4714.536 kb on - strand, within HER17_RS21075 at 4714.536 kb on - strand, within HER17_RS21075 at 4714.604 kb on + strand, within HER17_RS21075 at 4714.604 kb on + strand, within HER17_RS21075 at 4714.604 kb on + strand, within HER17_RS21075 at 4714.605 kb on - strand, within HER17_RS21075 at 4714.605 kb on - strand, within HER17_RS21075 at 4714.613 kb on + strand, within HER17_RS21075 at 4714.613 kb on + strand, within HER17_RS21075 at 4714.614 kb on - strand, within HER17_RS21075 at 4714.674 kb on - strand, within HER17_RS21075 at 4714.755 kb on - strand, within HER17_RS21075 at 4714.797 kb on + strand, within HER17_RS21075 at 4714.801 kb on - strand, within HER17_RS21075 at 4714.982 kb on + strand, within HER17_RS21075 at 4714.983 kb on - strand, within HER17_RS21075 at 4714.984 kb on + strand, within HER17_RS21075 at 4714.984 kb on + strand, within HER17_RS21075 at 4714.985 kb on - strand, within HER17_RS21075 at 4714.985 kb on - strand, within HER17_RS21075 at 4714.985 kb on - strand, within HER17_RS21075 at 4714.985 kb on - strand, within HER17_RS21075 at 4714.985 kb on - strand, within HER17_RS21075 at 4714.985 kb on - strand, within HER17_RS21075 at 4714.985 kb on - strand, within HER17_RS21075 at 4714.985 kb on - strand, within HER17_RS21075 at 4714.985 kb on - strand, within HER17_RS21075 at 4715.139 kb on + strand, within HER17_RS21075 at 4715.140 kb on - strand, within HER17_RS21075 at 4715.211 kb on + strand, within HER17_RS21075 at 4715.211 kb on + strand, within HER17_RS21075 at 4715.211 kb on + strand, within HER17_RS21075 at 4715.211 kb on + strand, within HER17_RS21075 at 4715.211 kb on + strand, within HER17_RS21075 at 4715.211 kb on + strand, within HER17_RS21075 at 4715.211 kb on + strand, within HER17_RS21075 at 4715.215 kb on + strand, within HER17_RS21075 at 4715.215 kb on + strand, within HER17_RS21075 at 4715.215 kb on + strand, within HER17_RS21075 at 4715.216 kb on - strand, within HER17_RS21075 at 4715.216 kb on - strand, within HER17_RS21075 at 4715.216 kb on - strand, within HER17_RS21075 at 4715.216 kb on - strand, within HER17_RS21075 at 4715.216 kb on - strand, within HER17_RS21075 at 4715.219 kb on + strand, within HER17_RS21075 at 4715.219 kb on + strand, within HER17_RS21075 at 4715.219 kb on + strand, within HER17_RS21075 at 4715.219 kb on + strand, within HER17_RS21075 at 4715.219 kb on + strand, within HER17_RS21075 at 4715.219 kb on + strand, within HER17_RS21075 at 4715.219 kb on + strand, within HER17_RS21075 at 4715.220 kb on - strand, within HER17_RS21075 at 4715.220 kb on - strand, within HER17_RS21075 at 4715.220 kb on - strand, within HER17_RS21075 at 4715.220 kb on - strand, within HER17_RS21075 at 4715.220 kb on - strand, within HER17_RS21075 at 4715.220 kb on - strand, within