Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS09980

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,206,096	+				+1.0
2,206,101	-		HER17_RS09970	0.10	-0.3
2,206,191	+		HER17_RS09970	0.22	+0.1
2,206,191	+		HER17_RS09970	0.22	-0.3
2,206,204	+		HER17_RS09970	0.23	-0.4
2,206,298	+		HER17_RS09970	0.35	-0.7
2,206,299	-		HER17_RS09970	0.35	-1.0
2,206,359	-		HER17_RS09970	0.42	+0.5
2,206,584	+		HER17_RS09970	0.70	+1.1
2,206,743	+				+0.6
2,206,776	+				-0.3
2,206,777	-				-0.0
2,206,831	+				-0.1
2,206,832	-				-0.1
2,206,832	-				+0.2
2,206,886	-		HER17_RS09975	0.22	-0.6
2,206,985	-		HER17_RS09975	0.60	-0.0
2,207,080	+				-0.2
2,207,081	-				+0.3
2,207,103	+				-0.2
2,207,103	+				+1.2
2,207,104	-				+1.5
2,207,104	-				-0.1
2,207,107	+				+0.2
2,207,107	+				+0.6
2,207,107	+				-0.1
2,207,107	+				+0.1
2,207,108	-				-1.3
2,207,109	+				-0.1
2,207,109	+				-1.3
2,207,109	+				-2.0
2,207,109	+				+1.0
2,207,109	+				+1.0
2,207,110	-				+0.0
2,207,110	-				-0.4
2,207,110	-				+0.6
2,207,110	-				-0.0
2,207,168	+		HER17_RS09980	0.11	+0.7
2,207,262	+		HER17_RS09980	0.25	-0.2
2,207,262	+		HER17_RS09980	0.25	+0.5
2,207,262	+		HER17_RS09980	0.25	-0.1
2,207,262	+		HER17_RS09980	0.25	+0.6
2,207,263	-		HER17_RS09980	0.26	-0.4
2,207,345	+		HER17_RS09980	0.38	+1.7
2,207,346	-		HER17_RS09980	0.38	-0.2
2,207,393	+		HER17_RS09980	0.45	-0.2
2,207,393	+		HER17_RS09980	0.45	+0.1
2,207,394	-		HER17_RS09980	0.46	-2.0
2,207,394	-		HER17_RS09980	0.46	+0.1
2,207,394	-		HER17_RS09980	0.46	-0.0
2,207,431	+		HER17_RS09980	0.51	-0.8
2,207,432	-		HER17_RS09980	0.51	-0.1
2,207,774	+				-0.4
2,207,775	-				+1.1
2,207,834	-				-0.2
2,207,894	+		HER17_RS09985	0.13	+0.5
2,207,894	+		HER17_RS09985	0.13	-0.7
2,207,894	+		HER17_RS09985	0.13	-0.3
2,207,895	-		HER17_RS09985	0.13	+0.3
2,208,001	+		HER17_RS09985	0.22	-0.4
2,208,002	-		HER17_RS09985	0.22	-0.3
2,208,002	-		HER17_RS09985	0.22	+0.6
2,208,057	-		HER17_RS09985	0.27	-0.1
2,208,149	+		HER17_RS09985	0.35	-0.4
2,208,149	+		HER17_RS09985	0.35	-0.4
2,208,149	+		HER17_RS09985	0.35	-0.2
2,208,229	-		HER17_RS09985	0.42	+0.6
2,208,252	+		HER17_RS09985	0.44	+0.8
2,208,252	+		HER17_RS09985	0.44	+0.5
2,208,253	-		HER17_RS09985	0.44	+0.1
2,208,328	-		HER17_RS09985	0.50	+1.8
2,208,328	-		HER17_RS09985	0.50	-0.1
2,208,430	+		HER17_RS09985	0.59	-0.1
2,208,578	+		HER17_RS09985	0.72	+0.4
2,208,578	+		HER17_RS09985	0.72	+0.2
2,208,579	-		HER17_RS09985	0.72	-0.4