Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS15900

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,571,716	-		HER17_RS15895	0.31	+0.8
3,571,716	-		HER17_RS15895	0.31	-0.7
3,571,737	+		HER17_RS15895	0.34	+0.0
3,571,792	-		HER17_RS15895	0.40	-0.6
3,571,804	-		HER17_RS15895	0.41	-1.0
3,571,805	+		HER17_RS15895	0.41	-0.6
3,571,812	+		HER17_RS15895	0.42	-1.8
3,571,813	-		HER17_RS15895	0.42	-0.5
3,571,965	+		HER17_RS15895	0.59	-0.8
3,572,068	-		HER17_RS15895	0.71	+0.0
3,572,127	-		HER17_RS15895	0.77	-1.4
3,572,127	-		HER17_RS15895	0.77	-0.2
3,572,168	-		HER17_RS15895	0.82	-1.0
3,572,171	+		HER17_RS15895	0.82	-0.8
3,572,172	-		HER17_RS15895	0.82	+0.4
3,572,317	-				-0.7
3,572,342	-				-0.2
3,572,342	-				-0.4
3,572,342	-				+0.2
3,572,350	+				-0.2
3,572,351	-				+0.5
3,572,351	-				-0.8
3,572,421	+				-0.3
3,572,421	+				-0.2
3,572,422	-				-0.2
3,572,459	+				+0.0
3,572,465	-				+1.2
3,572,470	+				-1.6
3,572,486	+				-0.2
3,572,503	-				+0.1
3,572,558	+				-2.4
3,572,602	+				-0.6
3,572,602	+				-0.4
3,572,603	-				-2.1
3,572,615	+				-0.4
3,572,643	+		HER17_RS15900	0.11	+1.6
3,572,656	-		HER17_RS15900	0.12	+0.4
3,572,656	-		HER17_RS15900	0.12	-0.3
3,572,660	-		HER17_RS15900	0.12	-2.5
3,572,660	-		HER17_RS15900	0.12	-0.3
3,572,676	+		HER17_RS15900	0.14	-0.3
3,572,677	-		HER17_RS15900	0.14	-1.1
3,572,937	+		HER17_RS15900	0.33	-0.1
3,573,024	+		HER17_RS15900	0.39	+0.6
3,573,025	-		HER17_RS15900	0.39	-1.6
3,573,025	-		HER17_RS15900	0.39	-2.0
3,573,033	+		HER17_RS15900	0.40	-0.8
3,573,033	+		HER17_RS15900	0.40	+0.0
3,573,034	-		HER17_RS15900	0.40	-0.4
3,573,034	-		HER17_RS15900	0.40	-1.1
3,573,113	+		HER17_RS15900	0.46	-0.8
3,573,113	+		HER17_RS15900	0.46	-1.2
3,573,154	-		HER17_RS15900	0.49	-0.7
3,573,165	+		HER17_RS15900	0.49	-0.5
3,573,166	-		HER17_RS15900	0.49	-0.0
3,573,171	-		HER17_RS15900	0.50	-2.5
3,573,171	-		HER17_RS15900	0.50	+0.6
3,573,248	-		HER17_RS15900	0.55	-0.6
3,573,291	+		HER17_RS15900	0.59	-0.1
3,573,291	+		HER17_RS15900	0.59	+0.4
3,573,291	+		HER17_RS15900	0.59	-3.1
3,573,292	-		HER17_RS15900	0.59	-0.8
3,573,299	-		HER17_RS15900	0.59	-2.3
3,573,299	-		HER17_RS15900	0.59	-2.1
3,573,299	-		HER17_RS15900	0.59	-0.6
3,573,299	-		HER17_RS15900	0.59	-0.8
3,573,299	-		HER17_RS15900	0.59	-0.8
3,573,405	+		HER17_RS15900	0.67	-0.8
