Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS11350

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,525,647	-				+0.6
2,525,650	+				-0.9
2,525,650	+				+0.4
2,525,654	-				+0.4
2,525,658	+				+0.4
2,525,658	+				+1.0
2,525,658	+				-0.2
2,525,658	+				-0.7
2,525,733	+				+0.2
2,525,757	+				+0.0
2,525,770	+				+0.1
2,525,822	+				-0.3
2,525,823	-				+0.2
2,525,823	-				-1.1
2,525,823	-				+0.6
2,525,857	+				+0.4
2,525,857	+				+0.0
2,525,857	+				+0.4
2,525,857	+				+0.6
2,525,859	+				-0.5
2,525,887	+				-1.5
2,525,912	-				-0.3
2,525,912	-				+0.9
2,525,970	+		HER17_RS11345	0.14	-0.4
2,525,978	-		HER17_RS11345	0.15	+0.0
2,526,035	-		HER17_RS11345	0.25	-0.1
2,526,035	-		HER17_RS11345	0.25	-0.8
2,526,080	+		HER17_RS11345	0.33	+0.1
2,526,080	+		HER17_RS11345	0.33	+0.1
2,526,081	-		HER17_RS11345	0.33	+0.0
2,526,082	+		HER17_RS11345	0.33	+1.5
2,526,083	-		HER17_RS11345	0.34	+0.1
2,526,112	+		HER17_RS11345	0.39	+0.2
2,526,112	+		HER17_RS11345	0.39	-0.1
2,526,113	-		HER17_RS11345	0.39	-0.1
2,526,120	+		HER17_RS11345	0.40	+0.1
2,526,120	+		HER17_RS11345	0.40	-0.5
2,526,214	-		HER17_RS11345	0.56	+0.7
2,526,286	+		HER17_RS11345	0.69	+1.5
2,526,309	+		HER17_RS11345	0.73	+0.7
2,526,310	-		HER17_RS11345	0.73	-0.9
2,526,310	-		HER17_RS11345	0.73	-1.0
2,526,328	+		HER17_RS11345	0.76	+0.9
2,526,329	-		HER17_RS11345	0.76	+0.9
2,526,359	+		HER17_RS11345	0.82	-0.7
2,526,359	+		HER17_RS11345	0.82	+1.0
2,526,428	-				-1.6
2,526,452	+				+0.2
2,526,475	+				+0.7
2,526,476	-				+0.1
2,526,476	-				+0.4
2,526,476	-				-0.5
2,526,476	-				+0.2
2,526,476	-				-0.9
2,526,493	-				+0.2
2,526,510	-				-0.0
2,526,510	-				-1.1
2,526,518	-				-0.0
2,526,568	+				+1.0
2,526,588	+				-0.1
2,526,589	-				-0.4
2,526,589	-				+0.6
2,526,589	-				+0.4
2,526,589	-				+0.4
2,526,628	+				-0.0
2,526,641	+				-1.3
2,526,685	-				+0.1
2,526,702	+				-0.1
2,526,702	+				+0.8
2,526,703	-				+0.2
2,526,799	+		HER17_RS11350	0.19	+0.4
2,526,800	-		HER17_RS11350	0.19	-0.2
2,526,834	+		HER17_RS11350	0.23	+0.5
2,526,835	-		HER17_RS11350	0.23	-0.8
2,526,878	-		HER17_RS11350	0.29	+0.6
2,526,878	-		HER17_RS11350	0.29	-0.9
2,526,890	+		HER17_RS11350	0.30	-0.3
2,526,891	-		HER17_RS11350	0.30	+0.0
2,526,911	+		HER17_RS11350	0.33	+0.3
2,527,128	-		HER17_RS11350	0.59	-0.1
2,527,128	-		HER17_RS11350	0.59	-1.2
2,527,128	-		HER17_RS11350	0.59	+0.1
2,527,130	-		HER17_RS11350	0.59	+0.2
2,527,178	+		HER17_RS11350	0.65	+0.1
2,527,178	+		HER17_RS11350	0.65	-0.5
2,527,178	+		HER17_RS11350	0.65	+0.1
2,527,182	-		HER17_RS11350	0.65	+0.5
2,527,233	+		HER17_RS11350	0.71	-1.0
2,527,233	+		HER17_RS11350	0.71	-0.9
2,527,234	-		HER17_RS11350	0.71	+1.0
2,527,234	-		HER17_RS11350	0.71	-0.1
2,527,274	+		HER17_RS11350	0.76	+0.4
2,527,289	-		HER17_RS11350	0.78	+0.3
2,527,347	+		HER17_RS11350	0.85	+0.3
2,527,348	-		HER17_RS11350	0.85	-0.2
2,527,348	-		HER17_RS11350	0.85	-0.1
2,527,374	-		HER17_RS11350	0.88	+0.5
2,527,374	-		HER17_RS11350	0.88	-0.1
2,527,398	+				+0.1
2,527,405	-				-0.0
2,527,450	+				-1.1
2,527,463	+				+0.4
2,527,464	-				+0.1
2,527,488	+				-0.7
2,527,499	+				+0.5
2,527,500	-				-0.3
2,527,520	+				+0.7
2,527,639	-		HER17_RS11355	0.29	-1.7
2,527,639	-		HER17_RS11355	0.29	+0.0
2,527,746	-		HER17_RS11355	0.80	+0.6
2,527,833	-				+0.6
2,527,833	-				+0.2
2,527,868	-		HER17_RS11360	0.33	+0.7
2,527,912	+		HER17_RS11360	0.71	-0.7
2,527,913	-		HER17_RS11360	0.72	+0.9
2,527,913	-		HER17_RS11360	0.72	-0.1
2,527,945	+				-0.0
2,527,946	-				-1.9
2,527,946	-				+0.7
2,527,947	+				+0.9
2,527,948	-				+0.2
2,527,984	-				+0.4
2,527,990	+				+0.4
2,527,990	+				+0.5
2,527,990	+				+0.4
2,527,991	-				-0.1
2,527,994	+				-0.9
2,527,994	+				-0.1
2,527,995	-				+0.0
2,527,995	-				+0.3
2,528,064	-				+0.3
2,528,090	+				-0.9
2,528,090	+				-0.1
2,528,091	-				+0.2
2,528,123	-				-1.5
2,528,123	-				-0.5
2,528,140	+				-0.3
2,528,141	-				+0.1
2,528,229	+				-0.1
2,528,240	-				-0.0
2,528,283	-				-0.1
2,528,285	-				+0.0
2,528,314	-				-0.1
2,528,314	-				-0.7
2,528,319	-				+0.4
2,528,319	-				+0.3
2,528,324	+				-0.5
2,528,345	-				+0.6
2,528,345	-				-0.2
2,528,345	-				-0.2
2,528,345	-				-0.1
2,528,345	-				+0.5
2,528,386	-				-0.2
2,528,393	-				+0.1
2,528,418	+				-1.2
2,528,419	-				-0.5
2,528,440	-				+1.3