Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS17600

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,957,619	+		HER17_RS17590	0.89	+0.4
3,957,650	-				-0.0
3,957,716	+				-0.3
3,957,717	-				+0.1
3,957,765	+				-1.6
3,957,776	-				+0.0
3,957,780	-				-0.4
3,957,805	+				-0.4
3,957,806	-				-0.2
3,957,807	+				+0.3
3,957,808	-				+0.2
3,957,808	-				+0.6
3,957,846	-		HER17_RS17595	0.19	+0.3
3,958,014	+		HER17_RS17595	0.64	-0.1
3,958,098	+		HER17_RS17595	0.86	+0.4
3,958,099	-		HER17_RS17595	0.87	-0.6
3,958,117	+				+0.8
3,958,118	-				-0.1
3,958,121	+				+0.0
3,958,130	-				+0.2
3,958,130	-				+0.1
3,958,130	-				+0.2
3,958,130	-				+0.1
3,958,152	-				+0.3
3,958,171	+				-0.3
3,958,171	+				+0.2
3,958,171	+				+0.2
3,958,171	+				-1.3
3,958,172	-				+0.1
3,958,172	-				+0.0
3,958,172	-				+0.7
3,958,176	+				-0.0
3,958,176	+				+0.9
3,958,177	-				+0.2
3,958,294	+				+0.1
3,958,295	-				+0.9
3,958,295	-				-0.3
3,958,447	-				+1.2
3,958,522	+				-1.1
3,958,537	+				+0.4
3,958,537	+				-0.1
3,958,538	-				-0.2
3,958,568	+				-0.6
3,958,676	-				+0.2
3,958,676	-				+0.3
3,958,676	-				-1.5
3,958,711	+		HER17_RS17600	0.12	-0.1
3,958,727	+		HER17_RS17600	0.13	+0.6
3,958,745	+		HER17_RS17600	0.14	-0.2
3,958,745	+		HER17_RS17600	0.14	+0.1
3,958,746	-		HER17_RS17600	0.14	+0.3
3,958,790	-		HER17_RS17600	0.17	+0.4
3,958,821	-		HER17_RS17600	0.19	+0.2
3,958,821	-		HER17_RS17600	0.19	+0.4
3,958,856	+		HER17_RS17600	0.21	-0.5
3,958,859	+		HER17_RS17600	0.21	-1.0
3,958,860	-		HER17_RS17600	0.21	-1.0
3,958,860	-		HER17_RS17600	0.21	+0.3
3,958,860	-		HER17_RS17600	0.21	+0.2
3,958,872	-		HER17_RS17600	0.22	+0.0
3,958,872	-		HER17_RS17600	0.22	-0.5
3,958,872	-		HER17_RS17600	0.22	+0.6
3,958,872	-		HER17_RS17600	0.22	-0.0
3,958,872	-		HER17_RS17600	0.22	+0.4
3,958,878	+		HER17_RS17600	0.23	+0.9
3,958,892	+		HER17_RS17600	0.24	-0.3
3,958,893	-		HER17_RS17600	0.24	+0.3
3,958,893	-		HER17_RS17600	0.24	+0.2
3,958,961	-		HER17_RS17600	0.28	-1.1
3,958,975	+		HER17_RS17600	0.29	+0.3
3,958,975	+		HER17_RS17600	0.29	+0.8
3,958,975	+		HER17_RS17600	0.29	+1.0
3,959,032	+		HER17_RS17600	0.33	+0.5
3,959,033	-		HER17_RS17600	0.33	-0.4
3,959,033	-		HER17_RS17600	0.33	+0.1
3,959,033	-		HER17_RS17600	0.33	+0.9
3,959,033	-		HER17_RS17600	0.33	+0.4
3,959,038	+		HER17_RS17600	0.33	+0.8
3,959,038	+		HER17_RS17600	0.33	+0.7
3,959,038	+		HER17_RS17600	0.33	-0.3
3,959,038	+		HER17_RS17600	0.33	-0.7
3,959,039	-		HER17_RS17600	0.33	-0.2
3,959,039	-		HER17_RS17600	0.33	+0.4
3,959,039	-		HER17_RS17600	0.33	-0.8
3,959,039	-		HER17_RS17600	0.33	+0.8
3,959,039	-		HER17_RS17600	0.33	+0.0
3,959,039	-		HER17_RS17600	0.33	+0.4
3,959,042	+		HER17_RS17600	0.33	-0.2
3,959,042	+		HER17_RS17600	0.33	+0.0
3,959,043	-		HER17_RS17600	0.33	+0.2
3,959,043	-		HER17_RS17600	0.33	-0.6
3,959,043	-		HER17_RS17600	0.33	+1.2
3,959,043	-		HER17_RS17600	0.33	-0.6
3,959,043	-		HER17_RS17600	0.33	-0.3
3,959,088	-		HER17_RS17600	0.36	-0.5
