Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS15950

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHER17_RS15945 and HER17_RS15950 are separated by 68 nucleotidesHER17_RS15950 and HER17_RS15955 are separated by 24 nucleotidesHER17_RS15955 and HER17_RS15960 are separated by 110 nucleotides HER17_RS15945: HER17_RS15945 - thiamine-phosphate kinase, at 3,581,418 to 3,582,398 _RS15945 HER17_RS15950: HER17_RS15950 - transcription antitermination factor NusB, at 3,582,467 to 3,582,886 _RS15950 HER17_RS15955: HER17_RS15955 - 6,7-dimethyl-8-ribityllumazine synthase, at 3,582,911 to 3,583,387 _RS15955 HER17_RS15960: HER17_RS15960 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 3,583,498 to 3,584,634 _RS15960 Position (kb) 3582 3583Strain fitness (log2 ratio) -1 0 1at 3583.485 kb on - strandat 3583.485 kb on - strandat 3583.485 kb on - strandat 3583.485 kb on - strandat 3583.488 kb on + strandat 3583.489 kb on - strandat 3583.489 kb on - strandat 3583.489 kb on - strandat 3583.489 kb on - strandat 3583.489 kb on - strandat 3583.492 kb on + strandat 3583.492 kb on + strandat 3583.492 kb on + strandat 3583.493 kb on - strandat 3583.507 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,583,485 - -0.6
3,583,485 - -0.0
3,583,485 - +1.4
3,583,485 - +0.0
3,583,488 + +0.2
3,583,489 - -0.2
3,583,489 - -0.2
3,583,489 - +0.1
3,583,489 - +0.2
3,583,489 - -0.4
3,583,492 + -0.3
3,583,492 + -0.8
3,583,492 + +0.6
3,583,493 - -0.1
3,583,507 - -0.4

Or see this region's nucleotide sequence