Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS15505

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,475,618	+		HER17_RS15495	0.70	-0.2
3,475,618	+		HER17_RS15495	0.70	-0.3
3,475,619	-		HER17_RS15495	0.70	+0.4
3,475,619	-		HER17_RS15495	0.70	+0.3
3,475,619	-		HER17_RS15495	0.70	-0.2
3,475,619	-		HER17_RS15495	0.70	+0.7
3,475,619	-		HER17_RS15495	0.70	+0.7
3,475,755	+		HER17_RS15495	0.88	-0.0
3,475,756	-		HER17_RS15495	0.89	-0.2
3,475,758	+		HER17_RS15495	0.89	+0.0
3,475,759	-		HER17_RS15495	0.89	-0.0
3,475,866	-		HER17_RS15500	0.15	-0.2
3,475,875	-		HER17_RS15500	0.16	-0.0
3,475,898	+		HER17_RS15500	0.20	-0.0
3,475,898	+		HER17_RS15500	0.20	-0.2
3,475,901	+		HER17_RS15500	0.20	+0.2
3,475,901	+		HER17_RS15500	0.20	-0.0
3,475,901	+		HER17_RS15500	0.20	+0.9
3,475,902	-		HER17_RS15500	0.20	+0.7
3,475,902	-		HER17_RS15500	0.20	+1.5
3,475,902	-		HER17_RS15500	0.20	+0.2
3,475,964	+		HER17_RS15500	0.29	-0.1
3,476,022	+		HER17_RS15500	0.38	+0.2
3,476,022	+		HER17_RS15500	0.38	+0.5
3,476,023	-		HER17_RS15500	0.38	-1.3
3,476,233	+		HER17_RS15500	0.69	-0.1
3,476,234	-		HER17_RS15500	0.69	-0.4
3,476,234	-		HER17_RS15500	0.69	+0.3
3,476,234	-		HER17_RS15500	0.69	+0.7
3,476,234	-		HER17_RS15500	0.69	+0.4
3,476,234	-		HER17_RS15500	0.69	-0.3
3,476,265	+		HER17_RS15500	0.73	+1.0
3,476,265	+		HER17_RS15500	0.73	-0.2
3,476,265	+		HER17_RS15500	0.73	-0.3
3,476,265	+		HER17_RS15500	0.73	-0.9
3,476,266	-		HER17_RS15500	0.74	-0.3
3,476,266	-		HER17_RS15500	0.74	-1.4
3,476,269	+		HER17_RS15500	0.74	+1.0
3,476,329	+		HER17_RS15500	0.83	-0.6
3,476,329	+		HER17_RS15500	0.83	+0.0
3,476,330	-		HER17_RS15500	0.83	+0.2
3,476,330	-		HER17_RS15500	0.83	+0.1
3,476,330	-		HER17_RS15500	0.83	-0.2
3,476,426	+				-0.5
3,476,426	+				-0.0
3,476,426	+				+0.1
3,476,427	-				+0.4
3,476,427	-				-0.6
3,476,443	+				+0.4
3,476,444	-				-0.4
3,476,446	+				-0.9
3,476,450	+				-0.1
3,476,450	+				-0.0
3,476,451	-				-0.6
3,476,451	-				+0.0
3,476,451	-				+2.2
3,476,463	+				+2.0
3,476,467	+				+0.8
3,476,474	-				+0.1
3,476,624	-		HER17_RS15505	0.19	-0.3
3,476,700	-		HER17_RS15505	0.29	-0.0
3,476,710	+		HER17_RS15505	0.31	-0.1
3,476,713	+		HER17_RS15505	0.31	+0.0
3,476,714	-		HER17_RS15505	0.31	-0.6
3,476,732	+		HER17_RS15505	0.33	-0.1
3,476,817	+		HER17_RS15505	0.44	-0.1
3,476,817	+		HER17_RS15505	0.44	+0.1
3,476,817	+		HER17_RS15505	0.44	-0.3
3,476,818	-		HER17_RS15505	0.45	+0.3
3,476,818	-		HER17_RS15505	0.45	-0.2
3,476,820	+		HER17_RS15505	0.45	+1.1
3,476,820	+		HER17_RS15505	0.45	+0.6
3,476,821	-		HER17_RS15505	0.45	+0.1
3,476,821	-		HER17_RS15505	0.45	-0.3
3,476,854	+		HER17_RS15505	0.49	+0.6
3,476,909	+		HER17_RS15505	0.56	+0.4
3,476,910	-		HER17_RS15505	0.57	-0.2
3,476,924	+		HER17_RS15505	0.58	-1.0
3,476,925	-		HER17_RS15505	0.58	-1.4
3,476,965	-		HER17_RS15505	0.64	-0.6
3,477,022	+		HER17_RS15505	0.71	-0.3
3,477,080	-		HER17_RS15505	0.79	-0.2
3,477,153	+		HER17_RS15505	0.88	-0.5
3,477,231	+				-0.1
3,477,231	+				-0.7
3,477,232	-				+0.4
3,477,232	-				+0.2
3,477,262	+				-0.6
3,477,291	+				+0.0
3,477,291	+				+0.6
3,477,292	-				-2.1
3,477,292	-				-0.4
3,477,315	+				+0.0
3,477,316	-				+0.5
3,477,316	-				-1.9
3,477,339	+				+0.5
3,477,340	-				+1.0
3,477,349	+				-0.7
3,477,358	+				+0.0
3,477,358	+				-0.2
3,477,445	-		HER17_RS15510	0.11	+0.7
3,477,445	-		HER17_RS15510	0.11	-0.6
3,477,513	+		HER17_RS15510	0.18	-0.2
3,477,603	+		HER17_RS15510	0.29	+0.0
3,477,604	-		HER17_RS15510	0.29	+0.2
3,477,843	-		HER17_RS15510	0.57	-0.1
3,477,973	+		HER17_RS15510	0.72	-0.8
3,477,973	+		HER17_RS15510	0.72	-0.8
3,477,974	-		HER17_RS15510	0.72	-0.3
3,478,072	+		HER17_RS15510	0.83	-0.5
3,478,072	+		HER17_RS15510	0.83	-0.1
3,478,073	-		HER17_RS15510	0.84	+0.1
3,478,073	-		HER17_RS15510	0.84	-0.5
3,478,073	-		HER17_RS15510	0.84	-2.1