3,959,098	+		HER17_RS17600	0.37	-0.1
3,959,098	+		HER17_RS17600	0.37	-0.0
3,959,099	-		HER17_RS17600	0.37	-0.7
3,959,099	-		HER17_RS17600	0.37	+0.1
3,959,099	-		HER17_RS17600	0.37	+0.3
3,959,099	-		HER17_RS17600	0.37	+0.2
3,959,123	+		HER17_RS17600	0.39	-0.7
3,959,123	+		HER17_RS17600	0.39	+0.9
3,959,123	+		HER17_RS17600	0.39	-0.3
3,959,123	+		HER17_RS17600	0.39	+0.2
3,959,123	+		HER17_RS17600	0.39	-0.0
3,959,124	-		HER17_RS17600	0.39	-0.3
3,959,124	-		HER17_RS17600	0.39	+0.4
3,959,124	-		HER17_RS17600	0.39	+0.4
3,959,124	-		HER17_RS17600	0.39	+0.6
3,959,125	+		HER17_RS17600	0.39	-0.3
3,959,125	+		HER17_RS17600	0.39	+0.6
3,959,126	-		HER17_RS17600	0.39	+0.6
3,959,126	-		HER17_RS17600	0.39	+0.5
3,959,237	-		HER17_RS17600	0.46	+0.3
3,959,261	+		HER17_RS17600	0.48	+0.1
3,959,261	+		HER17_RS17600	0.48	+0.1
3,959,261	+		HER17_RS17600	0.48	+0.2
3,959,261	+		HER17_RS17600	0.48	-0.8
3,959,261	+		HER17_RS17600	0.48	-0.4
3,959,261	+		HER17_RS17600	0.48	-0.5
3,959,261	+		HER17_RS17600	0.48	+0.5
3,959,261	+		HER17_RS17600	0.48	+0.5
3,959,261	+		HER17_RS17600	0.48	-1.3
3,959,262	-		HER17_RS17600	0.48	+0.3
3,959,262	-		HER17_RS17600	0.48	+0.3
3,959,262	-		HER17_RS17600	0.48	-0.0
3,959,262	-		HER17_RS17600	0.48	-0.7
3,959,262	-		HER17_RS17600	0.48	-0.3
3,959,262	-		HER17_RS17600	0.48	-0.1
3,959,309	+		HER17_RS17600	0.51	+1.7
3,959,309	+		HER17_RS17600	0.51	+0.4
3,959,310	-		HER17_RS17600	0.51	-0.2
3,959,310	-		HER17_RS17600	0.51	+0.3
3,959,310	-		HER17_RS17600	0.51	-0.8
3,959,310	-		HER17_RS17600	0.51	+1.1
3,959,310	-		HER17_RS17600	0.51	+0.4
3,959,310	-		HER17_RS17600	0.51	+0.1
3,959,310	-		HER17_RS17600	0.51	-0.4
3,959,310	-		HER17_RS17600	0.51	+0.0
3,959,363	-		HER17_RS17600	0.54	+0.8
3,959,374	+		HER17_RS17600	0.55	+1.0
3,959,374	+		HER17_RS17600	0.55	-0.1
3,959,374	+		HER17_RS17600	0.55	+0.2
3,959,374	+		HER17_RS17600	0.55	-0.8
3,959,375	-		HER17_RS17600	0.55	+0.1
3,959,375	-		HER17_RS17600	0.55	-0.1
3,959,375	-		HER17_RS17600	0.55	+1.1
3,959,377	+		HER17_RS17600	0.55	+1.8
3,959,378	-		HER17_RS17600	0.55	-0.8
3,959,378	-		HER17_RS17600	0.55	-0.3
3,959,410	+		HER17_RS17600	0.57	+0.4
3,959,410	+		HER17_RS17600	0.57	+0.9
3,959,461	-		HER17_RS17600	0.61	-0.2
3,959,463	+		HER17_RS17600	0.61	-0.0
3,959,463	+		HER17_RS17600	0.61	-0.1
3,959,463	+		HER17_RS17600	0.61	+0.3
3,959,464	-		HER17_RS17600	0.61	+0.3
3,959,464	-		HER17_RS17600	0.61	+0.0
3,959,464	-		HER17_RS17600	0.61	-0.3
3,959,464	-		HER17_RS17600	0.61	+0.3
3,959,479	-		HER17_RS17600	0.62	-0.2
3,959,553	+		HER17_RS17600	0.67	-0.1
3,959,554	-		HER17_RS17600	0.67	-0.2
3,959,554	-		HER17_RS17600	0.67	-0.1
3,959,554	-		HER17_RS17600	0.67	-1.0
3,959,575	+		HER17_RS17600	0.68	+0.7
3,959,579	+		HER17_RS17600	0.69	-0.2
3,959,579	+		HER17_RS17600	0.69	+0.5
3,959,580	-		HER17_RS17600	0.69	+0.8
3,959,580	-		HER17_RS17600	0.69	-0.4
3,959,580	-		HER17_RS17600	0.69	-2.0
3,959,580	-		HER17_RS17600	0.69	+0.5
3,959,582	+		HER17_RS17600	0.69	+0.1
