Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS18210 and HER17_RS18215 are separated by 25 nucleotides HER17_RS18215 and HER17_RS18220 are separated by 21 nucleotides HER17_RS18220 and HER17_RS18225 are separated by 218 nucleotides
HER17_RS18210: HER17_RS18210 - translation initiation factor IF-2, at 4,100,333 to 4,103,032
_RS18210
HER17_RS18215: HER17_RS18215 - transcription termination factor NusA, at 4,103,058 to 4,104,587
_RS18215
HER17_RS18220: HER17_RS18220 - ribosome maturation factor RimP, at 4,104,609 to 4,105,061
_RS18220
HER17_RS18225: HER17_RS18225 - tRNA-Met, at 4,105,280 to 4,105,356
_RS18225
Position (kb)
4103
4104
4105 Strain fitness (log2 ratio)
-2
-1
0
1 at 4103.050 kb on - strand at 4103.088 kb on - strand at 4103.088 kb on - strand at 4103.091 kb on - strand at 4103.091 kb on - strand at 4103.142 kb on - strand at 4105.410 kb on + strand at 4105.435 kb on - strand at 4105.435 kb on - strand at 4105.442 kb on + strand at 4105.478 kb on - strand at 4105.501 kb on + strand at 4105.501 kb on + strand at 4105.501 kb on + strand at 4105.511 kb on + strand at 4105.511 kb on + strand at 4105.542 kb on + strand at 4105.543 kb on - strand at 4105.587 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,103,050 - -0.3 4,103,088 - -1.1 4,103,088 - -0.7 4,103,091 - -0.0 4,103,091 - +0.5 4,103,142 - -0.9 4,105,410 + +0.5 4,105,435 - -0.2 4,105,435 - +0.2 4,105,442 + +0.3 4,105,478 - +0.8 4,105,501 + +0.2 4,105,501 + -0.2 4,105,501 + -0.9 4,105,511 + +0.7 4,105,511 + -0.3 4,105,542 + -2.7 4,105,543 - +0.0 4,105,587 - +0.1
Or see this region's nucleotide sequence