Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS05500

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,212,833	+		HER17_RS05490	0.45	-0.5
1,212,834	-		HER17_RS05490	0.45	-0.1
1,212,930	-		HER17_RS05490	0.69	+0.1
1,213,040	+				-0.2
1,213,056	+				-0.3
1,213,057	-				+0.7
1,213,095	+		HER17_RS05495	0.12	-0.3
1,213,177	+		HER17_RS05495	0.46	+0.5
1,213,177	+		HER17_RS05495	0.46	-0.0
1,213,178	-		HER17_RS05495	0.47	-0.1
1,213,178	-		HER17_RS05495	0.47	-0.3
1,213,178	-		HER17_RS05495	0.47	+0.1
1,213,178	-		HER17_RS05495	0.47	-0.1
1,213,187	-		HER17_RS05495	0.50	-0.2
1,213,208	-		HER17_RS05495	0.59	+0.7
1,213,208	-		HER17_RS05495	0.59	+0.5
1,213,223	+		HER17_RS05495	0.65	-0.2
1,213,223	+		HER17_RS05495	0.65	+0.8
1,213,224	-		HER17_RS05495	0.66	-0.7
1,213,227	+		HER17_RS05495	0.67	+0.4
1,213,227	+		HER17_RS05495	0.67	-0.5
1,213,227	+		HER17_RS05495	0.67	+0.7
1,213,228	-		HER17_RS05495	0.68	-0.2
1,213,228	-		HER17_RS05495	0.68	-1.0
1,213,228	-		HER17_RS05495	0.68	+0.2
1,213,228	-		HER17_RS05495	0.68	-0.1
1,213,296	+				+0.5
1,213,297	-				-3.2
1,213,297	-				+0.5
1,213,300	-				-0.1
1,213,337	+				-0.1
1,213,337	+				+0.3
1,213,338	-				-0.3
1,213,338	-				-0.6
1,213,338	-				-0.3
1,213,338	-				-0.4
1,213,351	+				-1.2
1,213,362	+				+0.9
1,213,362	+				+0.4
1,213,362	+				+0.0
1,213,362	+				-0.3
1,213,363	-				+0.4
1,213,363	-				-0.1
1,213,363	-				+1.1
1,213,363	-				+0.4
1,213,363	-				+0.5
1,213,364	+				+0.1
1,213,365	-				-0.1
1,213,366	-				+0.1
1,213,460	+				-0.7
1,213,482	-				-0.5
1,213,548	-				+1.4
1,213,551	+				+0.9
1,213,581	+				+0.3
1,213,581	+				-0.6
1,213,581	+				+0.4
1,213,582	-				-0.2
1,213,589	+				+0.0
1,213,630	+				+0.3
1,213,631	-				-0.2
1,213,631	-				-1.5
1,213,669	+				-0.6
1,213,669	+				-0.5
1,213,677	-				+0.0
1,213,677	-				-0.5
1,213,691	+				+0.2
1,213,692	-				-0.5
1,213,737	+				-0.3
1,213,741	+				-0.4
1,213,746	-				-1.1
1,213,782	+				-0.4
1,213,782	+				-0.1
1,213,782	+				-0.8
1,213,783	-				+0.9
1,213,788	+				-0.0
1,213,789	-				+1.0
1,213,789	-				-0.1
1,213,789	-				-1.1
1,213,851	-				+0.1
1,213,871	+				-0.4
1,213,871	+				-0.3
1,213,937	+		HER17_RS05500	0.14	-0.5
1,213,937	+		HER17_RS05500	0.14	-1.7
1,213,938	-		HER17_RS05500	0.15	+0.0
1,214,031	+		HER17_RS05500	0.26	+0.1
1,214,086	+		HER17_RS05500	0.33	+0.6
1,214,086	+		HER17_RS05500	0.33	-1.0
1,214,165	+		HER17_RS05500	0.43	+0.6
1,214,265	+		HER17_RS05500	0.56	+0.6
1,214,265	+		HER17_RS05500	0.56	+0.4
1,214,265	+		HER17_RS05500	0.56	+0.3
1,214,266	-		HER17_RS05500	0.56	-2.4
1,214,278	-		HER17_RS05500	0.57	-0.1
1,214,286	+		HER17_RS05500	0.58	-0.0
1,214,286	+		HER17_RS05500	0.58	-0.1
1,214,405	+		HER17_RS05500	0.73	-0.7
1,214,487	+		HER17_RS05500	0.84	-0.1
1,214,487	+		HER17_RS05500	0.84	+0.4
1,214,487	+		HER17_RS05500	0.84	+0.0
1,214,487	+		HER17_RS05500	0.84	-1.4
1,214,487	+		HER17_RS05500	0.84	+0.2
1,214,487	+		HER17_RS05500	0.84	+0.2
1,214,487	+		HER17_RS05500	0.84	+0.7
1,214,487	+		HER17_RS05500	0.84	-1.4