3,959,583	-		HER17_RS17600	0.69	-0.3
3,959,600	+		HER17_RS17600	0.70	-1.8
3,959,600	+		HER17_RS17600	0.70	+0.7
3,959,600	+		HER17_RS17600	0.70	-0.0
3,959,600	+		HER17_RS17600	0.70	+0.2
3,959,602	+		HER17_RS17600	0.70	-0.1
3,959,602	+		HER17_RS17600	0.70	+0.0
3,959,603	-		HER17_RS17600	0.70	+0.3
3,959,658	-		HER17_RS17600	0.74	+0.5
3,959,658	-		HER17_RS17600	0.74	-0.1
3,959,658	-		HER17_RS17600	0.74	-0.4
3,959,837	+		HER17_RS17600	0.85	-0.7
3,959,837	+		HER17_RS17600	0.85	+0.3
3,959,837	+		HER17_RS17600	0.85	-0.2
3,959,841	-		HER17_RS17600	0.86	+0.0
3,959,841	-		HER17_RS17600	0.86	-0.3
3,959,866	+		HER17_RS17600	0.87	+0.7
3,959,867	-		HER17_RS17600	0.87	+0.2
3,959,902	+		HER17_RS17600	0.90	-0.0
3,959,903	-		HER17_RS17600	0.90	-0.5
3,959,903	-		HER17_RS17600	0.90	-0.0
3,959,931	+				+0.4
3,959,931	+				-0.3
3,959,931	+				-0.1
3,959,931	+				+0.0
3,960,028	+				+0.2
3,960,028	+				-1.7
3,960,128	+				-0.2
3,960,128	+				-0.1
3,960,128	+				-0.4
3,960,128	+				+0.4
3,960,128	+				+0.3
3,960,129	-				+0.2
3,960,129	-				-0.7
3,960,129	-				-0.6
3,960,135	+				+0.2
3,960,136	-				+1.1
3,960,142	+				+0.3
3,960,149	-				-1.5
3,960,165	+				+0.4
3,960,165	+				+0.8
3,960,166	-				-1.3
3,960,234	+				-0.2
3,960,235	-				-0.5
3,960,296	-				-0.4
3,960,302	+				+0.0
3,960,309	+				-0.6
3,960,358	+				-0.4
3,960,375	+				-0.4
3,960,376	-				+0.2
3,960,452	+				+0.0
3,960,494	+				-0.5
3,960,494	+				+0.4
3,960,494	+				+0.4
3,960,495	-				-0.2
3,960,495	-				+0.9
3,960,495	-				+0.7
3,960,495	-				+1.5
3,960,495	-				-0.1
3,960,497	+				-0.1
3,960,497	+				-0.4
3,960,497	+				+1.0
3,960,498	-				-0.3
3,960,498	-				-0.1
3,960,498	-				-0.6
3,960,618	-		HER17_RS17605	0.17	+0.2
3,960,644	+		HER17_RS17605	0.19	+0.4
3,960,644	+		HER17_RS17605	0.19	-0.8
3,960,644	+		HER17_RS17605	0.19	-1.0
3,960,645	-		HER17_RS17605	0.19	+0.6
3,960,645	-		HER17_RS17605	0.19	-0.1
3,960,645	-		HER17_RS17605	0.19	+0.5
3,960,645	-		HER17_RS17605	0.19	-0.4
3,960,645	-		HER17_RS17605	0.19	-0.6
3,960,721	-		HER17_RS17605	0.27	+0.7
3,960,721	-		HER17_RS17605	0.27	-0.1
3,960,753	+		HER17_RS17605	0.30	+0.0
3,960,753	+		HER17_RS17605	0.30	-0.2
3,960,753	+		HER17_RS17605	0.30	-0.0
3,960,754	-		HER17_RS17605	0.30	-0.6
3,960,754	-		HER17_RS17605	0.30	-0.5
3,960,754	-		HER17_RS17605	0.30	-0.2
3,960,754	-		HER17_RS17605	0.30	+0.2
3,960,754	-		HER17_RS17605	0.30	-0.8
3,960,957	+		HER17_RS17605	0.50	+0.5
3,960,957	+		HER17_RS17605	0.50	-0.8
3,960,957	+		HER17_RS17605	0.50	-0.6
3,960,958	-		HER17_RS17605	0.50	+0.2
3,960,958	-		HER17_RS17605	0.50	+0.2
3,960,959	+		HER17_RS17605	0.50	+0.4
3,960,959	+		HER17_RS17605	0.50	-0.3
3,960,960	-		HER17_RS17605	0.50	-1.3
3,960,960	-		HER17_RS17605	0.50	-0.7
3,960,960	-		HER17_RS17605	0.50	+0.1
3,960,960	-		HER17_RS17605	0.50	+0.6
3,960,960	-		HER17_RS17605	0.50	+1.2
3,960,960	-		HER17_RS17605	0.50	+0.1
3,960,983	-		HER17_RS17605	0.53	-1.2
3,961,050	+		HER17_RS17605	0.59	+0.3
3,961,050	+		HER17_RS17605	0.59	+0.1