Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HER17_RS15945 and HER17_RS15950 are separated by 68 nucleotides HER17_RS15950 and HER17_RS15955 are separated by 24 nucleotides HER17_RS15955 and HER17_RS15960 are separated by 110 nucleotides
HER17_RS15945: HER17_RS15945 - thiamine-phosphate kinase, at 3,581,418 to 3,582,398
_RS15945
HER17_RS15950: HER17_RS15950 - transcription antitermination factor NusB, at 3,582,467 to 3,582,886
_RS15950
HER17_RS15955: HER17_RS15955 - 6,7-dimethyl-8-ribityllumazine synthase, at 3,582,911 to 3,583,387
_RS15955
HER17_RS15960: HER17_RS15960 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 3,583,498 to 3,584,634
_RS15960
Position (kb)
3582
3583 Strain fitness (log2 ratio)
-1
0
1 at 3583.485 kb on - strand at 3583.485 kb on - strand at 3583.485 kb on - strand at 3583.485 kb on - strand at 3583.488 kb on + strand at 3583.489 kb on - strand at 3583.489 kb on - strand at 3583.489 kb on - strand at 3583.489 kb on - strand at 3583.489 kb on - strand at 3583.492 kb on + strand at 3583.492 kb on + strand at 3583.492 kb on + strand at 3583.493 kb on - strand at 3583.507 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 3,583,485 - -0.6 3,583,485 - -0.0 3,583,485 - +1.4 3,583,485 - +0.0 3,583,488 + +0.2 3,583,489 - -0.2 3,583,489 - -0.2 3,583,489 - +0.1 3,583,489 - +0.2 3,583,489 - -0.4 3,583,492 + -0.3 3,583,492 + -0.8 3,583,492 + +0.6 3,583,493 - -0.1 3,583,507 - -0.4
Or see this region's nucleotide sequence