Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS13830

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
3,097,490	+		HER17_RS13825	0.35	+0.2
3,097,491	-		HER17_RS13825	0.35	-0.8
3,097,491	-		HER17_RS13825	0.35	+0.8
3,097,566	+		HER17_RS13825	0.41	+0.2
3,097,620	+		HER17_RS13825	0.45	-0.3
3,097,620	+		HER17_RS13825	0.45	-0.2
3,097,620	+		HER17_RS13825	0.45	-0.5
3,097,621	-		HER17_RS13825	0.45	-0.9
3,097,625	+		HER17_RS13825	0.46	+0.6
3,097,625	+		HER17_RS13825	0.46	+0.2
3,097,636	-		HER17_RS13825	0.47	+0.6
3,097,690	-		HER17_RS13825	0.51	+0.6
3,097,737	+		HER17_RS13825	0.55	-0.5
3,097,738	-		HER17_RS13825	0.55	-0.1
3,097,738	-		HER17_RS13825	0.55	+0.5
3,097,749	-		HER17_RS13825	0.56	+0.4
3,097,762	+		HER17_RS13825	0.57	+0.4
3,097,763	-		HER17_RS13825	0.57	+0.2
3,097,765	+		HER17_RS13825	0.57	+1.1
3,097,765	+		HER17_RS13825	0.57	-0.8
3,097,765	+		HER17_RS13825	0.57	-0.0
3,097,765	+		HER17_RS13825	0.57	-0.4
3,097,765	+		HER17_RS13825	0.57	-0.8
3,097,766	-		HER17_RS13825	0.57	+0.3
3,097,872	+		HER17_RS13825	0.66	-0.3
3,097,932	+		HER17_RS13825	0.71	+0.6
3,097,932	+		HER17_RS13825	0.71	+0.6
3,097,933	-		HER17_RS13825	0.71	-0.7
3,097,933	-		HER17_RS13825	0.71	+0.6
3,097,933	-		HER17_RS13825	0.71	+0.2
3,097,986	+		HER17_RS13825	0.75	+0.1
3,097,987	-		HER17_RS13825	0.75	-0.1
3,098,103	+		HER17_RS13825	0.84	+0.4
3,098,104	-		HER17_RS13825	0.84	+0.1
3,098,173	-				+0.8
3,098,349	+				-1.1
3,098,350	-				-1.1
3,098,350	-				-1.1
3,098,431	+				+0.6
3,098,432	-				+1.1
3,098,444	-				-1.8
3,098,444	-				-0.0
3,098,444	-				+0.5
3,098,446	-				+0.5
3,098,463	+				-0.4
3,098,463	+				+0.6
3,098,463	+				-0.2
3,098,463	+				+0.7
3,098,463	+				-0.8
3,098,464	-				-0.6
3,098,464	-				-0.4
3,098,464	-				+2.1
3,098,464	-				+0.9
3,098,464	-				-0.4
3,098,464	-				-0.0
3,098,541	+				-1.4
3,098,564	-				+1.0
3,098,564	-				+0.7
3,098,616	-		HER17_RS13830	0.13	+1.5
3,098,712	+		HER17_RS13830	0.21	+0.3
3,098,712	+		HER17_RS13830	0.21	+0.3
3,098,713	-		HER17_RS13830	0.21	+0.4
3,098,713	-		HER17_RS13830	0.21	+0.3
3,098,720	+		HER17_RS13830	0.21	-1.0
3,098,724	+		HER17_RS13830	0.22	+0.3
3,098,724	+		HER17_RS13830	0.22	+0.0
3,098,808	+		HER17_RS13830	0.29	-0.9
3,098,808	+		HER17_RS13830	0.29	-0.4
3,098,808	+		HER17_RS13830	0.29	+0.0
3,098,809	-		HER17_RS13830	0.29	+0.5
3,098,809	-		HER17_RS13830	0.29	+0.3
3,098,809	-		HER17_RS13830	0.29	+0.8
3,098,809	-		HER17_RS13830	0.29	-0.2
3,098,949	-		HER17_RS13830	0.40	+0.4
3,099,082	+		HER17_RS13830	0.52	-0.7
3,099,082	+		HER17_RS13830	0.52	+0.7
3,099,082	+		HER17_RS13830	0.52	+2.3
3,099,082	+		HER17_RS13830	0.52	+0.3
3,099,082	+		HER17_RS13830	0.52	+0.3
3,099,082	+		HER17_RS13830	0.52	-0.5
3,099,083	-		HER17_RS13830	0.52	-0.4
3,099,083	-		HER17_RS13830	0.52	-0.7
3,099,083	-		HER17_RS13830	0.52	+1.6
3,099,083	-		HER17_RS13830	0.52	+0.1
3,099,083	-		HER17_RS13830	0.52	+0.5
3,099,083	-		HER17_RS13830	0.52	+0.9
3,099,083	-		HER17_RS13830	0.52	-0.3
3,099,085	+		HER17_RS13830	0.52	-0.3
3,099,085	+		HER17_RS13830	0.52	+0.5
3,099,085	+		HER17_RS13830	0.52	+0.5
3,099,085	+		HER17_RS13830	0.52	-0.9
3,099,086	-		HER17_RS13830	0.52	+0.9