3,573,406	-		HER17_RS15900	0.67	-0.6
3,573,416	+		HER17_RS15900	0.68	-0.8
3,573,416	+		HER17_RS15900	0.68	-0.4
3,573,416	+		HER17_RS15900	0.68	-3.0
3,573,416	+		HER17_RS15900	0.68	+1.0
3,573,416	+		HER17_RS15900	0.68	-1.0
3,573,417	-		HER17_RS15900	0.68	-0.2
3,573,422	+		HER17_RS15900	0.68	-0.4
3,573,422	+		HER17_RS15900	0.68	-0.5
3,573,423	-		HER17_RS15900	0.68	-0.0
3,573,423	-		HER17_RS15900	0.68	+0.5
3,573,423	-		HER17_RS15900	0.68	+0.2
3,573,423	-		HER17_RS15900	0.68	-2.4
3,573,493	+		HER17_RS15900	0.73	-0.8
3,573,494	-		HER17_RS15900	0.73	-0.1
3,573,495	+		HER17_RS15900	0.74	-0.8
3,573,496	-		HER17_RS15900	0.74	-0.4
3,573,496	-		HER17_RS15900	0.74	+0.4
3,573,496	-		HER17_RS15900	0.74	-0.6
3,573,496	-		HER17_RS15900	0.74	+0.6
3,573,518	-		HER17_RS15900	0.75	+0.4
3,573,584	-		HER17_RS15900	0.80	+0.2
3,573,599	+		HER17_RS15900	0.81	-1.4
3,573,603	+		HER17_RS15900	0.81	-0.2
3,573,603	+		HER17_RS15900	0.81	-1.2
3,573,604	-		HER17_RS15900	0.82	+0.1
3,573,604	-		HER17_RS15900	0.82	-0.6
3,573,604	-		HER17_RS15900	0.82	-1.5
3,573,668	-		HER17_RS15900	0.86	-0.6
3,573,687	+		HER17_RS15900	0.88	+0.2
3,573,688	-		HER17_RS15900	0.88	-0.1
3,573,688	-		HER17_RS15900	0.88	+0.4
3,573,688	-		HER17_RS15900	0.88	+0.1
3,573,701	+		HER17_RS15900	0.89	-0.2
3,573,722	+				+0.7
3,573,723	-				-1.1
3,573,734	+				+0.2
3,573,790	+				+0.4
3,573,790	+				+2.1
3,573,791	-				+0.4
3,573,791	-				-0.3
3,573,791	-				-1.3
3,573,807	+				-0.1
3,573,808	-				-0.7
3,573,830	+				+0.1
3,573,853	+				-0.3
3,573,854	-				+0.6
3,573,857	+				+0.6
3,573,857	+				-0.2
3,573,858	-				+0.1
3,573,885	+				+0.4
3,573,909	+				+0.4
3,573,909	+				+0.9
3,573,910	-				-0.6
3,574,129	-		HER17_RS15905	0.44	-0.4
3,574,167	-		HER17_RS15905	0.52	-0.8
3,574,402	+				-0.6
3,574,403	-				+0.9
3,574,437	+				+0.7
3,574,437	+				+0.8
3,574,437	+				+0.7
3,574,438	-				-0.2
3,574,438	-				+0.1
3,574,438	-				+1.1
3,574,440	+				+0.7
3,574,504	-				+0.1
3,574,516	+				+0.3
3,574,517	-				+0.7
3,574,546	+				+0.4
3,574,546	+				-0.1
3,574,546	+				+0.2
3,574,546	+				+0.6
3,574,547	-				+0.3
3,574,547	-				+0.4
3,574,578	+				-0.7
3,574,647	+				+0.3
3,574,738	+		HER17_RS15910	0.16	-0.2
3,574,738	+		HER17_RS15910	0.16	+0.3
3,574,804	-		HER17_RS15910	0.23	-0.1
3,574,804	-		HER17_RS15910	0.23	+0.0