Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS06300

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,393,825	+		HER17_RS06290	0.82	+0.4
1,393,826	-		HER17_RS06290	0.83	+0.5
1,393,826	-		HER17_RS06290	0.83	+0.5
1,393,977	-				+1.0
1,393,977	-				+1.3
1,394,000	-				-0.0
1,394,152	-		HER17_RS06295	0.27	-1.1
1,394,154	-		HER17_RS06295	0.27	+0.3
1,394,240	+		HER17_RS06295	0.41	-0.2
1,394,240	+		HER17_RS06295	0.41	+0.8
1,394,241	-		HER17_RS06295	0.41	+0.2
1,394,283	-		HER17_RS06295	0.47	+0.6
1,394,283	-		HER17_RS06295	0.47	-0.3
1,394,349	+		HER17_RS06295	0.57	-0.4
1,394,350	-		HER17_RS06295	0.57	-0.8
1,394,409	+		HER17_RS06295	0.66	-0.3
1,394,437	-		HER17_RS06295	0.71	-0.1
1,394,459	+		HER17_RS06295	0.74	+0.1
1,394,460	-		HER17_RS06295	0.74	-0.5
1,394,460	-		HER17_RS06295	0.74	+0.7
1,394,460	-		HER17_RS06295	0.74	+1.0
1,394,504	+		HER17_RS06295	0.81	-0.4
1,394,505	-		HER17_RS06295	0.81	+0.4
1,394,505	-		HER17_RS06295	0.81	+0.1
1,394,507	+		HER17_RS06295	0.81	+0.3
1,394,507	+		HER17_RS06295	0.81	+0.2
1,394,507	+		HER17_RS06295	0.81	+0.1
1,394,508	-		HER17_RS06295	0.81	+0.5
1,394,508	-		HER17_RS06295	0.81	+0.6
1,394,508	-		HER17_RS06295	0.81	-0.2
1,394,508	-		HER17_RS06295	0.81	+0.9
1,394,513	+		HER17_RS06295	0.82	+0.2
1,394,513	+		HER17_RS06295	0.82	+0.1
1,394,514	-		HER17_RS06295	0.82	+0.3
1,394,514	-		HER17_RS06295	0.82	-0.1
1,394,514	-		HER17_RS06295	0.82	+0.8
1,394,636	+				-0.7
1,394,653	+				+0.3
1,394,653	+				+0.2
1,394,653	+				-0.5
1,394,653	+				+0.8
1,394,654	-				+0.2
1,394,654	-				+0.3
1,394,654	-				+0.6
1,394,662	-				-0.2
1,394,662	-				-0.5
1,394,709	+				+0.6
1,394,710	-				+0.5
1,394,811	+		HER17_RS06300	0.22	+1.8
1,394,812	-		HER17_RS06300	0.22	+0.3
1,394,912	+		HER17_RS06300	0.36	-0.3
1,394,935	-		HER17_RS06300	0.39	-0.0
1,395,051	+		HER17_RS06300	0.55	-0.8
1,395,057	+		HER17_RS06300	0.56	+0.2
1,395,057	+		HER17_RS06300	0.56	+0.2
1,395,057	+		HER17_RS06300	0.56	+0.9
1,395,057	+		HER17_RS06300	0.56	+0.1
1,395,057	+		HER17_RS06300	0.56	-0.2
1,395,057	+		HER17_RS06300	0.56	-0.0
1,395,058	-		HER17_RS06300	0.56	-0.5
1,395,058	-		HER17_RS06300	0.56	-1.3
1,395,058	-		HER17_RS06300	0.56	-0.5
1,395,058	-		HER17_RS06300	0.56	+0.9
1,395,058	-		HER17_RS06300	0.56	-0.8
1,395,058	-		HER17_RS06300	0.56	-0.1
1,395,058	-		HER17_RS06300	0.56	+1.0
1,395,058	-		HER17_RS06300	0.56	+0.4
1,395,060	-		HER17_RS06300	0.56	+0.7
1,395,127	-		HER17_RS06300	0.65	+0.3
1,395,127	-		HER17_RS06300	0.65	-0.3
1,395,193	+		HER17_RS06300	0.74	+0.2
1,395,194	-		HER17_RS06300	0.75	+0.1
1,395,194	-		HER17_RS06300	0.75	-0.2
1,395,194	-		HER17_RS06300	0.75	+0.5
1,395,267	-		HER17_RS06300	0.85	-0.4
1,395,275	+		HER17_RS06300	0.86	-0.1
1,395,275	+		HER17_RS06300	0.86	-0.3
1,395,275	+		HER17_RS06300	0.86	+0.3
1,395,275	+		HER17_RS06300	0.86	+0.8
1,395,276	-		HER17_RS06300	0.86	+1.6
1,395,293	+		HER17_RS06300	0.88	-0.1
1,395,294	-		HER17_RS06300	0.88	+1.5
1,395,378	+				-0.0
1,395,378	+				+0.3
1,395,378	+				-0.3
1,395,378	+				-0.3
1,395,379	-				-0.0
1,395,379	-				-0.3
1,395,379	-				+0.2
1,395,392	+				+0.2
1,395,392	+				-0.7
1,395,392	+				-0.4
1,395,393	-				+0.6
1,395,405	+				-0.3
1,395,406	-				+0.3
1,395,437	-				-0.1
1,395,437	-				+0.5
1,395,471	+				+0.2
1,395,471	+				+0.3
1,395,472	-				+1.2
1,395,472	-				-0.1
1,395,472	-				-0.3
1,395,472	-				+0.3
1,395,502	+				+0.7
1,395,502	+				-0.4
1,395,503	-				-0.4
1,395,568	-		HER17_RS06305	0.12	-0.6
1,395,646	+		HER17_RS06305	0.18	-0.4
1,395,646	+		HER17_RS06305	0.18	-1.3
1,395,647	-		HER17_RS06305	0.18	-0.1
1,395,647	-		HER17_RS06305	0.18	+0.5
1,395,718	+		HER17_RS06305	0.23	+0.3
1,395,722	-		HER17_RS06305	0.23	-0.5
1,395,722	-		HER17_RS06305	0.23	-0.3
1,395,722	-		HER17_RS06305	0.23	-0.3
1,395,722	-		HER17_RS06305	0.23	+0.7
1,395,725	+		HER17_RS06305	0.23	-0.1
1,395,726	-		HER17_RS06305	0.24	-0.3
1,395,726	-		HER17_RS06305	0.24	+0.2
1,395,790	+		HER17_RS06305	0.28	+0.5
1,395,790	+		HER17_RS06305	0.28	+0.4
1,395,835	+		HER17_RS06305	0.32	+0.1
1,395,835	+		HER17_RS06305	0.32	+0.2
1,395,836	-		HER17_RS06305	0.32	+0.1
1,395,901	+		HER17_RS06305	0.36	-0.1
1,395,901	+		HER17_RS06305	0.36	+0.2
1,395,901	+		HER17_RS06305	0.36	+0.7
1,395,923	+		HER17_RS06305	0.38	+0.7
1,395,924	-		HER17_RS06305	0.38	+0.2
1,395,924	-		HER17_RS06305	0.38	-0.2
1,396,273	+		HER17_RS06305	0.64	+0.7
1,396,274	-		HER17_RS06305	0.64	+0.4