Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS08600

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,888,233	+		HER17_RS08585	0.72	-0.4
1,888,233	+		HER17_RS08585	0.72	+0.3
1,888,234	-		HER17_RS08585	0.73	+0.6
1,888,283	-				-0.5
1,888,322	-				-0.4
1,888,325	+				+0.9
1,888,325	+				+0.4
1,888,328	+				+0.3
1,888,329	-				-0.8
1,888,329	-				+0.2
1,888,329	-				-0.5
1,888,388	-				+0.6
1,888,388	-				+1.6
1,888,388	-				-0.2
1,888,389	+				+0.3
1,888,400	-				-0.3
1,888,404	-				-0.4
1,888,518	+				-0.0
1,888,592	+		HER17_RS08590	0.21	-0.8
1,888,718	-		HER17_RS08590	0.70	-0.0
1,888,813	+				-0.7
1,888,813	+				+0.8
1,888,814	-				-0.2
1,888,837	-				+0.2
1,888,847	+				-0.2
1,888,847	+				-0.5
1,888,854	+				-0.6
1,888,855	-				-0.1
1,888,856	+				+0.4
1,888,857	-				-0.3
1,888,857	-				-0.3
1,888,880	-				-0.7
1,888,999	-		HER17_RS08595	0.48	-1.5
1,889,038	+		HER17_RS08595	0.65	-0.8
1,889,039	-		HER17_RS08595	0.65	+0.3
1,889,114	+				-0.4
1,889,161	-				-0.0
1,889,195	+				-0.5
1,889,208	+				-0.6
1,889,208	+				+0.3
1,889,363	-		HER17_RS08600	0.13	+0.4
1,889,438	-		HER17_RS08600	0.20	-0.3
1,889,438	-		HER17_RS08600	0.20	-0.9
1,889,445	+		HER17_RS08600	0.21	+0.9
1,889,445	+		HER17_RS08600	0.21	+0.1
1,889,445	+		HER17_RS08600	0.21	-0.0
1,889,445	+		HER17_RS08600	0.21	+0.2
1,889,446	-		HER17_RS08600	0.21	-0.3
1,889,446	-		HER17_RS08600	0.21	-0.3
1,889,446	-		HER17_RS08600	0.21	-0.2
1,889,569	-		HER17_RS08600	0.33	-0.2
1,889,596	-		HER17_RS08600	0.35	-0.1
1,889,611	+		HER17_RS08600	0.37	-0.9
1,889,613	+		HER17_RS08600	0.37	-0.2
1,889,613	+		HER17_RS08600	0.37	-0.0
1,889,613	+		HER17_RS08600	0.37	-1.3
1,889,613	+		HER17_RS08600	0.37	-0.5
1,889,613	+		HER17_RS08600	0.37	+0.6
1,889,613	+		HER17_RS08600	0.37	+0.5
1,889,613	+		HER17_RS08600	0.37	+0.3
1,889,613	+		HER17_RS08600	0.37	+0.3
1,889,614	-		HER17_RS08600	0.37	+0.6
1,889,614	-		HER17_RS08600	0.37	-0.6
1,889,614	-		HER17_RS08600	0.37	-0.6
1,889,614	-		HER17_RS08600	0.37	-0.6
1,889,642	+		HER17_RS08600	0.40	+0.1
1,889,642	+		HER17_RS08600	0.40	-0.5
1,889,643	-		HER17_RS08600	0.40	+0.1
1,889,654	+		HER17_RS08600	0.41	-0.2
1,889,713	+		HER17_RS08600	0.46	-0.2
1,889,714	-		HER17_RS08600	0.46	-0.1
1,889,790	+		HER17_RS08600	0.54	-0.0
1,890,035	-		HER17_RS08600	0.77	-0.2
1,890,035	-		HER17_RS08600	0.77	+0.2
1,890,086	+		HER17_RS08600	0.82	+0.3
1,890,098	-		HER17_RS08600	0.83	-0.8
1,890,140	+		HER17_RS08600	0.87	+1.3
1,890,146	+		HER17_RS08600	0.88	-0.5
1,890,147	-		HER17_RS08600	0.88	-0.5
1,890,176	+				-0.1
1,890,177	-				+0.1
1,890,179	-				+0.5
1,890,254	+				+0.2
1,890,254	+				+0.8
1,890,255	-				-0.9
1,890,332	+				-0.2
1,890,356	+				-0.3
1,890,357	-				-0.5
1,890,362	+				+0.2
1,890,362	+				+0.3
1,890,421	+				-0.1
1,890,428	-				+0.5
1,890,441	+				+0.7
1,890,454	+				+0.6
1,890,454	+				+0.4
1,890,454	+				-0.0
1,890,455	-				+0.2
1,890,455	-				+0.3
1,890,455	-				+1.5
1,890,455	-				+0.6
1,890,536	+		HER17_RS08605	0.27	+0.2
1,890,571	+		HER17_RS08605	0.40	+1.6
1,890,572	-		HER17_RS08605	0.40	-1.1
1,890,594	+		HER17_RS08605	0.48	+0.1
1,890,595	-		HER17_RS08605	0.48	-0.3
1,890,713	+		HER17_RS08605	0.89	+1.3
1,890,713	+		HER17_RS08605	0.89	-0.2
1,890,713	+		HER17_RS08605	0.89	-0.0
1,890,714	-		HER17_RS08605	0.89	+0.3
1,890,793	-				-0.3
1,890,794	+				-0.0
1,890,795	-				+0.4
1,890,823	+				-0.4
1,890,823	+				-0.2
1,890,942	+				-0.2
1,890,943	-				+0.2
1,890,967	+				-0.4
1,890,968	-				-0.6
1,890,990	+				+0.3
1,890,991	-				-1.6
1,890,991	-				+1.2
1,891,203	-		HER17_RS08610	0.12	+0.3