Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS06325

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,403,907	+		HER17_RS06320	0.70	-0.6
1,403,907	+		HER17_RS06320	0.70	+1.3
1,403,907	+		HER17_RS06320	0.70	-0.7
1,403,907	+		HER17_RS06320	0.70	-0.0
1,403,907	+		HER17_RS06320	0.70	-1.5
1,403,907	+		HER17_RS06320	0.70	-0.4
1,403,907	+		HER17_RS06320	0.70	+0.1
1,403,907	+		HER17_RS06320	0.70	+0.3
1,403,908	-		HER17_RS06320	0.70	+0.5
1,403,908	-		HER17_RS06320	0.70	+1.3
1,403,908	-		HER17_RS06320	0.70	-0.3
1,403,908	-		HER17_RS06320	0.70	-0.5
1,403,908	-		HER17_RS06320	0.70	+0.3
1,403,910	+		HER17_RS06320	0.70	-0.3
1,403,910	+		HER17_RS06320	0.70	-1.1
1,403,910	+		HER17_RS06320	0.70	-1.1
1,404,187	-		HER17_RS06320	0.79	-1.7
1,404,287	-		HER17_RS06320	0.82	+0.4
1,404,289	+		HER17_RS06320	0.82	-0.2
1,404,393	+		HER17_RS06320	0.86	-0.1
1,404,426	-		HER17_RS06320	0.87	-0.3
1,404,514	+		HER17_RS06320	0.90	+0.0
1,404,667	-				-0.2
1,404,736	-				+0.3
1,404,789	+				-0.3
1,404,790	-				-1.9
1,404,790	-				-0.7
1,404,979	-		HER17_RS06325	0.11	+0.1
1,404,979	-		HER17_RS06325	0.11	-0.3
1,405,017	-		HER17_RS06325	0.15	-1.0
1,405,075	-		HER17_RS06325	0.19	+1.9
1,405,262	+		HER17_RS06325	0.34	-0.6
1,405,281	+		HER17_RS06325	0.36	+0.6
1,405,281	+		HER17_RS06325	0.36	+0.6
1,405,281	+		HER17_RS06325	0.36	-0.2
1,405,281	+		HER17_RS06325	0.36	+1.0
1,405,282	-		HER17_RS06325	0.36	-0.3
1,405,282	-		HER17_RS06325	0.36	-0.1
1,405,362	-		HER17_RS06325	0.42	-0.1
1,405,366	+		HER17_RS06325	0.43	-0.0
1,405,414	+		HER17_RS06325	0.47	-0.9
1,405,415	-		HER17_RS06325	0.47	-0.8
1,405,437	+		HER17_RS06325	0.49	-0.6
1,405,457	+		HER17_RS06325	0.50	+0.7
1,405,525	-		HER17_RS06325	0.56	+0.5
1,405,525	-		HER17_RS06325	0.56	+1.0
1,405,734	-		HER17_RS06325	0.73	+0.1
1,405,837	+		HER17_RS06325	0.81	+0.3
1,405,838	-		HER17_RS06325	0.81	-0.0
1,405,838	-		HER17_RS06325	0.81	+0.3
1,405,841	-		HER17_RS06325	0.81	-0.1
1,405,896	-		HER17_RS06325	0.86	+0.8
1,405,923	-		HER17_RS06325	0.88	+0.1
1,405,943	+		HER17_RS06325	0.89	+0.5
1,406,041	-				-0.5
1,406,072	+				+0.5
1,406,083	+				-0.0
1,406,124	-				+0.1
1,406,124	-				-0.4
1,406,183	-				+0.4
1,406,187	+				-0.2
1,406,195	+				+1.3
1,406,196	-				-1.3
1,406,196	-				+0.1
1,406,228	+				-0.3
1,406,229	-				-1.4
1,406,237	+				+0.8
1,406,237	+				+0.2
1,406,237	+				-2.0
1,406,237	+				-0.2
1,406,237	+				+0.1
1,406,238	-				-0.9
1,406,238	-				+0.2
1,406,251	+				-0.3
1,406,301	+				+1.3
1,406,303	+				-0.1
1,406,304	-				+1.1
1,406,304	-				-1.5
1,406,304	-				-0.4
1,406,319	+				+0.1
1,406,366	-				+0.0
1,406,446	+		HER17_RS06330	0.11	+0.2
1,406,446	+		HER17_RS06330	0.11	-0.7
1,406,447	-		HER17_RS06330	0.11	+0.2
1,406,447	-		HER17_RS06330	0.11	+0.1
1,406,528	+		HER17_RS06330	0.18	+0.2
1,406,590	+		HER17_RS06330	0.23	-1.7
1,406,590	+		HER17_RS06330	0.23	-0.5
1,406,590	+		HER17_RS06330	0.23	-0.1
1,406,591	-		HER17_RS06330	0.23	-0.3
1,406,643	+		HER17_RS06330	0.27	-1.5
1,406,644	-		HER17_RS06330	0.27	-0.0
1,406,860	-		HER17_RS06330	0.45	-0.0
1,406,890	+		HER17_RS06330	0.48	-0.7
1,406,891	-		HER17_RS06330	0.48	-0.1
1,406,891	-		HER17_RS06330	0.48	-0.5
1,406,942	-		HER17_RS06330	0.52	-0.4
1,406,949	+		HER17_RS06330	0.53	-0.0
1,406,949	+		HER17_RS06330	0.53	-0.4
1,406,949	+		HER17_RS06330	0.53	-0.3
1,406,949	+		HER17_RS06330	0.53	-1.3
1,406,950	-		HER17_RS06330	0.53	-0.2
1,406,950	-		HER17_RS06330	0.53	-0.5
1,406,950	-		HER17_RS06330	0.53	+0.2
1,406,950	-		HER17_RS06330	0.53	+0.3
1,406,962	+		HER17_RS06330	0.54	-0.9
1,407,003	+		HER17_RS06330	0.57	-0.7
1,407,003	+		HER17_RS06330	0.57	+0.4
1,407,003	+		HER17_RS06330	0.57	-0.7
1,407,003	+		HER17_RS06330	0.57	-0.7
1,407,003	+		HER17_RS06330	0.57	+0.2
1,407,003	+		HER17_RS06330	0.57	+0.3
1,407,003	+		HER17_RS06330	0.57	+0.1
1,407,003	+		HER17_RS06330	0.57	-1.6
1,407,003	+		HER17_RS06330	0.57	-0.9
1,407,003	+		HER17_RS06330	0.57	+0.7
1,407,004	-		HER17_RS06330	0.57	-0.5
1,407,004	-		HER17_RS06330	0.57	-0.9
1,407,004	-		HER17_RS06330	0.57	+0.5
1,407,004	-		HER17_RS06330	0.57	-0.1
1,407,004	-		HER17_RS06330	0.57	+0.1
1,407,042	+		HER17_RS06330	0.60	-0.4