HER17_RS21075 at 4715.220 kb on - strand, within HER17_RS21075 at 4715.220 kb on - strand, within HER17_RS21075 at 4715.220 kb on - strand, within HER17_RS21075 at 4715.220 kb on - strand, within HER17_RS21075 at 4715.228 kb on - strand, within HER17_RS21075 at 4715.351 kb on + strand, within HER17_RS21075 at 4715.351 kb on + strand, within HER17_RS21075 at 4715.351 kb on + strand, within HER17_RS21075 at 4715.352 kb on - strand, within HER17_RS21075 at 4715.352 kb on - strand, within HER17_RS21075 at 4715.365 kb on - strand, within HER17_RS21075 at 4715.398 kb on + strand, within HER17_RS21075 at 4715.398 kb on + strand, within HER17_RS21075 at 4715.398 kb on + strand, within HER17_RS21075 at 4715.398 kb on + strand, within HER17_RS21075 at 4715.399 kb on - strand, within HER17_RS21075 at 4715.399 kb on - strand, within HER17_RS21075 at 4715.399 kb on - strand, within HER17_RS21075 at 4715.511 kb on - strand at 4715.514 kb on + strand at 4715.514 kb on + strand at 4715.514 kb on + strand at 4715.514 kb on + strand at 4715.514 kb on + strand at 4715.658 kb on + strand at 4715.659 kb on - strand at 4715.659 kb on - strand at 4715.672 kb on + strand at 4715.672 kb on + strand at 4715.673 kb on - strand at 4715.691 kb on + strand at 4715.692 kb on - strand at 4715.694 kb on + strand at 4715.694 kb on + strand at 4715.694 kb on + strand at 4715.695 kb on - strand at 4715.695 kb on - strand at 4715.695 kb on - strand at 4715.753 kb on - strand at 4715.775 kb on - strand at 4715.787 kb on - strand at 4715.787 kb on - strand at 4715.788 kb on + strand at 4715.788 kb on + strand at 4715.894 kb on - strand, within HER17_RS21080 at 4715.895 kb on + strand, within HER17_RS21080 at 4715.896 kb on - strand, within HER17_RS21080 at 4716.055 kb on + strand, within HER17_RS21080 at 4716.056 kb on - strand, within HER17_RS21080 at 4716.056 kb on - strand, within HER17_RS21080 at 4716.056 kb on - strand, within HER17_RS21080 at 4716.056 kb on - strand, within HER17_RS21080 at 4716.058 kb on + strand, within HER17_RS21080 at 4716.058 kb on + strand, within HER17_RS21080 at 4716.059 kb on - strand, within HER17_RS21080 at 4716.143 kb on + strand, within HER17_RS21080 at 4716.144 kb on - strand, within HER17_RS21080 at 4716.208 kb on + strand, within HER17_RS21080 at 4716.209 kb on - strand, within HER17_RS21080 at 4716.211 kb on + strand, within HER17_RS21080 at 4716.241 kb on - strand, within HER17_RS21080 at 4716.271 kb on - strand, within HER17_RS21080 at 4716.366 kb on - strand, within HER17_RS21080 at 4716.391 kb on + strand, within HER17_RS21080 at 4716.434 kb on + strand, within HER17_RS21080 at 4716.434 kb on + strand, within HER17_RS21080 at 4716.434 kb on + strand, within HER17_RS21080 at 4716.465 kb on - strand, within HER17_RS21080
