Strain Fitness in Pectobacterium carotovorum WPP14 around HER17_RS04410

Experiment: LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	LB
1,004,516	+		HER17_RS04405	0.86	+0.7
1,004,628	+				+0.7
1,004,637	+				-0.6
1,004,825	-				+0.3
1,004,844	-				+0.4
1,004,858	-				+0.0
1,004,875	+				+0.3
1,004,884	-				-0.5
1,004,924	+				-0.2
1,004,924	+				-0.5
1,004,925	-				-0.0
1,004,925	-				-0.7
1,004,925	-				+0.2
1,004,952	+				-0.3
1,004,952	+				-0.7
1,004,974	-				-0.9
1,004,974	-				+0.4
1,004,981	+				-0.1
1,004,982	-				-0.4
1,004,986	+				+0.1
1,005,030	+				+0.1
1,005,034	-				-0.7
1,005,051	-				+0.1
1,005,077	+				+0.2
1,005,078	-				+0.5
1,005,078	-				+0.1
1,005,092	-				+0.0
1,005,131	+				-0.3
1,005,133	+				+1.1
1,005,134	-				-1.1
1,005,177	+				+0.7
1,005,233	+		HER17_RS04420	0.12	+0.6
1,005,234	-		HER17_RS04420	0.12	+0.7
1,005,250	+		HER17_RS04420	0.13	+0.2
1,005,315	+		HER17_RS04420	0.18	+0.9
1,005,353	-		HER17_RS04420	0.21	-0.2
1,005,446	-		HER17_RS04420	0.28	+0.4
1,005,449	-		HER17_RS04420	0.29	+0.4
1,005,449	-		HER17_RS04420	0.29	+0.3
1,005,504	+		HER17_RS04420	0.33	-0.4
1,005,504	+		HER17_RS04420	0.33	+0.5
1,005,504	+		HER17_RS04420	0.33	+0.3
1,005,504	+		HER17_RS04420	0.33	-0.3
1,005,505	-		HER17_RS04420	0.33	+0.4
1,005,505	-		HER17_RS04420	0.33	+0.2
1,005,505	-		HER17_RS04420	0.33	+0.9
1,005,505	-		HER17_RS04420	0.33	+0.1
1,005,505	-		HER17_RS04420	0.33	-0.0
1,005,505	-		HER17_RS04420	0.33	+0.9
1,005,543	+		HER17_RS04420	0.36	-0.1
1,005,544	-		HER17_RS04420	0.36	-0.0
1,005,544	-		HER17_RS04420	0.36	-0.5
1,005,544	-		HER17_RS04420	0.36	-0.0
1,005,558	+		HER17_RS04420	0.37	+0.0
1,005,610	+		HER17_RS04420	0.41	+0.7
1,005,610	+		HER17_RS04420	0.41	+0.5
1,005,611	-		HER17_RS04420	0.41	-0.6
1,005,611	-		HER17_RS04420	0.41	+0.2