Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS06790

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,507,745	+		HER17_RS06785	0.15	+0.5
1,507,746	-		HER17_RS06785	0.15	+0.4
1,507,772	-		HER17_RS06785	0.20	-0.6
1,507,804	+		HER17_RS06785	0.26	+0.3
1,507,804	+		HER17_RS06785	0.26	+0.2
1,507,831	-		HER17_RS06785	0.31	+0.4
1,507,831	-		HER17_RS06785	0.31	-0.5
1,507,881	+		HER17_RS06785	0.40	-2.0
1,507,881	+		HER17_RS06785	0.40	+0.6
1,507,882	-		HER17_RS06785	0.41	-0.2
1,507,907	+		HER17_RS06785	0.45	-0.7
1,507,907	+		HER17_RS06785	0.45	-0.7
1,507,910	-		HER17_RS06785	0.46	-0.1
1,507,910	-		HER17_RS06785	0.46	-0.5
1,507,937	+		HER17_RS06785	0.51	-0.4
1,508,094	+		HER17_RS06785	0.80	-0.0
1,508,145	+		HER17_RS06785	0.89	+0.2
1,508,146	-		HER17_RS06785	0.89	+0.4
1,508,205	+				-0.6
1,508,205	+				+0.3
1,508,206	-				-0.2
1,508,207	+				-0.8
1,508,207	+				+0.0
1,508,207	+				+0.2
1,508,207	+				+0.4
1,508,207	+				-0.6
1,508,208	-				+0.4
1,508,218	+				-0.2
1,508,218	+				-0.8
1,508,218	+				+0.4
1,508,218	+				+0.2
1,508,219	-				-0.9
1,508,219	-				+0.2
1,508,221	-				+0.4
1,508,221	-				-0.3
1,508,221	-				+0.7
1,508,224	+				+0.4
1,508,224	+				-3.0
1,508,225	-				+1.0
1,508,225	-				-0.0
1,508,228	+				-0.4
1,508,229	-				+0.2
1,508,258	+				+0.5
1,508,259	-				+0.3
1,508,271	+				+0.2
1,508,330	+				-0.1
1,508,331	-				+0.0
1,508,335	-				-0.5
1,508,370	-				+0.5
1,508,390	+				-0.6
1,508,390	+				+0.1
1,508,431	+				+1.0
1,508,431	+				+0.0
1,508,431	+				+1.4
1,508,439	+				-0.3
1,508,439	+				-0.4
1,508,440	-				-0.2
1,508,443	+				-0.1
1,508,444	-				-0.2
1,508,444	-				-0.4
1,508,455	+				+0.1
1,508,459	+				+0.1
1,508,527	+				-0.6
1,508,580	-				-0.2
1,508,659	+				-0.1
1,508,668	+				+0.3
1,508,718	+				+1.2
1,508,718	+				-0.2
1,508,718	+				-0.2
1,508,729	-				+0.2
1,508,737	+				-0.1
1,508,738	-				-0.8
1,508,740	+				-0.1
1,508,740	+				-1.2
1,508,741	-				+0.8
1,508,752	+				+0.5
1,508,753	-				-0.0
1,508,756	+		HER17_RS06790	0.10	+0.2
1,508,756	+		HER17_RS06790	0.10	+0.4
1,508,757	-		HER17_RS06790	0.10	+0.9
1,508,763	-		HER17_RS06790	0.13	-0.5
1,508,880	-		HER17_RS06790	0.57	-1.1
1,508,913	+		HER17_RS06790	0.69	+0.4
1,508,913	+		HER17_RS06790	0.69	+0.7
1,508,914	-		HER17_RS06790	0.69	-0.3
1,508,914	-		HER17_RS06790	0.69	+0.3
1,508,914	-		HER17_RS06790	0.69	+0.3
1,509,044	+				+0.4
1,509,079	+				+0.7
1,509,080	-				-0.2
1,509,080	-				+0.1
1,509,093	+				+0.7
1,509,093	+				+0.5
1,509,093	+				-0.2
1,509,093	+				+0.2
1,509,117	+				-2.5
1,509,118	-				+1.2
1,509,118	-				+0.3
1,509,118	-				+0.0
1,509,140	+				+0.1
1,509,143	+				+0.1
1,509,144	-				-0.3
1,509,191	-				+0.3
1,509,205	+		HER17_RS06795	0.11	+0.2
1,509,254	-		HER17_RS06795	0.18	+0.9
1,509,254	-		HER17_RS06795	0.18	+1.1
1,509,258	+		HER17_RS06795	0.18	-1.4
1,509,300	+		HER17_RS06795	0.24	-1.4
1,509,301	-		HER17_RS06795	0.24	-0.4
1,509,304	+		HER17_RS06795	0.24	-0.6
1,509,304	+		HER17_RS06795	0.24	+0.2
1,509,304	+		HER17_RS06795	0.24	+0.4
1,509,305	-		HER17_RS06795	0.25	+0.6
1,509,305	-		HER17_RS06795	0.25	-1.0
1,509,305	-		HER17_RS06795	0.25	-0.2
1,509,369	+		HER17_RS06795	0.33	+0.4
1,509,382	+		HER17_RS06795	0.35	+0.5
1,509,383	-		HER17_RS06795	0.35	+0.1
1,509,383	-		HER17_RS06795	0.35	-1.3
1,509,387	+		HER17_RS06795	0.35	-1.6
1,509,387	+		HER17_RS06795	0.35	-0.5
1,509,387	+		HER17_RS06795	0.35	-0.4
1,509,387	+		HER17_RS06795	0.35	+0.2
1,509,388	-		HER17_RS06795	0.35	+0.2
1,509,388	-		HER17_RS06795	0.35	-0.4
1,509,391	+		HER17_RS06795	0.36	-0.3
1,509,391	+		HER17_RS06795	0.36	-0.7
1,509,391	+		HER17_RS06795	0.36	+0.0
1,509,392	-		HER17_RS06795	0.36	-0.5
1,509,392	-		HER17_RS06795	0.36	+0.5
1,509,392	-		HER17_RS06795	0.36	+1.3
1,509,393	+		HER17_RS06795	0.36	+0.1
1,509,408	+		HER17_RS06795	0.38	-0.3
1,509,409	-		HER17_RS06795	0.38	-0.3
1,509,409	-		HER17_RS06795	0.38	+0.4
1,509,423	+		HER17_RS06795	0.40	-0.3
1,509,499	+		HER17_RS06795	0.50	+0.2
1,509,500	-		HER17_RS06795	0.50	-0.1
1,509,508	-		HER17_RS06795	0.51	+0.4
1,509,508	-		HER17_RS06795	0.51	+0.2
1,509,573	+		HER17_RS06795	0.60	-0.2
1,509,573	+		HER17_RS06795	0.60	-0.4
1,509,574	-		HER17_RS06795	0.60	-0.0
1,509,574	-		HER17_RS06795	0.60	-0.5
1,509,751	-		HER17_RS06795	0.83	-0.1
1,509,756	+		HER17_RS06795	0.84	-0.5
1,509,800	-		HER17_RS06795	0.90	+0.0
1,509,800	-		HER17_RS06795	0.90	-0.5
1,509,832	+				-0.2
1,509,878	-				-0.7
1,509,922	+				+0.4
1,509,927	-				-0.3
1,509,957	-				-0.4