3,099,086	-		HER17_RS13830	0.52	-1.0
3,099,139	+		HER17_RS13830	0.56	-1.0
3,099,139	+		HER17_RS13830	0.56	+0.1
3,099,139	+		HER17_RS13830	0.56	+0.1
3,099,139	+		HER17_RS13830	0.56	-0.1
3,099,139	+		HER17_RS13830	0.56	-0.6
3,099,139	+		HER17_RS13830	0.56	-0.2
3,099,139	+		HER17_RS13830	0.56	-0.0
3,099,139	+		HER17_RS13830	0.56	+0.3
3,099,140	-		HER17_RS13830	0.56	+0.3
3,099,140	-		HER17_RS13830	0.56	-0.9
3,099,140	-		HER17_RS13830	0.56	-0.5
3,099,140	-		HER17_RS13830	0.56	-0.7
3,099,140	-		HER17_RS13830	0.56	+0.5
3,099,142	+		HER17_RS13830	0.56	-0.6
3,099,143	-		HER17_RS13830	0.57	+0.1
3,099,143	-		HER17_RS13830	0.57	+0.7
3,099,162	+		HER17_RS13830	0.58	-0.5
3,099,162	+		HER17_RS13830	0.58	-0.1
3,099,185	-		HER17_RS13830	0.60	-0.4
3,099,185	-		HER17_RS13830	0.60	-1.1
3,099,185	-		HER17_RS13830	0.60	-0.3
3,099,193	+		HER17_RS13830	0.61	-0.4
3,099,193	+		HER17_RS13830	0.61	-0.3
3,099,194	-		HER17_RS13830	0.61	+1.1
3,099,217	+		HER17_RS13830	0.63	-0.2
3,099,313	-		HER17_RS13830	0.71	-0.3
3,099,387	-		HER17_RS13830	0.77	+0.1
3,099,503	+		HER17_RS13830	0.87	-0.7
3,099,504	-		HER17_RS13830	0.87	+0.4
3,099,504	-		HER17_RS13830	0.87	-0.1
3,099,506	+		HER17_RS13830	0.87	-0.9
3,099,507	-		HER17_RS13830	0.87	+0.5
3,099,520	+		HER17_RS13830	0.88	+2.4
3,099,520	+		HER17_RS13830	0.88	+0.8
3,099,521	-		HER17_RS13830	0.88	-0.1
3,099,668	+				-0.4
3,099,669	-				-0.1
3,099,793	+				+0.7
3,099,793	+				+0.5
3,099,793	+				+0.1
3,099,794	-				+0.5
3,099,797	+				-0.4
3,099,797	+				-0.0
3,099,797	+				+0.7
3,099,798	-				+0.2
3,099,826	+				+0.1
3,099,826	+				+0.2
3,099,849	+				-0.7
3,099,868	+				+0.4
3,099,869	-				-0.3
3,099,869	-				+0.2
3,099,874	-				+1.0
3,099,874	-				-0.6
3,099,879	+				-0.2
3,099,879	+				+0.2
3,099,915	+				-1.3
3,099,916	-				+0.8
3,099,931	+				-0.4
3,099,931	+				-0.3
3,099,955	+		HER17_RS13835	0.11	+0.2
3,099,956	-		HER17_RS13835	0.11	+0.5
3,099,993	+		HER17_RS13835	0.17	-0.2
3,100,016	+		HER17_RS13835	0.21	-0.2
3,100,035	+		HER17_RS13835	0.24	+0.9
3,100,035	+		HER17_RS13835	0.24	+0.2
3,100,036	-		HER17_RS13835	0.24	+0.4
3,100,036	-		HER17_RS13835	0.24	-0.1
3,100,038	+		HER17_RS13835	0.24	-0.0
3,100,069	+		HER17_RS13835	0.29	+1.0
3,100,105	-		HER17_RS13835	0.35	+0.6
3,100,133	-		HER17_RS13835	0.39	+1.1
3,100,208	-		HER17_RS13835	0.51	-0.6
3,100,209	+		HER17_RS13835	0.51	-0.1
3,100,209	+		HER17_RS13835	0.51	-0.1
3,100,209	+		HER17_RS13835	0.51	+0.7
3,100,210	-		HER17_RS13835	0.51	-0.7
3,100,210	-		HER17_RS13835	0.51	+1.5
3,100,210	-		HER17_RS13835	0.51	+0.5
3,100,210	-		HER17_RS13835	0.51	-1.5
3,100,251	+		HER17_RS13835	0.58	+2.6
3,100,251	+		HER17_RS13835	0.58	+0.3
3,100,252	-		HER17_RS13835	0.58	+0.5
3,100,252	-		HER17_RS13835	0.58	+0.1
3,100,287	+		HER17_RS13835	0.64	+0.5
3,100,386	+		HER17_RS13835	0.79	-0.1
3,100,432	+		HER17_RS13835	0.86	+0.2
3,100,433	-		HER17_RS13835	0.86	+0.2
3,100,455	+				-0.0
3,100,476	-				+0.1
3,100,476	-				-0.9
3,100,529	+				+0.6
3,100,530	-				+0.6
3,100,530	-				-0.7
3,100,533	+				+1.0
3,100,533	+				+0.2
3,100,533	+				-0.3
3,100,533	+				+0.1
3,100,533	+				-0.0
3,100,533	+				-0.3
3,100,534	-				+0.1
3,100,534	-				-0.3