1,214,488	-		HER17_RS05500	0.84	-0.1
1,214,488	-		HER17_RS05500	0.84	-0.1
1,214,489	+		HER17_RS05500	0.84	-0.2
1,214,490	-		HER17_RS05500	0.84	+1.3
1,214,490	-		HER17_RS05500	0.84	+0.0
1,214,490	-		HER17_RS05500	0.84	+0.5
1,214,490	-		HER17_RS05500	0.84	-0.2
1,214,490	-		HER17_RS05500	0.84	+0.5
1,214,503	-		HER17_RS05500	0.86	+0.1
1,214,504	+		HER17_RS05500	0.86	+0.1
1,214,505	-		HER17_RS05500	0.86	+1.0
1,214,511	+		HER17_RS05500	0.87	-0.7
1,214,512	-		HER17_RS05500	0.87	+0.1
1,214,512	-		HER17_RS05500	0.87	-0.1
1,214,513	+		HER17_RS05500	0.87	+0.8
1,214,514	-		HER17_RS05500	0.87	+0.2
1,214,514	-		HER17_RS05500	0.87	+0.1
1,214,514	-		HER17_RS05500	0.87	+0.1
1,214,514	-		HER17_RS05500	0.87	+0.2
1,214,543	+				-0.2
1,214,543	+				-1.1
1,214,555	+				-0.7
1,214,555	+				+0.2
1,214,555	+				+1.0
1,214,556	-				+0.0
1,214,556	-				-0.8
1,214,556	-				-0.7
1,214,559	+				-0.2
1,214,560	-				-0.9
1,214,560	-				-0.7
1,214,600	-				-1.8
1,214,619	+				+0.5
1,214,651	+				+0.6
1,214,651	+				-0.0
1,214,652	-				-1.0
1,214,663	+				+0.3
1,214,664	-				+0.2
1,214,664	-				-2.2
1,214,693	+				+0.0
1,214,694	-				-0.1
1,214,694	-				+0.1
1,214,694	-				+0.1
1,214,694	-				+0.6
1,214,694	-				+0.6
1,214,736	-				-0.8
1,214,835	+		HER17_RS05505	0.20	+1.1
1,214,835	+		HER17_RS05505	0.20	+0.5
1,214,836	-		HER17_RS05505	0.20	-0.5
1,214,847	-		HER17_RS05505	0.21	+0.2
1,214,847	-		HER17_RS05505	0.21	-0.2
1,214,849	+		HER17_RS05505	0.22	+0.5
1,214,849	+		HER17_RS05505	0.22	+1.0
1,214,849	+		HER17_RS05505	0.22	+0.6
1,214,850	-		HER17_RS05505	0.22	+0.4
1,214,871	-		HER17_RS05505	0.24	-0.3
1,214,892	-		HER17_RS05505	0.27	-0.5
1,214,944	+		HER17_RS05505	0.33	+0.1
1,214,944	+		HER17_RS05505	0.33	+0.1
1,214,945	-		HER17_RS05505	0.33	+0.6
1,214,945	-		HER17_RS05505	0.33	+1.0
1,214,945	-		HER17_RS05505	0.33	-0.1
1,214,945	-		HER17_RS05505	0.33	+0.1
1,215,060	+		HER17_RS05505	0.46	+0.4
1,215,060	+		HER17_RS05505	0.46	+0.5
1,215,060	+		HER17_RS05505	0.46	-0.1
1,215,061	-		HER17_RS05505	0.46	+0.7
1,215,061	-		HER17_RS05505	0.46	+0.1
1,215,061	-		HER17_RS05505	0.46	-0.2
1,215,061	-		HER17_RS05505	0.46	-0.5
1,215,061	-		HER17_RS05505	0.46	+0.6
1,215,124	-		HER17_RS05505	0.53	-0.4
1,215,141	-		HER17_RS05505	0.55	-0.1
1,215,168	-		HER17_RS05505	0.59	+1.1
1,215,168	-		HER17_RS05505	0.59	-0.4
1,215,216	+		HER17_RS05505	0.64	+0.1
1,215,255	+		HER17_RS05505	0.69	-1.3
1,215,255	+		HER17_RS05505	0.69	-0.3
1,215,255	+		HER17_RS05505	0.69	+0.3
1,215,255	+		HER17_RS05505	0.69	+0.1
1,215,256	-		HER17_RS05505	0.69	-0.0
1,215,256	-		HER17_RS05505	0.69	-0.2
1,215,256	-		HER17_RS05505	0.69	-0.4
1,215,256	-		HER17_RS05505	0.69	+0.1
1,215,291	+		HER17_RS05505	0.73	+1.0
1,215,291	+		HER17_RS05505	0.73	+1.8
1,215,292	-		HER17_RS05505	0.73	+1.1
1,215,292	-		HER17_RS05505	0.73	-0.2
1,215,292	-		HER17_RS05505	0.73	+0.0
1,215,338	+		HER17_RS05505	0.78	+0.2
1,215,449	+				+1.2
1,215,449	+				-0.3
1,215,450	-				+0.2
1,215,450	-				+0.4
1,215,493	+				+0.4
1,215,494	-				+0.1
1,215,529	-				-0.5
1,215,575	-				-0.4