Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS09895

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
2,186,411	+		HER17_RS09885	0.61	+0.4
2,186,425	+		HER17_RS09885	0.62	-0.9
2,186,425	+		HER17_RS09885	0.62	+0.9
2,186,780	+		HER17_RS09885	0.86	+0.5
2,186,780	+		HER17_RS09885	0.86	+0.4
2,186,780	+		HER17_RS09885	0.86	-0.7
2,186,781	-		HER17_RS09885	0.86	-0.7
2,186,845	+				+0.5
2,186,846	-				+0.2
2,186,939	+				+0.1
2,186,939	+				+0.2
2,186,954	+				+0.1
2,186,978	+				-0.4
2,186,979	-				+1.2
2,187,205	+				-1.1
2,187,213	+				-0.0
2,187,213	+				+0.0
2,187,289	+				-0.1
2,187,289	+				-0.4
2,187,290	-				+0.3
2,187,291	+				-0.3
2,187,291	+				-0.3
2,187,291	+				-0.8
2,187,291	+				+0.3
2,187,291	+				-0.1
2,187,292	-				+0.2
2,187,292	-				-0.5
2,187,292	-				-0.3
2,187,292	-				+0.6
2,187,292	-				+0.4
2,187,292	-				-0.7
2,187,292	-				-0.6
2,187,292	-				-1.2
2,187,292	-				+0.1
2,187,292	-				+0.8
2,187,328	+				+0.2
2,187,329	-				-0.4
2,187,350	+				-0.1
2,187,350	+				+0.7
2,187,351	-				-0.2
2,187,351	-				-0.0
2,187,351	-				-0.1
2,187,559	-		HER17_RS09895	0.20	-0.2
2,187,607	+		HER17_RS09895	0.25	+0.9
2,187,774	+		HER17_RS09895	0.40	-0.1
2,187,774	+		HER17_RS09895	0.40	-1.0
2,187,775	-		HER17_RS09895	0.40	-0.4
2,187,775	-		HER17_RS09895	0.40	+0.2
2,187,838	-		HER17_RS09895	0.46	-0.0
2,187,925	-		HER17_RS09895	0.54	+0.9
2,188,065	+		HER17_RS09895	0.67	+0.5
2,188,109	+		HER17_RS09895	0.71	+0.1
2,188,135	-		HER17_RS09895	0.74	+0.3
2,188,135	-		HER17_RS09895	0.74	-0.9
2,188,145	+		HER17_RS09895	0.75	-0.3
2,188,145	+		HER17_RS09895	0.75	+1.1
2,188,398	-				+0.6
2,188,398	-				+0.5
2,188,417	-				-0.9
2,188,437	+				-0.5
2,188,438	-				-0.5
2,188,438	-				+0.1
2,188,461	-				+1.5
2,188,461	-				+0.4
2,188,461	-				-0.4
2,188,512	+				+0.9
2,188,513	-				+0.0
2,188,554	+				+0.3
2,188,554	+				-0.4
2,188,554	+				+0.1
2,188,555	-				-1.0
2,188,557	-				+0.2
2,188,557	-				+0.4
2,188,598	+		HER17_RS09900	0.11	+0.3
2,188,673	+		HER17_RS09900	0.17	-0.1
2,188,673	+		HER17_RS09900	0.17	-0.0
2,188,673	+		HER17_RS09900	0.17	-0.1
2,188,674	-		HER17_RS09900	0.17	+0.9
2,188,674	-		HER17_RS09900	0.17	+0.3
2,188,747	+		HER17_RS09900	0.23	-2.0
2,188,787	-		HER17_RS09900	0.26	+0.4
2,188,883	+		HER17_RS09900	0.33	-0.2
2,188,900	+		HER17_RS09900	0.35	-0.6
2,188,974	+		HER17_RS09900	0.40	-0.1
2,188,974	+		HER17_RS09900	0.40	+1.3
2,188,975	-		HER17_RS09900	0.41	+0.2
2,188,975	-		HER17_RS09900	0.41	-0.7
2,188,975	-		HER17_RS09900	0.41	-0.1
2,188,975	-		HER17_RS09900	0.41	+0.2
2,188,978	-		HER17_RS09900	0.41	-0.2
2,189,055	+		HER17_RS09900	0.47	+0.1
2,189,055	+		HER17_RS09900	0.47	+0.5
2,189,055	+		HER17_RS09900	0.47	-1.4
2,189,056	-		HER17_RS09900	0.47	+0.1
2,189,334	+		HER17_RS09900	0.69	-0.3
2,189,334	+		HER17_RS09900	0.69	-0.5
2,189,335	-		HER17_RS09900	0.69	-0.1
2,189,335	-		HER17_RS09900	0.69	+0.1
2,189,382	+		HER17_RS09900	0.73	+1.0
2,189,383	-		HER17_RS09900	0.73	+0.7
2,189,412	+		HER17_RS09900	0.75	+0.3
2,189,412	+		HER17_RS09900	0.75	+0.4
2,189,413	-		HER17_RS09900	0.75	+0.1
2,189,416	+		HER17_RS09900	0.75	-0.0
2,189,416	+		HER17_RS09900	0.75	-0.3
2,189,417	-		HER17_RS09900	0.75	-0.3