Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS08365

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,843,230	+		HER17_RS08360	0.34	+0.1
1,843,230	+		HER17_RS08360	0.34	+0.3
1,843,231	-		HER17_RS08360	0.35	-0.2
1,843,284	+		HER17_RS08360	0.45	+0.3
1,843,285	-		HER17_RS08360	0.45	-0.2
1,843,295	-		HER17_RS08360	0.47	-1.7
1,843,295	-		HER17_RS08360	0.47	-0.6
1,843,304	-		HER17_RS08360	0.49	+0.1
1,843,304	-		HER17_RS08360	0.49	-0.5
1,843,307	+		HER17_RS08360	0.49	+0.8
1,843,307	+		HER17_RS08360	0.49	-0.6
1,843,318	+		HER17_RS08360	0.52	-1.2
1,843,318	+		HER17_RS08360	0.52	-0.6
1,843,334	+		HER17_RS08360	0.55	-0.4
1,843,364	-		HER17_RS08360	0.60	+0.4
1,843,364	-		HER17_RS08360	0.60	-0.2
1,843,380	-		HER17_RS08360	0.64	+0.4
1,843,380	-		HER17_RS08360	0.64	+0.1
1,843,402	-		HER17_RS08360	0.68	+0.3
1,843,427	+		HER17_RS08360	0.73	+0.6
1,843,476	+		HER17_RS08360	0.82	-0.8
1,843,477	-		HER17_RS08360	0.82	-0.5
1,843,477	-		HER17_RS08360	0.82	+0.4
1,843,477	-		HER17_RS08360	0.82	+0.3
1,843,484	+		HER17_RS08360	0.84	+0.3
1,843,484	+		HER17_RS08360	0.84	-0.6
1,843,484	+		HER17_RS08360	0.84	-0.4
1,843,507	+		HER17_RS08360	0.88	-0.4
1,843,508	-		HER17_RS08360	0.88	-0.7
1,843,512	-		HER17_RS08360	0.89	+0.7
1,843,532	+				-0.1
1,843,533	-				+0.9
1,843,541	+				-0.1
1,843,614	+				-0.4
1,843,622	-				-0.4
1,843,622	-				+1.1
1,843,623	+				+1.2
1,843,623	+				+0.3
1,843,624	-				-0.1
1,843,627	+				+0.5
1,843,628	-				+0.0
1,843,634	+				-0.3
1,843,686	+				+0.5
1,843,687	-				+0.0
1,843,687	-				+0.2
1,843,690	-				+0.1
1,843,733	-				-0.7
1,843,738	+				+0.1
1,843,739	-				-0.7
1,843,768	+				-0.6
1,843,768	+				-0.5
1,843,800	-				-1.7
1,843,820	-				-0.0
1,843,820	-				+0.5
1,843,990	+				+0.7
1,843,991	-				-0.6
1,843,991	-				-0.5
1,843,991	-				-0.1
1,844,015	+				+1.0
1,844,016	-				+0.5
1,844,043	-				-0.5
1,844,071	+				-0.1
1,844,087	+				+0.1
1,844,087	+				+0.1
1,844,168	-				+0.6
1,844,257	+		HER17_RS08365	0.20	+0.8
1,844,257	+		HER17_RS08365	0.20	-1.4
1,844,297	+		HER17_RS08365	0.25	-0.6
1,844,297	+		HER17_RS08365	0.25	+1.1
1,844,298	-		HER17_RS08365	0.25	+0.7
1,844,298	-		HER17_RS08365	0.25	+0.1
1,844,298	-		HER17_RS08365	0.25	+0.0
1,844,364	-		HER17_RS08365	0.34	-0.0
1,844,416	+		HER17_RS08365	0.40	-0.6
1,844,416	+		HER17_RS08365	0.40	-0.2
1,844,436	+		HER17_RS08365	0.43	+0.5
1,844,437	-		HER17_RS08365	0.43	-0.0
1,844,440	-		HER17_RS08365	0.43	+0.1
1,844,466	+		HER17_RS08365	0.47	+0.2
1,844,477	-		HER17_RS08365	0.48	-0.3
1,844,498	+		HER17_RS08365	0.51	-0.9
1,844,520	+		HER17_RS08365	0.53	+0.0
1,844,520	+		HER17_RS08365	0.53	+0.4
1,844,555	+		HER17_RS08365	0.58	+0.3
1,844,603	+		HER17_RS08365	0.64	+0.4
1,844,605	+		HER17_RS08365	0.64	+0.4
1,844,866	+				-0.1
1,844,867	-				-0.0
1,844,880	-				-0.1
1,844,965	+				+0.2
1,844,966	-				-0.2
1,844,966	-				+0.6
1,844,969	-				+0.1
1,844,979	+				+0.1
1,844,979	+				-0.7
1,844,979	+				+0.0
1,844,979	+				-0.2
1,844,979	+				+0.1
1,844,979	+				-0.1
1,844,979	+				-0.1
1,844,980	-				-0.5
1,844,980	-				+0.2
1,844,980	-				-0.9
1,844,980	-				+0.3
1,844,980	-				+0.9
1,844,980	-				-0.7
1,845,103	-				-0.2
1,845,104	+				-0.2
1,845,121	-				-0.7
1,845,147	-				-0.8
1,845,147	-				+0.7
1,845,270	+				+0.1
1,845,273	+				+0.1
1,845,273	+				-0.0
1,845,273	+				+0.3
1,845,274	-				+0.8
1,845,275	+				+0.2
1,845,276	-				-0.3
1,845,276	-				+0.5
1,845,288	-				+0.8
1,845,324	+				+0.1
1,845,351	+				-0.3
1,845,360	+				-1.2
1,845,396	+				-0.3
1,845,396	+				-0.7
1,845,397	-				-0.5
1,845,461	-				+0.9
1,845,481	+				+0.5
1,845,482	-				+0.0
1,845,482	-				+0.4
1,845,482	-				-0.1
1,845,520	+				+0.8
1,845,521	-				-0.7
1,845,521	-				-0.0
1,845,533	+		HER17_RS08375	0.12	-0.2
1,845,601	+		HER17_RS08375	0.22	+0.1
1,845,602	-		HER17_RS08375	0.22	+0.9
1,845,602	-		HER17_RS08375	0.22	-0.6
1,845,602	-		HER17_RS08375	0.22	-0.6
1,845,602	-		HER17_RS08375	0.22	-0.1
1,845,615	+		HER17_RS08375	0.24	+1.0
1,845,638	+		HER17_RS08375	0.28	-0.3
1,845,638	+		HER17_RS08375	0.28	+0.3
1,845,638	+		HER17_RS08375	0.28	+0.1
1,845,639	-		HER17_RS08375	0.28	-0.3
1,845,639	-		HER17_RS08375	0.28	+0.3
1,845,754	+		HER17_RS08375	0.46	-0.1
1,845,765	+		HER17_RS08375	0.48	+0.8
1,845,766	-		HER17_RS08375	0.48	-0.5
1,845,799	+		HER17_RS08375	0.53	-0.6
1,845,799	+		HER17_RS08375	0.53	-0.5
1,845,799	+		HER17_RS08375	0.53	-0.3
1,845,800	-		HER17_RS08375	0.53	+0.5
1,845,800	-		HER17_RS08375	0.53	+0.8
1,845,800	-		HER17_RS08375	0.53	+1.4
1,845,800	-		HER17_RS08375	0.53	+0.3
1,845,834	+		HER17_RS08375	0.59	+0.1
1,845,851	+		HER17_RS08375	0.61	+0.1
1,845,851	+		HER17_RS08375	0.61	-0.4