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,713,250 - HER17_RS21070 0.33 -0.3 4,713,250 - HER17_RS21070 0.33 -0.3 4,713,250 - HER17_RS21070 0.33 +0.5 4,713,357 + HER17_RS21070 0.43 -0.0 4,713,423 - HER17_RS21070 0.49 +1.1 4,713,434 + HER17_RS21070 0.50 -0.7 4,713,475 + HER17_RS21070 0.53 +0.2 4,713,486 - HER17_RS21070 0.54 +0.3 4,713,505 + HER17_RS21070 0.56 -0.0 4,713,528 + HER17_RS21070 0.58 +0.1 4,713,528 + HER17_RS21070 0.58 +0.1 4,713,528 + HER17_RS21070 0.58 +0.5 4,713,528 + HER17_RS21070 0.58 +0.3 4,713,529 - HER17_RS21070 0.58 -0.1 4,713,529 - HER17_RS21070 0.58 -0.3 4,713,776 + HER17_RS21070 0.80 +0.9 4,713,820 + HER17_RS21070 0.84 -0.5 4,713,821 - HER17_RS21070 0.84 +1.2 4,713,835 + HER17_RS21070 0.85 -0.0 4,713,903 + -0.3 4,713,921 + -0.6 4,713,921 + +0.4 4,713,921 + +0.2 4,713,921 + -0.4 4,713,921 + +0.7 4,713,921 + -0.7 4,713,922 - +0.6 4,713,922 - +0.5 4,713,922 - -0.3 4,713,966 + +0.7 4,713,966 + +1.3 4,713,967 - +0.2 4,713,967 - +0.1 4,713,967 - +0.4 4,713,967 - -0.1 4,714,219 - HER17_RS21075 0.12 -0.4 4,714,238 + HER17_RS21075 0.13 -0.5 4,714,238 + HER17_RS21075 0.13 -0.0 4,714,238 + HER17_RS21075 0.13 +0.4 4,714,240 + HER17_RS21075 0.13 +0.7 4,714,240 + HER17_RS21075 0.13 -0.4 4,714,240 + HER17_RS21075 0.13 -0.1 4,714,250 - HER17_RS21075 0.14 -0.2 4,714,250 - HER17_RS21075 0.14 -0.0 4,714,262 + HER17_RS21075 0.15 -0.3 4,714,322 + HER17_RS21075 0.19 -0.3 4,714,535 + HER17_RS21075 0.33 +0.7 4,714,535 + HER17_RS21075 0.33 -0.4 4,714,535 + HER17_RS21075 0.33 -0.4 4,714,536 - HER17_RS21075 0.33 -1.0 4,714,536 - HER17_RS21075 0.33 +0.3 4,714,604 + HER17_RS21075 0.37 +0.6 4,714,604 + HER17_RS21075 0.37 -0.0 4,714,604 + HER17_RS21075 0.37 +0.9 4,714,605 - HER17_RS21075 0.37 -0.1 4,714,605 - HER17_RS21075 0.37 -2.0 4,714,613 + HER17_RS21075 0.38 +2.5 4,714,613 + HER17_RS21075 0.38 -3.5 4,714,614 - HER17_RS21075 0.38 -0.4 4,714,674 - HER17_RS21075 0.42 -1.5 4,714,755 - HER17_RS21075 0.47 -0.0 4,714,797 + HER17_RS21075 0.50 -0.2 4,714,801 - HER17_RS21075 0.50 +0.2 4,714,982 + HER17_RS21075 0.62 +0.4 4,714,983 - HER17_RS21075 0.62 +0.2 4,714,984 + HER17_RS21075 0.62 -0.1 4,714,984 + HER17_RS21075 0.62 -0.5 4,714,985 - HER17_RS21075 0.62 +0.5 4,714,985 - HER17_RS21075 0.62 -0.5 4,714,985 - HER17_RS21075 0.62 -0.0 4,714,985 - HER17_RS21075 0.62 -0.2 4,714,985 - HER17_RS21075 0.62 +1.7 4,714,985 - HER17_RS21075 0.62 +1.1 4,714,985 - HER17_RS21075 0.62 -0.1 4,714,985 - HER17_RS21075 0.62 -0.0 4,714,985 - HER17_RS21075 0.62 +0.0 4,715,139 + HER17_RS21075 0.72 -0.3 4,715,140 - HER17_RS21075 0.72 +0.0 4,715,211 + HER17_RS21075 0.76 -0.7 4,715,211 + HER17_RS21075 0.76 +0.0 4,715,211 + HER17_RS21075 0.76 +0.1 4,715,211 + HER17_RS21075 0.76 -1.5 4,715,211 + HER17_RS21075 0.76 -0.1 4,715,211 + HER17_RS21075 0.76 +0.2 4,715,211 + HER17_RS21075 0.76 -0.5 4,715,215 + HER17_RS21075 0.77 -0.6 4,715,215 + HER17_RS21075 0.77 +0.4 4,715,215 + HER17_RS21075 0.77 -0.5 4,715,216 - HER17_RS21075 0.77 +0.6 4,715,216 - HER17_RS21075 0.77 +0.1 4,715,216 - HER17_RS21075 0.77 +0.0 4,715,216 - HER17_RS21075 0.77 +0.6 4,715,216 - HER17_RS21075 0.77 -0.3 4,715,219 + HER17_RS21075 0.77 -0.1 4,715,219 + HER17_RS21075 0.77 +0.5 4,715,219 + HER17_RS21075 0.77 -0.4 4,715,219 + HER17_RS21075 0.77 +0.6 4,715,219 + HER17_RS21075 0.77 -0.3 4,715,219 + HER17_RS21075 0.77 -0.2 4,715,219 + HER17_RS21075 0.77 -0.0 4,715,220 - HER17_RS21075 0.77 -0.4 4,715,220 - HER17_RS21075 0.77 +0.1 4,715,220 - HER17_RS21075 0.77 -0.7 4,715,220 - HER17_RS21075 0.77 +0.3 4,715,220 - HER17_RS21075 0.77 +0.8 4,715,220 - HER17_RS21075 0.77 +2.1 4,715,220 - HER17_RS21075 0.77 +0.3 4,715,220 - HER17_RS21075 0.77 -0.1 4,715,220 - HER17_RS21075 0.77 +0.2 4,715,220 - HER17_RS21075 0.77 -0.5 4,715,228 - HER17_RS21075 0.78 +0.3 4,715,351 + HER17_RS21075 0.86 -0.6 4,715,351 + HER17_RS21075 0.86 -0.4 4,715,351 + HER17_RS21075 0.86 -0.1 4,715,352 - HER17_RS21075 0.86 -0.4 4,715,352 - HER17_RS21075 0.86 +0.6 4,715,365 - HER17_RS21075 0.86 +0.9 4,715,398 + HER17_RS21075 0.89 -0.3 4,715,398 + HER17_RS21075 0.89 +0.3 4,715,398 + HER17_RS21075 0.89 -0.1 4,715,398 + HER17_RS21075 0.89 +0.1 4,715,399 - HER17_RS21075 0.89 +0.8 4,715,399 - HER17_RS21075 0.89 +0.3 4,715,399 - HER17_RS21075 0.89 -0.4 4,715,511 - +0.6 4,715,514 + +0.4 4,715,514 + +0.2 4,715,514 + -0.5 4,715,514 + +0.0 4,715,514 + -0.3 4,715,658 + +0.5 4,715,659 - -0.0 4,715,659 - -0.5 4,715,672 + +0.2 4,715,672 + -1.1 4,715,673 - +0.4 4,715,691 + +0.6 4,715,692 - +0.9 4,715,694 + +0.1 4,715,694 + +0.4 4,715,694 + +0.4 4,715,695 - -0.9 4,715,695 - +0.4 4,715,695 - +0.1 4,715,753 - -0.0 4,715,775 - -0.2 4,715,787 - -0.7 4,715,787 - +0.2 4,715,788 + +1.2 4,715,788 + -0.5 4,715,894 - HER17_RS21080 0.20 +0.6 4,715,895 + HER17_RS21080 0.21 -0.4 4,715,896 - HER17_RS21080 0.21 +0.4 4,716,055 + HER17_RS21080 0.37 -0.7 4,716,056 - HER17_RS21080 0.37 -0.8 4,716,056 - HER17_RS21080 0.37 +0.3 4,716,056 - HER17_RS21080 0.37 -0.2 4,716,056 - HER17_RS21080 0.37 +0.4 4,716,058 + HER17_RS21080 0.37 +1.0 4,716,058 + HER17_RS21080 0.37 -0.1 4,716,059 - HER17_RS21080 0.37 +0.3 4,716,143 + HER17_RS21080 0.45 -0.9 4,716,144 - HER17_RS21080 0.46 -1.0 4,716,208 + HER17_RS21080 0.52 +0.1 4,716,209 - HER17_RS21080 0.52 +0.1 4,716,211 + HER17_RS21080 0.52 +0.1 4,716,241 - HER17_RS21080 0.55 +0.2 4,716,271 - HER17_RS21080 0.58 -1.6 4,716,366 - HER17_RS21080 0.68 -0.8 4,716,391 + HER17_RS21080 0.70 -0.2 4,716,434 + HER17_RS21080 0.75 +0.2 4,716,434 + HER17_RS21080 0.75 +0.3 4,716,434 + HER17_RS21080 0.75 -1.2 4,716,465 - HER17_RS21080 0.78 +0.5
Or see this region's nucleotide sequence